CuGenDBv2

Gene ID	Lag0015880
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Ribonuclease H
Genome location	chr12:27974233..27979793
RNA-Seq Expression	Lag0015880
Synteny	Lag0015880
Gene Ontology terms	GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0030430 - host cell cytoplasm (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]

6.5e-59

88.64

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Query:  MYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQERVGEALWAYQTTYRTPTGATPYSLVYGVEVVLPLEREIPSLRMAVQEGLTVEDNAKLRLQELEALD
        MYNAAANGLAEAFNKTLC+LLKKVVSKTKRDWQE++GEALWAY+TT+RTPTG TPYSLVYGVE VLPLEREIPSLRMA+QEGLT EDNA+LRL+ELEALD
Subjt:  MYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQERVGEALWAYQTTYRTPTGATPYSLVYGVEVVLPLEREIPSLRMAVQEGLTVEDNAKLRLQELEALD

Query:  EKRLDAQQALDCYQARMSKAFNKKVRPRSFQV
        EKRL+AQQAL+CYQARMSKAF+K+VRPRSFQV
Subjt:  EKRLDAQQALDCYQARMSKAFNKKVRPRSFQV

KAA0048376.1 uncharacterized protein E6C27_scaffold264G00950 [Cucumis melo var. makuwa]

2.2e-59

89.39

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Query:  MYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQERVGEALWAYQTTYRTPTGATPYSLVYGVEVVLPLEREIPSLRMAVQEGLTVEDNAKLRLQELEALD
        MYNAAANGLAEAFNKTLC+LLKKVVSKTKRDWQE++GEALWAY+TT+RTPTG TPYSLVYGVEVVLPLEREIPSLRMA+QEGLT EDNA+LRLQELEALD
Subjt:  MYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQERVGEALWAYQTTYRTPTGATPYSLVYGVEVVLPLEREIPSLRMAVQEGLTVEDNAKLRLQELEALD

Query:  EKRLDAQQALDCYQARMSKAFNKKVRPRSFQV
        EKRL+AQQAL+CYQARMSKAF+K+V+PRSFQV
Subjt:  EKRLDAQQALDCYQARMSKAFNKKVRPRSFQV

KAA0050517.1 uncharacterized protein E6C27_scaffold175G001610 [Cucumis melo var. makuwa]

1.7e-59

86.23

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Query:  MYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQERVGEALWAYQTTYRTPTGATPYSLVYGVEVVLPLEREIPSLRMAVQEGLTVEDNAKLRLQELEALD
        MYNAAANGLAEAFNKTLC+LLKKVVSKTKRDWQE++GEALWAY+TT+RTPTG TPYSLVYGVE VLPLE+EIPSLRMA+QEGLT EDNA+LRLQELEALD
Subjt:  MYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQERVGEALWAYQTTYRTPTGATPYSLVYGVEVVLPLEREIPSLRMAVQEGLTVEDNAKLRLQELEALD

Query:  EKRLDAQQALDCYQARMSKAFNKKVRPRSFQVVCILHA
        EKRL+AQQAL+CYQARMSKAFNK+VRPRSFQV  ++ A
Subjt:  EKRLDAQQALDCYQARMSKAFNKKVRPRSFQVVCILHA

KAA0065376.1 uncharacterized protein E6C27_scaffold17G00380 [Cucumis melo var. makuwa]

2.2e-59

81.29

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Query:  MYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQERVGEALWAYQTTYRTPTGATPYSLVYGVEVVLPLEREIPSLRMAVQEGLTVEDNAKLRLQELEALD
        MYNAAANGLAEAFNKTLC+LLKKVVSKTKRDWQE++GEALWAY+TT+RTPTG TPYSLVYGVE VLPLEREIPSLRMA+QEGLT EDNA+LRLQELEALD
Subjt:  MYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQERVGEALWAYQTTYRTPTGATPYSLVYGVEVVLPLEREIPSLRMAVQEGLTVEDNAKLRLQELEALD

Query:  EKRLDAQQALDCYQARMSKAFNKKVRPRSFQVVCILHASSLVFRSLKVRRLTFST
        EKRL+AQQAL+CYQARMSKAF K+VRPRSFQV        LV   L VRRL  +T
Subjt:  EKRLDAQQALDCYQARMSKAFNKKVRPRSFQVVCILHASSLVFRSLKVRRLTFST

TYK18071.1 uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa]

