; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0015770 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015770
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon protein
Genome locationchr12:23572025..23573167
RNA-Seq ExpressionLag0015770
SyntenyLag0015770
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.4e-1351.04Show/hide
Query:  MKHSCARNVIERA---LKGRLVILQGKLYYPVQIQGRTIMTCSIHHNLFDREIGDRELPDDLDEVD-TSATIGGENISFMRLLINGAGGGMSWQNK
        MKHS ARNVI+RA   LKG   IL+GK YYPV +Q RTIM C + HNL +RE+ + E+ DDLDE D T AT GG+ I++    I  + G   W+++
Subjt:  MKHSCARNVIERA---LKGRLVILQGKLYYPVQIQGRTIMTCSIHHNLFDREIGDRELPDDLDEVD-TSATIGGENISFMRLLINGAGGGMSWQNK

KAA0035180.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]4.9e-1456.79Show/hide
Query:  MKHSCARNVIERA---LKGRLVILQGKLYYPVQIQGRTIMTCSIHHNLFDREIGDRELPDDLDEVD-TSATIGGENISFMR
        MKHS ARNV ERA   LKGR  IL+GK YYPV +Q RTIM C + HNL +RE+ + E+ DDLDE D T AT GG+ +++++
Subjt:  MKHSCARNVIERA---LKGRLVILQGKLYYPVQIQGRTIMTCSIHHNLFDREIGDRELPDDLDEVD-TSATIGGENISFMR

KAA0062747.1 retrotransposon protein [Cucumis melo var. makuwa]3.2e-1357.5Show/hide
Query:  MKHSCARNVIERA---LKGRLVILQGKLYYPVQIQGRTIMTCSIHHNLFDREIGDRELPDDLDEVD-TSATIGGENISFM
        MKHS +RNVIERA   LKG   IL+GK YYPV +Q RTIM C + HNL +RE+ + E+ DDLDE D T AT GG+ I+++
Subjt:  MKHSCARNVIERA---LKGRLVILQGKLYYPVQIQGRTIMTCSIHHNLFDREIGDRELPDDLDEVD-TSATIGGENISFM

KAA0063753.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]2.4e-1356.25Show/hide
Query:  MKHSCARNVIER---ALKGRLVILQGKLYYPVQIQGRTIMTCSIHHNLFDREIGDRELPDDLDEVD-TSATIGGENISFM
        +KHS A+NVIER    LKGR  IL+GK YYPV +Q RTIM C + HNL +RE+ + E+ DDLDE D T AT GG+ I+++
Subjt:  MKHSCARNVIER---ALKGRLVILQGKLYYPVQIQGRTIMTCSIHHNLFDREIGDRELPDDLDEVD-TSATIGGENISFM

XP_008441953.1 PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo]1.1e-1358.75Show/hide
Query:  MKHSCARNVIERA---LKGRLVILQGKLYYPVQIQGRTIMTCSIHHNLFDREIGDRELPDDLDEVD-TSATIGGENISFM
        MKH  ARNVIERA   LKGR  IL+GK YYPV +Q RTIM C + HNL  RE+ + E+ DDLDE D T AT GG+ I+++
Subjt:  MKHSCARNVIERA---LKGRLVILQGKLYYPVQIQGRTIMTCSIHHNLFDREIGDRELPDDLDEVD-TSATIGGENISFM

TrEMBL top hitse value%identityAlignment
A0A1S3B4J8 uncharacterized protein LOC1034859525.3e-1458.75Show/hide
Query:  MKHSCARNVIERA---LKGRLVILQGKLYYPVQIQGRTIMTCSIHHNLFDREIGDRELPDDLDEVD-TSATIGGENISFM
        MKH  ARNVIERA   LKGR  IL+GK YYPV +Q RTIM C + HNL  RE+ + E+ DDLDE D T AT GG+ I+++
Subjt:  MKHSCARNVIERA---LKGRLVILQGKLYYPVQIQGRTIMTCSIHHNLFDREIGDRELPDDLDEVD-TSATIGGENISFM

A0A5A7SQU2 Putative nuclease HARBI16.9e-1451.04Show/hide
Query:  MKHSCARNVIERA---LKGRLVILQGKLYYPVQIQGRTIMTCSIHHNLFDREIGDRELPDDLDEVD-TSATIGGENISFMRLLINGAGGGMSWQNK
        MKHS ARNVI+RA   LKG   IL+GK YYPV +Q RTIM C + HNL +RE+ + E+ DDLDE D T AT GG+ I++    I  + G   W+++
Subjt:  MKHSCARNVIERA---LKGRLVILQGKLYYPVQIQGRTIMTCSIHHNLFDREIGDRELPDDLDEVD-TSATIGGENISFMRLLINGAGGGMSWQNK

