; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0015693 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015693
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr12:20382902..20387613
RNA-Seq ExpressionLag0015693
SyntenyLag0015693
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5758504.1 putative RNA-directed DNA polymerase [Helianthus annuus]3.2e-3347.66Show/hide
Query:  SSMKIDMEKFDGMMNFDLWQVQVKDVLIQSRLHKALKERP--------------NDGAYE----------RLC------------TDGGPSKEHLESVVP
        S M+  +EK+DG +NF LWQVQVKDVLIQS LHKAL+ +P              +D  +E          RLC            +      E LE +  
Subjt:  SSMKIDMEKFDGMMNFDLWQVQVKDVLIQSRLHKALKERP--------------NDGAYE----------RLC------------TDGGPSKEHLESVVP

Query:  EGAILH----------ASNEGRYKISDHLSVLYSIISELEVIDVKIEDEDKALRLILSLTTSYEHMNPILMYGKKTLSFADVTSKLLSEERRLKSEGHSS
           I +             +G  KISDHLSVL +I+SELE I VK+EDEDKALRLILSLT+SYEHM PILMYGK+TL +ADVT KLLSEE+RL S GH+S
Subjt:  EGAILH----------ASNEGRYKISDHLSVLYSIISELEVIDVKIEDEDKALRLILSLTTSYEHMNPILMYGKKTLSFADVTSKLLSEERRLKSEGHSS

Query:  QGDSAPGASNWKKK
           +     N KKK
Subjt:  QGDSAPGASNWKKK

KAF5765959.1 putative RNA-directed DNA polymerase [Helianthus annuus]1.7e-3448.6Show/hide
Query:  SSMKIDMEKFDGMMNFDLWQVQVKDVLIQSRLHKALKERP--------------NDGAYE----------RLC------------TDGGPSKEHLESV--
        S M+ D+EK+DG +NF LWQVQVKDVLIQS LHKAL+ +P              +D  +E          RLC            +      E LE +  
Subjt:  SSMKIDMEKFDGMMNFDLWQVQVKDVLIQSRLHKALKERP--------------NDGAYE----------RLC------------TDGGPSKEHLESV--

Query:  ---VPEGAILHAS-----NEGRYKISDHLSVLYSIISELEVIDVKIEDEDKALRLILSLTTSYEHMNPILMYGKKTLSFADVTSKLLSEERRLKSEGHSS
           +P    L         +G  KISDHLSVL +I+SELE I VK+EDEDKALRLILSLT+SYEHM PILMYGK+TL +ADVT KLLSEE+RL S GH+S
Subjt:  ---VPEGAILHAS-----NEGRYKISDHLSVLYSIISELEVIDVKIEDEDKALRLILSLTTSYEHMNPILMYGKKTLSFADVTSKLLSEERRLKSEGHSS

Query:  QGDSAPGASNWKKK
           +     N KKK
Subjt:  QGDSAPGASNWKKK

QHN81458.1 Retrovirus-related Pol polyprotein [Arachis hypogaea]1.6e-3247.98Show/hide
Query:  MSSFTSSMKIDMEKFDGMMNFDLWQVQVKDVLIQSRLHKALKER---PNDGAYE----------RLCTDGGPSKEHLESV--VPEGAILHASNEGRY---
        MS ++S++K+++EKFDG +NF LWQ+QVKDVLIQS LHKALKER     D  +E          RLC     +K  L +V  +     L    EG Y   
Subjt:  MSSFTSSMKIDMEKFDGMMNFDLWQVQVKDVLIQSRLHKALKER---PNDGAYE----------RLCTDGGPSKEHLESV--VPEGAILHASNEGRY---

Query:  ---------------------KISDHLSVLYSIISELEVIDVKIEDEDKALRLILSLTTSYEHMNPILMYGKKTLSFADVTSKLLSEERRLKSEGHSS
                             KISDHLS +  I+SELE I VKI+DEDKALRLILSL +SYE++ P+LMYGK+TL+F +V SKL++EERR+K+EG +S
Subjt:  ---------------------KISDHLSVLYSIISELEVIDVKIEDEDKALRLILSLTTSYEHMNPILMYGKKTLSFADVTSKLLSEERRLKSEGHSS

QHO24915.1 Retrovirus-related Pol polyprotein [Arachis hypogaea]1.3e-3144.71Show/hide
Query:  MSSFTSSMKIDMEKFDGMMNFDLWQVQVKDVLIQSRLHKALKER---PNDGAYE----------RLCTDGG---------PSKE---HLESVVPEGAIL-
        MS ++S +K+++EKFDG +NF LWQ+QVKDVLI+S LHKALKE+     D  +E          RLC              +KE    LE +    +I  
Subjt:  MSSFTSSMKIDMEKFDGMMNFDLWQVQVKDVLIQSRLHKALKER---PNDGAYE----------RLCTDGG---------PSKE---HLESVVPEGAIL-

