; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0015813 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015813
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionChromo domain-containing protein
Genome locationchr12:25578289..25580154
RNA-Seq ExpressionLag0015813
SyntenyLag0015813
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0006396 - RNA processing (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AEV42261.1 hypothetical protein [Beta vulgaris]1.9e-0546.43Show/hide
Query:  LLGLRKSLLGDDT-LEVLIRWENTLKDDATWESAADISTQFPSFHLEDKVASWGGG
        +LG+R + L      E+L++W +   D+ATWE+  DI  +FP+FHLEDKV +W GG
Subjt:  LLGLRKSLLGDDT-LEVLIRWENTLKDDATWESAADISTQFPSFHLEDKVASWGGG

EXC28036.1 G patch domain-containing protein 1 [Morus notabilis]6.9e-0858.93Show/hide
Query:  LLGLRKSLLGDDT-LEVLIRWENTLKDDATWESAADISTQFPSFHLEDKVASWGGG
        L+G+R+ LLG    LEVLIRWEN  + +A+WES   ++ QFP FHLEDKV  WGGG
Subjt:  LLGLRKSLLGDDT-LEVLIRWENTLKDDATWESAADISTQFPSFHLEDKVASWGGG

KAA0039528.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]7.7e-0754.55Show/hide
Query:  LLGLRKSLLGDDTLEVLIRWENTLKDDATWESAADISTQFPSFHLEDKVASWGGG
        +LG+RK+   +D LEVLIRW     + ATWE A  I  QFP FHL+DKV  WG G
Subjt:  LLGLRKSLLGDDTLEVLIRWENTLKDDATWESAADISTQFPSFHLEDKVASWGGG

KAA0058453.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]7.7e-0758.18Show/hide
Query:  LLGLRKSLLGDDTLEVLIRWENTLKDDATWESAADISTQFPSFHLEDKVASWGGG
        +LG RK+   DD LEVLIRW +   + ATWE A  I  QF  FHLEDKVA WG G
Subjt:  LLGLRKSLLGDDTLEVLIRWENTLKDDATWESAADISTQFPSFHLEDKVASWGGG

TYK29006.1 ATP-dependent DNA helicase-like protein RECG [Cucumis melo var. makuwa]1.1e-0535.35Show/hide
Query:  LLGLRKSLLGDDTLEVLIRWENTLKDDATWESAADISTQFPSFHLEDKVASWGGGAVDYLTEWTATFFRGHWH----IPSSKHSCHFMAFETVMIHVIG
        +LG+ K   G+D+LEVLIRW+    + ATWE A  +  QF  FHLEDK A WG           A+  R  W     + ++ H   F +   + +H++G
Subjt:  LLGLRKSLLGDDTLEVLIRWENTLKDDATWESAADISTQFPSFHLEDKVASWGGGAVDYLTEWTATFFRGHWH----IPSSKHSCHFMAFETVMIHVIG

TrEMBL top hitse value%identityAlignment
A0A5D3C5W9 Retrotransposable element Tf23.7e-0758.18Show/hide
Query:  LLGLRKSLLGDDTLEVLIRWENTLKDDATWESAADISTQFPSFHLEDKVASWGGG
        +LG RK+   DD LEVLIRW +   + ATWE A  I  QF  FHLEDKVA WG G
Subjt:  LLGLRKSLLGDDTLEVLIRWENTLKDDATWESAADISTQFPSFHLEDKVASWGGG

A0A5D3CTU6 Ty3-gypsy retrotransposon protein3.7e-0754.55Show/hide
Query:  LLGLRKSLLGDDTLEVLIRWENTLKDDATWESAADISTQFPSFHLEDKVASWGGG
        +LG+RK+   +D LEVLIRW     + ATWE A  I  QFP FHL+DKV  WG G
Subjt:  LLGLRKSLLGDDTLEVLIRWENTLKDDATWESAADISTQFPSFHLEDKVASWGGG

A0A5D3DZB1 ATP-dependent DNA helicase-like protein RECG5.4e-0635.35Show/hide
Query:  LLGLRKSLLGDDTLEVLIRWENTLKDDATWESAADISTQFPSFHLEDKVASWGGGAVDYLTEWTATFFRGHWH----IPSSKHSCHFMAFETVMIHVIG
        +LG+ K   G+D+LEVLIRW+    + ATWE A  +  QF  FHLEDK A WG           A+  R  W     + ++ H   F +   + +H++G
Subjt:  LLGLRKSLLGDDTLEVLIRWENTLKDDATWESAADISTQFPSFHLEDKVASWGGGAVDYLTEWTATFFRGHWH----IPSSKHSCHFMAFETVMIHVIG

