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Lag0015729 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015729
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchr12:21806786..21807088
RNA-Seq ExpressionLag0015729
SyntenyLag0015729
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW15416.1 hypothetical protein CK203_082664 [Vitis vinifera]2.1e-1645.83Show/hide
Query:  MSEIVSLTSTADIWSSLNLSYDSNTTARIMGLKTQIQKIKKDGLPVSKYLAKIKEIADKFAAIEESISYRDHLAHILDGLGIEYNAFITTIQNRSD
        +  I+   +T +IW +LN  Y S + A ++GL +Q+Q+IKK+G+ +S+YLA+IKE+ DK++A+ E +SYRD L + L+GL  EY+ F+T+I NRS+
Subjt:  MSEIVSLTSTADIWSSLNLSYDSNTTARIMGLKTQIQKIKKDGLPVSKYLAKIKEIADKFAAIEESISYRDHLAHILDGLGIEYNAFITTIQNRSD

RVW69807.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]2.1e-1647.92Show/hide
Query:  MSEIVSLTSTADIWSSLNLSYDSNTTARIMGLKTQIQKIKKDGLPVSKYLAKIKEIADKFAAIEESISYRDHLAHILDGLGIEYNAFITTIQNRSD
        + +IV  ++  DIW+SLN  Y+S + A +M L +Q+Q+IKK  +P+S+YL+++K + D+FA I E +SYRD L  IL+GL  EY+ F+T+I NRSD
Subjt:  MSEIVSLTSTADIWSSLNLSYDSNTTARIMGLKTQIQKIKKDGLPVSKYLAKIKEIADKFAAIEESISYRDHLAHILDGLGIEYNAFITTIQNRSD

XP_022155181.1 uncharacterized protein LOC111022315 [Momordica charantia]2.6e-3071.88Show/hide
Query:  MSEIVSLTSTADIWSSLNLSYDSNTTARIMGLKTQIQKIKKDGLPVSKYLAKIKEIADKFAAIEESISYRDHLAHILDGLGIEYNAFITTIQNRSD
        M E+VSL +T DIWSSL   YDS TTARIMGLKT++Q ++KDG  VS+YLAKIKEIADKFAA+ E +SYRDHLAH+LDGLG EYNAF+T+I NR+D
Subjt:  MSEIVSLTSTADIWSSLNLSYDSNTTARIMGLKTQIQKIKKDGLPVSKYLAKIKEIADKFAAIEESISYRDHLAHILDGLGIEYNAFITTIQNRSD

XP_038887133.1 uncharacterized protein LOC120077323 [Benincasa hispida]1.7e-2157.29Show/hide
Query:  MSEIVSLTSTADIWSSLNLSYDSNTTARIMGLKTQIQKIKKDGLPVSKYLAKIKEIADKFAAIEESISYRDHLAHILDGLGIEYNAFITTIQNRSD
        M EIV   S  DIW +L   Y+S++ A IMG  +Q+QKIKKDGL VS+YLA+IK++ D FAAI E +SYRDHL++IL+GLG EYN F+++I NR++
Subjt:  MSEIVSLTSTADIWSSLNLSYDSNTTARIMGLKTQIQKIKKDGLPVSKYLAKIKEIADKFAAIEESISYRDHLAHILDGLGIEYNAFITTIQNRSD

XP_038891713.1 uncharacterized protein LOC120081111 [Benincasa hispida]4.2e-1764.71Show/hide
Query:  MGLKTQIQKIKKDGLPVSKYLAKIKEIADKFAAIEESISYRDHLAHILDGLGIEYNAFITTIQNRSDD
        M LK ++QKI+KD L +S+YL++IK++ADKF+ + ESISYRDHL HILDGLG EYNAF+T+IQN  D+
Subjt:  MGLKTQIQKIKKDGLPVSKYLAKIKEIADKFAAIEESISYRDHLAHILDGLGIEYNAFITTIQNRSDD

TrEMBL top hitse value%identityAlignment
A0A438BWQ3 Uncharacterized protein1.0e-1645.83Show/hide
Query:  MSEIVSLTSTADIWSSLNLSYDSNTTARIMGLKTQIQKIKKDGLPVSKYLAKIKEIADKFAAIEESISYRDHLAHILDGLGIEYNAFITTIQNRSD
        +  I+   +T +IW +LN  Y S + A ++GL +Q+Q+IKK+G+ +S+YLA+IKE+ DK++A+ E +SYRD L + L+GL  EY+ F+T+I NRS+
Subjt:  MSEIVSLTSTADIWSSLNLSYDSNTTARIMGLKTQIQKIKKDGLPVSKYLAKIKEIADKFAAIEESISYRDHLAHILDGLGIEYNAFITTIQNRSD