Query:  ---------HASNEGRYKISDHLSVLYSIISELEVIDVKIEDEDKALRLILSLTTSYEHMNPILMYGKKTLSFADVTSKLLSEERRLKSEGHSSQGDSAP
                 + S +   KISDHLS +  I+SELE I VKI+DEDKALRLILSL +SYE++ P+LMYGK+TL+F +V SKL++EERR+K++G++S   +  
Subjt:  ---------HASNEGRYKISDHLSVLYSIISELEVIDVKIEDEDKALRLILSLTTSYEHMNPILMYGKKTLSFADVTSKLLSEERRLKSEGHSSQGDSAP

Query:  GASNWKKK
         + N++K+
Subjt:  GASNWKKK

XP_022139673.1 uncharacterized protein LOC111010521 [Momordica charantia]1.7e-4752.48Show/hide
Query:  EVDMSSFTSSMKIDMEKFDGMMNFDLWQVQVKDVLIQSRLHKALKERPNDGAYERLCTDGGPSK------------------------------------
        E DMS F S +KID+EKFDGM+NF LWQVQVKDVLIQS LHKALK RP++GA E+L  DGGP +                                    
Subjt:  EVDMSSFTSSMKIDMEKFDGMMNFDLWQVQVKDVLIQSRLHKALKERPNDGAYERLCTDGGPSK------------------------------------

Query:  ----------------EHLESVVPEGAILH----------ASNEGRYKISDHLSVLYSIISELEVIDVKIEDEDKALRLILSLTTSYEHMNPILMYGKKT
                        E LE++     I +             E   KISDHLS L SII ELE I+VKI+DEDKALRLILSL  SYEHM PILMYGK T
Subjt:  ----------------EHLESVVPEGAILH----------ASNEGRYKISDHLSVLYSIISELEVIDVKIEDEDKALRLILSLTTSYEHMNPILMYGKKT

Query:  LSFADVTSKLLSEERRLKSEGHSSQGDSAPGASNWKKKKDSV
        L+FA+VTSKLLSEERRLKSEG +S  DSA   SNWKKKKDSV
Subjt:  LSFADVTSKLLSEERRLKSEGHSSQGDSAPGASNWKKKKDSV

TrEMBL top hitse value%identityAlignment
A0A2H5QXN2 Uncharacterized protein5.1e-2950Show/hide
Query:  FTSSMKIDMEKFDGMMNFDLWQVQVKDVLIQSRLHKALKERPNDGAYERLCTDGGPSKEHLESVVPEGAILH-----------ASNEGRYKISDHLSVLY
        F+S +K ++EKFDG +NF LWQVQVKDVLIQS LHKALK +P+  +            E LE +    +I +              EG  KI DHLSVL 
Subjt:  FTSSMKIDMEKFDGMMNFDLWQVQVKDVLIQSRLHKALKERPNDGAYERLCTDGGPSKEHLESVVPEGAILH-----------ASNEGRYKISDHLSVLY

Query:  SIISELEVIDVKIEDEDKALRLILSLTTSYEHMNPILMYGKKTLSFADVTSKLLSEERRLKSEGHSSQGDSA
         I+ ELE I VKIED DKALRL+ SL TSY+H+ P LMYGK+T++  +VT+ LLSEERRL  E   +   SA
Subjt:  SIISELEVIDVKIEDEDKALRLILSLTTSYEHMNPILMYGKKTLSFADVTSKLLSEERRLKSEGHSSQGDSA

A0A6A3B141 CCHC-type domain-containing protein1.8e-2946.7Show/hide
Query:  SMKIDMEKFDGMMNFDLWQVQVKDVLIQSRLHKALKERP---NDGAYERLCTD--GGPSKEHLESVVPEGAILHASNEGRY-------------------
        S + D+EKFDG +NF LWQVQVKD+LIQS L+KALK +P   ++G      +D  G   K  +     E   + A+++ R                    
Subjt:  SMKIDMEKFDGMMNFDLWQVQVKDVLIQSRLHKALKERP---NDGAYERLCTD--GGPSKEHLESVVPEGAILHASNEGRY-------------------

Query:  --KISDHLSVLYSIISELEVIDVKIEDEDKALRLILSLTTSYEHMNPILMYGKKTLSFADVTSKLLSEERRLKS-EGHSSQGDSAPGASNWKKKKDS
          KISDHLS L  I+SELE I VKI+DEDKALRLI SL +SYEHM  +LMY K+ ++F++VTSKL+SEERRLK+ E  SS+  +     N KK K S
Subjt:  --KISDHLSVLYSIISELEVIDVKIEDEDKALRLILSLTTSYEHMNPILMYGKKTLSFADVTSKLLSEERRLKS-EGHSSQGDSAPGASNWKKKKDS

