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Lag0015647 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015647
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTHO complex subunit 4D
Genome locationchr12:18578896..18580393
RNA-Seq ExpressionLag0015647
SyntenyLag0015647
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK01611.1 THO complex subunit 4D [Cucumis melo var. makuwa]1.7e-1781.54Show/hide
Query:  GSTKVVYTHRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMSVSTCINVTRVNGRS-RTVVLTYV
        GS +VVYT RSDAFA LK YNNVLLDGKPMKIEMLGDNAEM VS  INVT  NGR+ RTVVLTYV
Subjt:  GSTKVVYTHRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMSVSTCINVTRVNGRS-RTVVLTYV

XP_004145851.1 THO complex subunit 4D [Cucumis sativus]3.2e-1680.95Show/hide
Query:  GSTKVVYTHRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMSVSTCINVTRVNGRS-RTVVLT
        GS +VVYT RSDAFA LK YNNVLLDGKPMKIEMLGDNAEM VS  INVT  NGR+ RTVVLT
Subjt:  GSTKVVYTHRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMSVSTCINVTRVNGRS-RTVVLT

XP_008457020.1 PREDICTED: THO complex subunit 4D [Cucumis melo]3.2e-1680.95Show/hide
Query:  GSTKVVYTHRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMSVSTCINVTRVNGRS-RTVVLT
        GS +VVYT RSDAFA LK YNNVLLDGKPMKIEMLGDNAEM VS  INVT  NGR+ RTVVLT
Subjt:  GSTKVVYTHRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMSVSTCINVTRVNGRS-RTVVLT

XP_022143379.1 THO complex subunit 4D-like [Momordica charantia]3.2e-1680.95Show/hide
Query:  GSTKVVYTHRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMSVSTCINVTRVNGRS-RTVVLT
        GS +VVYT RSDAFA LK YNNVLLDGKPMKIE+LGDNAEM VS  INVT +NGRS RTVVLT
Subjt:  GSTKVVYTHRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMSVSTCINVTRVNGRS-RTVVLT

XP_038896761.1 THO complex subunit 4D-like [Benincasa hispida]1.1e-1682.54Show/hide
Query:  GSTKVVYTHRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMSVSTCINVTRVNGRS-RTVVLT
        GS +VVYT RSDAFA LK YNNVLLDG+PMKIEMLGDNAEM VS  INVT VNGRS RTVVLT
Subjt:  GSTKVVYTHRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMSVSTCINVTRVNGRS-RTVVLT

TrEMBL top hitse value%identityAlignment
A0A0A0L717 RRM domain-containing protein9.1e-1778.79Show/hide
Query:  GSTKVVYTHRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMSVSTCINVTRVNGRS-RTVVLTYVF
        GS +VVYT RSDAFA LK YNNVLLDGKPMKIEMLGDNAEM VS  INVT  NGR+ RTVVLT  F
Subjt:  GSTKVVYTHRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMSVSTCINVTRVNGRS-RTVVLTYVF

A0A1S3C452 THO complex subunit 4D1.5e-1680.95Show/hide
Query:  GSTKVVYTHRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMSVSTCINVTRVNGRS-RTVVLT
        GS +VVYT RSDAFA LK YNNVLLDGKPMKIEMLGDNAEM VS  INVT  NGR+ RTVVLT
Subjt:  GSTKVVYTHRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMSVSTCINVTRVNGRS-RTVVLT

A0A5D3BPA9 THO complex subunit 4D8.2e-1881.54Show/hide
Query:  GSTKVVYTHRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMSVSTCINVTRVNGRS-RTVVLTYV
        GS +VVYT RSDAFA LK YNNVLLDGKPMKIEMLGDNAEM VS  INVT  NGR+ RTVVLTYV
Subjt:  GSTKVVYTHRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMSVSTCINVTRVNGRS-RTVVLTYV

A0A6J1CP51 THO complex subunit 4D-like1.5e-1680.95Show/hide
Query:  GSTKVVYTHRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMSVSTCINVTRVNGRS-RTVVLT
        GS +VVYT RSDAFA LK YNNVLLDGKPMKIE+LGDNAEM VS  INVT +NGRS RTVVLT
Subjt:  GSTKVVYTHRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMSVSTCINVTRVNGRS-RTVVLT

A0A6J1J564 THO complex subunit 4D-like2.6e-1680.95Show/hide
Query:  GSTKVVYTHRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMSVSTCINVTRVNGRS-RTVVLT
        GS +VVYT RSDAFA LK YNNVLLDGKPMKIEMLGDNA+  VS  INVT VNGRS RTVVLT
Subjt:  GSTKVVYTHRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMSVSTCINVTRVNGRS-RTVVLT

SwissProt top hitse value%identityAlignment
Q6NQ72 THO complex subunit 4D9.3e-1156.06Show/hide
Query:  GSTKVVYTHRSDAFATLKCYNNVLLDGKPMKIEMLGDN----AEMSVSTCINVTRVNGR-SRTVVL
        G+ +VVY  RSDAF  LK YNNVLLDG+PM++E+LG N    A +S    +NVT +NGR  RTVV+
Subjt:  GSTKVVYTHRSDAFATLKCYNNVLLDGKPMKIEMLGDN----AEMSVSTCINVTRVNGR-SRTVVL