G9FIF5 Uncharacterized protein9.1e-0646.43Show/hide
Query:  LLGLRKSLLGDDT-LEVLIRWENTLKDDATWESAADISTQFPSFHLEDKVASWGGG
        +LG+R + L      E+L++W +   D+ATWE+  DI  +FP+FHLEDKV +W GG
Subjt:  LLGLRKSLLGDDT-LEVLIRWENTLKDDATWESAADISTQFPSFHLEDKVASWGGG

W9S666 G patch domain-containing protein 13.4e-0858.93Show/hide
Query:  LLGLRKSLLGDDT-LEVLIRWENTLKDDATWESAADISTQFPSFHLEDKVASWGGG
        L+G+R+ LLG    LEVLIRWEN  + +A+WES   ++ QFP FHLEDKV  WGGG
Subjt:  LLGLRKSLLGDDT-LEVLIRWENTLKDDATWESAADISTQFPSFHLEDKVASWGGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGCTGCTGGGGCTTCGAAAATCCTTACTTGGAGATGATACACTGGAGGTGCTCATTAGATGGGAAAATACCTTGAAGGATGATGCAACATGGGAGTCCGCTGCCGA
CATTAGTACACAATTCCCATCTTTTCACCTTGAGGACAAGGTGGCTTCTTGGGGGGGGGGGGCGGTGGATTACTTGACAGAGTGGACAGCTACATTTTTTCGGGGGCACT
GGCATATTCCTTCATCAAAACATTCATGCCACTTTATGGCGTTTGAGACAGTGATGATCCATGTAATTGGGAATCAGGAAAGTGCAACTCTCGAGGGGTTTCATCTTGTA
ATGCTCCTTACATTTGCATTTACTGTCCGAGGCTTAGAGTTTGTTGCTCCTTCACTGCTACTAGGCGGAAGTGCTTCATGTTTTTTCATTTTCTCAGCCATCAGGATGAC
AGCTCTTGCATCTCTTGTGGGGATGACAGTTCTTTCCACGTGGACAGGTCCATGCCAATCTGAGAAGCACGAACACTTTAGTTTAGCTAGCATGTCCGTGTCCGACACGT
GTCGGACACTTGGACACTCCGACACTTGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGCTGCTGGGGCTTCGAAAATCCTTACTTGGAGATGATACACTGGAGGTGCTCATTAGATGGGAAAATACCTTGAAGGATGATGCAACATGGGAGTCCGCTGCCGA
CATTAGTACACAATTCCCATCTTTTCACCTTGAGGACAAGGTGGCTTCTTGGGGGGGGGGGGCGGTGGATTACTTGACAGAGTGGACAGCTACATTTTTTCGGGGGCACT
GGCATATTCCTTCATCAAAACATTCATGCCACTTTATGGCGTTTGAGACAGTGATGATCCATGTAATTGGGAATCAGGAAAGTGCAACTCTCGAGGGGTTTCATCTTGTA
ATGCTCCTTACATTTGCATTTACTGTCCGAGGCTTAGAGTTTGTTGCTCCTTCACTGCTACTAGGCGGAAGTGCTTCATGTTTTTTCATTTTCTCAGCCATCAGGATGAC
AGCTCTTGCATCTCTTGTGGGGATGACAGTTCTTTCCACGTGGACAGGTCCATGCCAATCTGAGAAGCACGAACACTTTAGTTTAGCTAGCATGTCCGTGTCCGACACGT
GTCGGACACTTGGACACTCCGACACTTGTTAG
Protein sequenceShow/hide protein sequence
MGLLGLRKSLLGDDTLEVLIRWENTLKDDATWESAADISTQFPSFHLEDKVASWGGGAVDYLTEWTATFFRGHWHIPSSKHSCHFMAFETVMIHVIGNQESATLEGFHLV
MLLTFAFTVRGLEFVAPSLLLGGSASCFFIFSAIRMTALASLVGMTVLSTWTGPCQSEKHEHFSLASMSVSDTCRTLGHSDTC