A0A6A3BK59 CCHC-type domain-containing protein6.3e-2741.85Show/hide
Query:  SMKIDMEKFDGMMNFDLWQVQVKDVLIQSRLHKALK------------ERPNDGAYE----------------------RLC---------TDGGPSKEH
        S + D+EKFDG +NF LWQVQVKD+LIQS L+KALK            ++P+D + +                      RLC              +KE 
Subjt:  SMKIDMEKFDGMMNFDLWQVQVKDVLIQSRLHKALK------------ERPNDGAYE----------------------RLC---------TDGGPSKEH

Query:  LESVVPEGAILHASN-------------EGRYKISDHLSVLYSIISELEVIDVKIEDEDKALRLILSLTTSYEHMNPILMYGKKTLSFADVTSKLLSEER
         E +         SN             E   KISDHLS L  I+SELE I V+I+DEDKALRLI SL +SYEHM  +LMYGK+ ++F++VTSKL+SEER
Subjt:  LESVVPEGAILHASN-------------EGRYKISDHLSVLYSIISELEVIDVKIEDEDKALRLILSLTTSYEHMNPILMYGKKTLSFADVTSKLLSEER

Query:  RLKS-EGHSSQGDSAPGASNWKKKKDS
        RLK+ E  SS+  +     N KK K S
Subjt:  RLKS-EGHSSQGDSAPGASNWKKKKDS

A0A6J1CG82 uncharacterized protein LOC1110105218.4e-4852.48Show/hide
Query:  EVDMSSFTSSMKIDMEKFDGMMNFDLWQVQVKDVLIQSRLHKALKERPNDGAYERLCTDGGPSK------------------------------------
        E DMS F S +KID+EKFDGM+NF LWQVQVKDVLIQS LHKALK RP++GA E+L  DGGP +                                    
Subjt:  EVDMSSFTSSMKIDMEKFDGMMNFDLWQVQVKDVLIQSRLHKALKERPNDGAYERLCTDGGPSK------------------------------------

Query:  ----------------EHLESVVPEGAILH----------ASNEGRYKISDHLSVLYSIISELEVIDVKIEDEDKALRLILSLTTSYEHMNPILMYGKKT
                        E LE++     I +             E   KISDHLS L SII ELE I+VKI+DEDKALRLILSL  SYEHM PILMYGK T
Subjt:  ----------------EHLESVVPEGAILH----------ASNEGRYKISDHLSVLYSIISELEVIDVKIEDEDKALRLILSLTTSYEHMNPILMYGKKT

Query:  LSFADVTSKLLSEERRLKSEGHSSQGDSAPGASNWKKKKDSV
        L+FA+VTSKLLSEERRLKSEG +S  DSA   SNWKKKKDSV
Subjt:  LSFADVTSKLLSEERRLKSEGHSSQGDSAPGASNWKKKKDSV

V4T6T3 Uncharacterized protein5.1e-2950Show/hide
Query:  FTSSMKIDMEKFDGMMNFDLWQVQVKDVLIQSRLHKALKERPNDGAYERLCTDGGPSKEHLESVVPEGAILH-----------ASNEGRYKISDHLSVLY
        F+S +K ++EKFDG +NF LWQVQVKDVLIQS LHKALK +P+  +            E LE +    +I +              EG  KI DHLSVL 
Subjt:  FTSSMKIDMEKFDGMMNFDLWQVQVKDVLIQSRLHKALKERPNDGAYERLCTDGGPSKEHLESVVPEGAILH-----------ASNEGRYKISDHLSVLY

Query:  SIISELEVIDVKIEDEDKALRLILSLTTSYEHMNPILMYGKKTLSFADVTSKLLSEERRLKSEGHSSQGDSA
         I+ ELE I VKIED DKALRL+ SL TSY+H+ P LMYGK+T++  +VT+ LLSEERRL  E   +   SA
Subjt:  SIISELEVIDVKIEDEDKALRLILSLTTSYEHMNPILMYGKKTLSFADVTSKLLSEERRLKSEGHSSQGDSA

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.1e-0741.38Show/hide
Query:  LHASNEGRYKISDHLSVLYSIISELEVIDVKIEDEDKALRLILSLTTSYEHMNPILMYGKKTLSFADVTSKLLSEERRLKSEGHSSQ
        LH S EG   +S HL+V   +I++L  + VKIE+EDKA+ L+ SL +SY+++   +++GK T+   DVTS LL  E+  K   +  Q
Subjt:  LHASNEGRYKISDHLSVLYSIISELEVIDVKIEDEDKALRLILSLTTSYEHMNPILMYGKKTLSFADVTSKLLSEERRLKSEGHSSQ