Q8L719 THO complex subunit 4B5.3e-0643.55Show/hide
Query:  MRNLGVRYDEDRGGVGVCLVYAHQGSTKVVYTHRSDAFATLKCYNNVLLDGKPMKIEMLGDN
        ++  G+ Y  DR G         +G+ +VV++ R DA A +K YNNV LDGK MKIE++G N
Subjt:  MRNLGVRYDEDRGGVGVCLVYAHQGSTKVVYTHRSDAFATLKCYNNVLLDGKPMKIEMLGDN

Q8L773 THO complex subunit 4A1.1e-0651.11Show/hide
Query:  QGSTKVVYTHRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMSVS
        +G+ +VVY+ R DA A +K YN+V LDGKPMKIE++G N + + +
Subjt:  QGSTKVVYTHRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMSVS

Q94EH8 THO complex subunit 4C2.1e-1054.1Show/hide
Query:  GSTKVVYTHRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMS-VSTCINVTRVNGRSRTVV
        GS +VVY  RSDA   ++ YNNVLLDG+PMK+E+LG N E + V+  +NVT +NGR +  V
Subjt:  GSTKVVYTHRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMS-VSTCINVTRVNGRSRTVV

Arabidopsis top hitse value%identityAlignment
AT1G66260.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.5e-1154.1Show/hide
Query:  GSTKVVYTHRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMS-VSTCINVTRVNGRSRTVV
        GS +VVY  RSDA   ++ YNNVLLDG+PMK+E+LG N E + V+  +NVT +NGR +  V
Subjt:  GSTKVVYTHRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMS-VSTCINVTRVNGRSRTVV

AT1G66260.2 RNA-binding (RRM/RBD/RNP motifs) family protein1.5e-1154.1Show/hide
Query:  GSTKVVYTHRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMS-VSTCINVTRVNGRSRTVV
        GS +VVY  RSDA   ++ YNNVLLDG+PMK+E+LG N E + V+  +NVT +NGR +  V
Subjt:  GSTKVVYTHRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMS-VSTCINVTRVNGRSRTVV

AT5G37720.1 ALWAYS EARLY 46.6e-1256.06Show/hide
Query:  GSTKVVYTHRSDAFATLKCYNNVLLDGKPMKIEMLGDN----AEMSVSTCINVTRVNGR-SRTVVL
        G+ +VVY  RSDAF  LK YNNVLLDG+PM++E+LG N    A +S    +NVT +NGR  RTVV+
Subjt:  GSTKVVYTHRSDAFATLKCYNNVLLDGKPMKIEMLGDN----AEMSVSTCINVTRVNGR-SRTVVL

AT5G37720.2 ALWAYS EARLY 46.6e-1256.06Show/hide
Query:  GSTKVVYTHRSDAFATLKCYNNVLLDGKPMKIEMLGDN----AEMSVSTCINVTRVNGR-SRTVVL
        G+ +VVY  RSDAF  LK YNNVLLDG+PM++E+LG N    A +S    +NVT +NGR  RTVV+
Subjt:  GSTKVVYTHRSDAFATLKCYNNVLLDGKPMKIEMLGDN----AEMSVSTCINVTRVNGR-SRTVVL

AT5G59950.1 RNA-binding (RRM/RBD/RNP motifs) family protein7.6e-0851.11Show/hide
Query:  QGSTKVVYTHRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMSVS
        +G+ +VVY+ R DA A +K YN+V LDGKPMKIE++G N + + +
Subjt:  QGSTKVVYTHRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMSVS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAATTTAGGAGTTCGATACGACGAGGATCGTGGTGGTGTTGGTGTGTGTTTGGTTTATGCTCATCAGGGCTCGACAAAGGTGGTATATACTCATAGAAGTGATGC
ATTTGCTACTCTGAAGTGCTATAACAATGTTTTACTAGATGGGAAGCCAATGAAGATTGAAATGCTTGGTGATAATGCTGAAATGTCAGTTTCTACATGTATAAATGTTA
CTAGAGTGAATGGAAGAAGTAGGACAGTTGTTCTAACGTACGTATTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAAATTTAGGAGTTCGATACGACGAGGATCGTGGTGGTGTTGGTGTGTGTTTGGTTTATGCTCATCAGGGCTCGACAAAGGTGGTATATACTCATAGAAGTGATGC
ATTTGCTACTCTGAAGTGCTATAACAATGTTTTACTAGATGGGAAGCCAATGAAGATTGAAATGCTTGGTGATAATGCTGAAATGTCAGTTTCTACATGTATAAATGTTA
CTAGAGTGAATGGAAGAAGTAGGACAGTTGTTCTAACGTACGTATTCTAG
Protein sequenceShow/hide protein sequence
MRNLGVRYDEDRGGVGVCLVYAHQGSTKVVYTHRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMSVSTCINVTRVNGRSRTVVLTYVF