A0A5A7SVX9 Putative nuclease HARBI12.4e-1456.79Show/hide
Query:  MKHSCARNVIERA---LKGRLVILQGKLYYPVQIQGRTIMTCSIHHNLFDREIGDRELPDDLDEVD-TSATIGGENISFMR
        MKHS ARNV ERA   LKGR  IL+GK YYPV +Q RTIM C + HNL +RE+ + E+ DDLDE D T AT GG+ +++++
Subjt:  MKHSCARNVIERA---LKGRLVILQGKLYYPVQIQGRTIMTCSIHHNLFDREIGDRELPDDLDEVD-TSATIGGENISFMR

A0A5A7U0J9 Putative nuclease HARBI15.3e-1458.75Show/hide
Query:  MKHSCARNVIERA---LKGRLVILQGKLYYPVQIQGRTIMTCSIHHNLFDREIGDRELPDDLDEVD-TSATIGGENISFM
        MKH  ARNVIERA   LKGR  IL+GK YYPV +Q RTIM C + HNL  RE+ + E+ DDLDE D T AT GG+ I+++
Subjt:  MKHSCARNVIERA---LKGRLVILQGKLYYPVQIQGRTIMTCSIHHNLFDREIGDRELPDDLDEVD-TSATIGGENISFM

A0A5A7V6M3 Putative nuclease HARBI11.2e-1356.25Show/hide
Query:  MKHSCARNVIER---ALKGRLVILQGKLYYPVQIQGRTIMTCSIHHNLFDREIGDRELPDDLDEVD-TSATIGGENISFM
        +KHS A+NVIER    LKGR  IL+GK YYPV +Q RTIM C + HNL +RE+ + E+ DDLDE D T AT GG+ I+++
Subjt:  MKHSCARNVIER---ALKGRLVILQGKLYYPVQIQGRTIMTCSIHHNLFDREIGDRELPDDLDEVD-TSATIGGENISFM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCATTCATGTGCAAGGAACGTGATTGAGAGGGCGTTGAAAGGAAGGTTGGTCATTCTCCAAGGGAAATTGTATTATCCCGTCCAAATTCAAGGTCGGACCATCAT
GACGTGTAGCATCCATCACAATCTTTTCGATAGGGAGATAGGTGACCGTGAACTTCCCGATGATCTAGATGAGGTGGACACTTCGGCTACAATTGGTGGGGAGAATATTA
GTTTCATGAGACTTCTGATAAATGGAGCTGGAGGAGGGATGAGTTGGCAAAACAAATATTTTCGAATTGGGAGTTACGGTTCGTACCCAAAAGAAATAGTACCAGAAGAT
TGTAGAAATAATGGGGCTCGGATGCAGCGAATTTCGGTGGAACAACGTATCGAGGAGAACGACATCCCAATCCCGCTGTTCACCATGCCTACTGCACGACATGCCACATG
A
mRNA sequenceShow/hide mRNA sequence
ATGAAGCATTCATGTGCAAGGAACGTGATTGAGAGGGCGTTGAAAGGAAGGTTGGTCATTCTCCAAGGGAAATTGTATTATCCCGTCCAAATTCAAGGTCGGACCATCAT
GACGTGTAGCATCCATCACAATCTTTTCGATAGGGAGATAGGTGACCGTGAACTTCCCGATGATCTAGATGAGGTGGACACTTCGGCTACAATTGGTGGGGAGAATATTA
GTTTCATGAGACTTCTGATAAATGGAGCTGGAGGAGGGATGAGTTGGCAAAACAAATATTTTCGAATTGGGAGTTACGGTTCGTACCCAAAAGAAATAGTACCAGAAGAT
TGTAGAAATAATGGGGCTCGGATGCAGCGAATTTCGGTGGAACAACGTATCGAGGAGAACGACATCCCAATCCCGCTGTTCACCATGCCTACTGCACGACATGCCACATG
A
Protein sequenceShow/hide protein sequence
MKHSCARNVIERALKGRLVILQGKLYYPVQIQGRTIMTCSIHHNLFDREIGDRELPDDLDEVDTSATIGGENISFMRLLINGAGGGMSWQNKYFRIGSYGSYPKEIVPED
CRNNGARMQRISVEQRIEENDIPIPLFTMPTARHAT