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTATGCTGCCAAATTTCCATCTCAAACTCATTAACTCAAAACTCTCTTAAGCTTGTGTTTCAAGCTCTTTCCCTCTCAAATTTCATCACTAGAGGATCCCACAACCC
GTTCCAAAGGCCTGAGAATAGCAAGGAAGATCAAGTAGTGGTTCGTGACAAGTTGCTTCAGCAGCCTCGACAGTGGCCAAACCCCCCTACAGTACTCTGCCTCGCGGCAG
CGTCAACCACAGTGGCCAAACCTAAAGCTCTCATTGCGCGCTATCTTTTCGGCTCCCCGACAAGTCCAAACTCTGAATCTTCATCAGGATTAGCTAGGAGTGAAGTAGAT
ATGTCAAGCTTCACGAGTTCAATGAAGATTGACATGGAGAAATTTGATGGAATGATGAACTTCGACTTGTGGCAAGTGCAAGTCAAGGATGTGTTGATACAATCTAGGTT
ACACAAGGCTTTGAAGGAAAGACCAAACGATGGTGCTTATGAAAGATTATGCACTGATGGTGGTCCAAGCAAGGAGCATCTCGAATCGGTTGTACCTGAAGGAGCAATTT
TACACGCTTCGAATGAAGGAAGGTACAAAATCTCAGATCATTTGAGTGTTCTCTATAGCATCATTTCAGAGTTGGAGGTGATCGATGTTAAGATAGAGGATGAGGATAAG
GCACTCAGGCTTATCTTGTCACTTACAACTTCCTATGAACACATGAACCCAATCTTGATGTACGGAAAGAAAACTTTAAGTTTTGCTGATGTTACTAGTAAATTGTTATC
AGAGGAAAGAAGGTTGAAGAGTGAAGGACATTCTTCACAAGGGGATTCAGCACCAGGAGCTAGCAATTGGAAGAAGAAGAAAGATTCTGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTATGCTGCCAAATTTCCATCTCAAACTCATTAACTCAAAACTCTCTTAAGCTTGTGTTTCAAGCTCTTTCCCTCTCAAATTTCATCACTAGAGGATCCCACAACCC
GTTCCAAAGGCCTGAGAATAGCAAGGAAGATCAAGTAGTGGTTCGTGACAAGTTGCTTCAGCAGCCTCGACAGTGGCCAAACCCCCCTACAGTACTCTGCCTCGCGGCAG
CGTCAACCACAGTGGCCAAACCTAAAGCTCTCATTGCGCGCTATCTTTTCGGCTCCCCGACAAGTCCAAACTCTGAATCTTCATCAGGATTAGCTAGGAGTGAAGTAGAT
ATGTCAAGCTTCACGAGTTCAATGAAGATTGACATGGAGAAATTTGATGGAATGATGAACTTCGACTTGTGGCAAGTGCAAGTCAAGGATGTGTTGATACAATCTAGGTT
ACACAAGGCTTTGAAGGAAAGACCAAACGATGGTGCTTATGAAAGATTATGCACTGATGGTGGTCCAAGCAAGGAGCATCTCGAATCGGTTGTACCTGAAGGAGCAATTT
TACACGCTTCGAATGAAGGAAGGTACAAAATCTCAGATCATTTGAGTGTTCTCTATAGCATCATTTCAGAGTTGGAGGTGATCGATGTTAAGATAGAGGATGAGGATAAG
GCACTCAGGCTTATCTTGTCACTTACAACTTCCTATGAACACATGAACCCAATCTTGATGTACGGAAAGAAAACTTTAAGTTTTGCTGATGTTACTAGTAAATTGTTATC
AGAGGAAAGAAGGTTGAAGAGTGAAGGACATTCTTCACAAGGGGATTCAGCACCAGGAGCTAGCAATTGGAAGAAGAAGAAAGATTCTGTGTAG
Protein sequenceShow/hide protein sequence
MLCCQISISNSLTQNSLKLVFQALSLSNFITRGSHNPFQRPENSKEDQVVVRDKLLQQPRQWPNPPTVLCLAAASTTVAKPKALIARYLFGSPTSPNSESSSGLARSEVD
MSSFTSSMKIDMEKFDGMMNFDLWQVQVKDVLIQSRLHKALKERPNDGAYERLCTDGGPSKEHLESVVPEGAILHASNEGRYKISDHLSVLYSIISELEVIDVKIEDEDK
ALRLILSLTTSYEHMNPILMYGKKTLSFADVTSKLLSEERRLKSEGHSSQGDSAPGASNWKKKKDSV