A0A438FD18 Retrovirus-related Pol polyprotein from transposon RE13.9e-1644.79Show/hide
Query:  MSEIVSLTSTADIWSSLNLSYDSNTTARIMGLKTQIQKIKKDGLPVSKYLAKIKEIADKFAAIEESISYRDHLAHILDGLGIEYNAFITTIQNRSD
        +  IV   +  +IW +LN+ Y S + A ++GL +Q+QKIKK+G+ +S+YLA+IK++ DK++A+ E +SY+D L H L+GL  +Y+ F+ +I NRSD
Subjt:  MSEIVSLTSTADIWSSLNLSYDSNTTARIMGLKTQIQKIKKDGLPVSKYLAKIKEIADKFAAIEESISYRDHLAHILDGLGIEYNAFITTIQNRSD

A0A438GC62 Retrovirus-related Pol polyprotein from transposon RE11.0e-1647.92Show/hide
Query:  MSEIVSLTSTADIWSSLNLSYDSNTTARIMGLKTQIQKIKKDGLPVSKYLAKIKEIADKFAAIEESISYRDHLAHILDGLGIEYNAFITTIQNRSD
        + +IV  ++  DIW+SLN  Y+S + A +M L +Q+Q+IKK  +P+S+YL+++K + D+FA I E +SYRD L  IL+GL  EY+ F+T+I NRSD
Subjt:  MSEIVSLTSTADIWSSLNLSYDSNTTARIMGLKTQIQKIKKDGLPVSKYLAKIKEIADKFAAIEESISYRDHLAHILDGLGIEYNAFITTIQNRSD

A0A438IT10 Uncharacterized protein3.0e-1646.74Show/hide
Query:  VSLTSTADIWSSLNLSYDSNTTARIMGLKTQIQKIKKDGLPVSKYLAKIKEIADKFAAIEESISYRDHLAHILDGLGIEYNAFITTIQNRSD
        +   +T +IW +LN  Y S + A ++GL +Q+Q+IKK+G+ +S+YLA+IKE+ DK++A+ E +SYRD L + L+GL  EY+ F+T+I NRS+
Subjt:  VSLTSTADIWSSLNLSYDSNTTARIMGLKTQIQKIKKDGLPVSKYLAKIKEIADKFAAIEESISYRDHLAHILDGLGIEYNAFITTIQNRSD

A0A6J1DQX7 uncharacterized protein LOC1110223151.2e-3071.88Show/hide
Query:  MSEIVSLTSTADIWSSLNLSYDSNTTARIMGLKTQIQKIKKDGLPVSKYLAKIKEIADKFAAIEESISYRDHLAHILDGLGIEYNAFITTIQNRSD
        M E+VSL +T DIWSSL   YDS TTARIMGLKT++Q ++KDG  VS+YLAKIKEIADKFAA+ E +SYRDHLAH+LDGLG EYNAF+T+I NR+D
Subjt:  MSEIVSLTSTADIWSSLNLSYDSNTTARIMGLKTQIQKIKKDGLPVSKYLAKIKEIADKFAAIEESISYRDHLAHILDGLGIEYNAFITTIQNRSD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G34070.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)1.5e-0423.33Show/hide
Query:  VSLTSTADIWSSLNLSYDSNTTARIMGLKTQIQKIKKDGLPVSKYLAKIKEIADKFAAIEESISYRDHLAHILDGLGIEYNAFITTIQNR
        V+ +++ DIW  +   + +N  AR + L ++++      + V+ Y  K+K++AD    ++  ++ R+ + ++L+GL  +++  I  I++R
Subjt:  VSLTSTADIWSSLNLSYDSNTTARIMGLKTQIQKIKKDGLPVSKYLAKIKEIADKFAAIEESISYRDHLAHILDGLGIEYNAFITTIQNR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGAAATAGTTAGTTTAACATCTACTGCTGATATATGGTCTTCTCTTAATCTTTCTTATGACTCTAATACTACTGCTCGTATAATGGGGCTGAAAACTCAAATTCA
AAAGATAAAGAAAGATGGTTTGCCCGTTAGTAAGTATCTAGCGAAAATTAAGGAAATAGCTGATAAATTTGCAGCCATTGAGGAATCTATCTCTTATAGGGATCATTTGG
CTCACATCCTTGATGGTTTAGGGATAGAGTACAATGCTTTCATTACAACAATCCAAAACAGGTCAGATGATGGGTTAATATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGAAATAGTTAGTTTAACATCTACTGCTGATATATGGTCTTCTCTTAATCTTTCTTATGACTCTAATACTACTGCTCGTATAATGGGGCTGAAAACTCAAATTCA
AAAGATAAAGAAAGATGGTTTGCCCGTTAGTAAGTATCTAGCGAAAATTAAGGAAATAGCTGATAAATTTGCAGCCATTGAGGAATCTATCTCTTATAGGGATCATTTGG
CTCACATCCTTGATGGTTTAGGGATAGAGTACAATGCTTTCATTACAACAATCCAAAACAGGTCAGATGATGGGTTAATATGA
Protein sequenceShow/hide protein sequence
MSEIVSLTSTADIWSSLNLSYDSNTTARIMGLKTQIQKIKKDGLPVSKYLAKIKEIADKFAAIEESISYRDHLAHILDGLGIEYNAFITTIQNRSDDGLI