2.9e-59

89.39

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Query:  MYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQERVGEALWAYQTTYRTPTGATPYSLVYGVEVVLPLEREIPSLRMAVQEGLTVEDNAKLRLQELEALD
        MYNAAANGLAEAFNKTLC+LLKKVVSKTKRDWQE++GEALWAY+TT+RTPTG TPYSLVYGVE VLPLEREIPSLRMA+QEGLT EDNA+LRLQELEALD
Subjt:  MYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQERVGEALWAYQTTYRTPTGATPYSLVYGVEVVLPLEREIPSLRMAVQEGLTVEDNAKLRLQELEALD

Query:  EKRLDAQQALDCYQARMSKAFNKKVRPRSFQV
        EKRL+AQQAL+CYQARMSKAF+K+VRPRSFQV
Subjt:  EKRLDAQQALDCYQARMSKAFNKKVRPRSFQV

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TZU9 Ribonuclease H

3.2e-59

88.64

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Query:  MYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQERVGEALWAYQTTYRTPTGATPYSLVYGVEVVLPLEREIPSLRMAVQEGLTVEDNAKLRLQELEALD
        MYNAAANGLAEAFNKTLC+LLKKVVSKTKRDWQE++GEALWAY+TT+RTPTG TPYSLVYGVE VLPLEREIPSLRMA+QEGLT EDNA+LRL+ELEALD
Subjt:  MYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQERVGEALWAYQTTYRTPTGATPYSLVYGVEVVLPLEREIPSLRMAVQEGLTVEDNAKLRLQELEALD

Query:  EKRLDAQQALDCYQARMSKAFNKKVRPRSFQV
        EKRL+AQQAL+CYQARMSKAF+K+VRPRSFQV
Subjt:  EKRLDAQQALDCYQARMSKAFNKKVRPRSFQV

A0A5A7U2B8 Reverse transcriptase

1.1e-59

89.39

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Query:  MYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQERVGEALWAYQTTYRTPTGATPYSLVYGVEVVLPLEREIPSLRMAVQEGLTVEDNAKLRLQELEALD
        MYNAAANGLAEAFNKTLC+LLKKVVSKTKRDWQE++GEALWAY+TT+RTPTG TPYSLVYGVEVVLPLEREIPSLRMA+QEGLT EDNA+LRLQELEALD
Subjt:  MYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQERVGEALWAYQTTYRTPTGATPYSLVYGVEVVLPLEREIPSLRMAVQEGLTVEDNAKLRLQELEALD

Query:  EKRLDAQQALDCYQARMSKAFNKKVRPRSFQV
        EKRL+AQQAL+CYQARMSKAF+K+V+PRSFQV
Subjt:  EKRLDAQQALDCYQARMSKAFNKKVRPRSFQV

A0A5A7U804 Uncharacterized protein

8.3e-60

86.23

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Query:  MYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQERVGEALWAYQTTYRTPTGATPYSLVYGVEVVLPLEREIPSLRMAVQEGLTVEDNAKLRLQELEALD
        MYNAAANGLAEAFNKTLC+LLKKVVSKTKRDWQE++GEALWAY+TT+RTPTG TPYSLVYGVE VLPLE+EIPSLRMA+QEGLT EDNA+LRLQELEALD
Subjt:  MYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQERVGEALWAYQTTYRTPTGATPYSLVYGVEVVLPLEREIPSLRMAVQEGLTVEDNAKLRLQELEALD

Query:  EKRLDAQQALDCYQARMSKAFNKKVRPRSFQVVCILHA
        EKRL+AQQAL+CYQARMSKAFNK+VRPRSFQV  ++ A
Subjt:  EKRLDAQQALDCYQARMSKAFNKKVRPRSFQVVCILHA

A0A5A7VGB3 Ribonuclease H

1.1e-59

81.29

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Query:  MYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQERVGEALWAYQTTYRTPTGATPYSLVYGVEVVLPLEREIPSLRMAVQEGLTVEDNAKLRLQELEALD
        MYNAAANGLAEAFNKTLC+LLKKVVSKTKRDWQE++GEALWAY+TT+RTPTG TPYSLVYGVE VLPLEREIPSLRMA+QEGLT EDNA+LRLQELEALD
Subjt:  MYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQERVGEALWAYQTTYRTPTGATPYSLVYGVEVVLPLEREIPSLRMAVQEGLTVEDNAKLRLQELEALD

Query:  EKRLDAQQALDCYQARMSKAFNKKVRPRSFQVVCILHASSLVFRSLKVRRLTFST
        EKRL+AQQAL+CYQARMSKAF K+VRPRSFQV        LV   L VRRL  +T
Subjt:  EKRLDAQQALDCYQARMSKAFNKKVRPRSFQVVCILHASSLVFRSLKVRRLTFST

A0A5D3D1E5 Ribonuclease H

1.4e-59

89.39

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Query:  MYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQERVGEALWAYQTTYRTPTGATPYSLVYGVEVVLPLEREIPSLRMAVQEGLTVEDNAKLRLQELEALD
        MYNAAANGLAEAFNKTLC+LLKKVVSKTKRDWQE++GEALWAY+TT+RTPTG TPYSLVYGVE VLPLEREIPSLRMA+QEGLT EDNA+LRLQELEALD
Subjt:  MYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQERVGEALWAYQTTYRTPTGATPYSLVYGVEVVLPLEREIPSLRMAVQEGLTVEDNAKLRLQELEALD

Query:  EKRLDAQQALDCYQARMSKAFNKKVRPRSFQV
        EKRL+AQQAL+CYQARMSKAF+K+VRPRSFQV
Subjt:  EKRLDAQQALDCYQARMSKAFNKKVRPRSFQV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTACAATGCTGCTGCGAATGGGTTGGCCGAAGCATTCAACAAGACATTATGCAACTTGTTGAAGAAAGTAGTCTCCAAGACGAAGAGAGACTGGCAAGAAAGAGTTGG
CGAAGCGTTATGGGCATACCAGACCACTTATCGTACTCCAACAGGAGCCACACCCTACTCTCTTGTCTATGGAGTAGAAGTTGTTCTCCCTCTAGAAAGAGAGATCCCAT
CGTTGCGAATGGCGGTGCAAGAAGGTTTGACTGTAGAAGACAATGCTAAGTTACGTCTTCAAGAGTTAGAAGCATTAGATGAGAAAAGACTGGATGCTCAACAAGCTTTG
GACTGTTATCAAGCGCGCATGTCTAAAGCTTTCAACAAAAAGGTACGACCTCGTTCATTTCAAGTTGTTTGCATTCTTCATGCTTCAAGTTTGGTGTTCCGCTCGCTCAA
AGTTCGACGTCTCACCTTCTCCACGTTCGGCGATTGCTCCATTCAAGTTTGGCTTATCACTTGTCCTAAGTTCGATACCTCACTTCACTTTAAAGGGTGGCAGTTGACGA
CTTCGCTTCGTTTTCAAAAGTTGGCAGTTGAAAGTCTTGCTCCATCTCAGTCAACAGCTTTGTTTCATCTTCAAAGGCTACTCAGATCACCCAATAAAATGGGGACTGGT
CTAGCAGGAGCACATCACTGCGAATCTGGTGACCACCCCTGCAGGTTACTCAGATCATCCAATAAAATGGAGACTGGTCTAGCAGGAGCACATCACTGTAGGCGAATCTG
GTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATCACTGTAGGCAAATCTGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAG
TGCATCACTGCAAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGGAGGAGTGCATCACTGTAGGCGAATCTGGTTACTCAGA
TCACCCAATGAAATAGGGGACTGGTCTAGCAGGAGTGAAATCACTGCAAGTGAATTTGGTGACGACTGTTGCACGATGCTTACACGTTCAAAGTCAAAGAAGTCAGAGCC
CAAAGCATTCTCCCAAGTCCAGAGTCTTCAAAAGTCAGAGAGTCCAGAGAATTCAGAAGATCCAAGATTCAGAATTCGGCCATCTGAGACTATGAAGATCCAACGACTGG
AAGACTCCAAAGAATCAACCGTTTCTTCATCAAGATACAAGTTGAAGATTCAACCTTCCTCCGTCTGA

mRNA sequence

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Protein sequence

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MYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQERVGEALWAYQTTYRTPTGATPYSLVYGVEVVLPLEREIPSLRMAVQEGLTVEDNAKLRLQELEALDEKRLDAQQAL
DCYQARMSKAFNKKVRPRSFQVVCILHASSLVFRSLKVRRLTFSTFGDCSIQVWLITCPKFDTSLHFKGWQLTTSLRFQKLAVESLAPSQSTALFHLQRLLRSPNKMGTG
LAGAHHCESGDHPCRLLRSSNKMETGLAGAHHCRRIWLLRSPNKMGTGLAGVHHCRQIWLLRSPNKMGTGLAGVHHCKSGDYPCRLLRSPNKMGTGLGGVHHCRRIWLLR
SPNEIGDWSSRSEITASEFGDDCCTMLTRSKSKKSEPKAFSQVQSLQKSESPENSEDPRFRIRPSETMKIQRLEDSKESTVSSSRYKLKIQPSSV

Lag0015880 (gene) of Sponge gourd (AG-4) v1 genome