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Lag0015899 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015899
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr12:28472630..28472986
RNA-Seq ExpressionLag0015899
SyntenyLag0015899
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO70721.1 Zinc finger, CCHC-type [Corchorus olitorius]3.0e-1440.78Show/hide
Query:  RSMAERLGNAIGQFQEYDNGGRGYGWKESLRVRIILVITRPFRRGIKVRLDDPLGSVWTPIKYEKLPEICSYCGRIGHVTKDCTFSFVYECSSARCHEYG
        R MAE +G  IG+  + D    G GW + LRVR+ + +T+P RR I V+ DD  G++   + YE+ P  C  CGRIGHV++DC+   V +       +YG
Subjt:  RSMAERLGNAIGQFQEYDNGGRGYGWKESLRVRIILVITRPFRRGIKVRLDDPLGSVWTPIKYEKLPEICSYCGRIGHVTKDCTFSFVYECSSARCHEYG

Query:  MWM
         WM
Subjt:  MWM

XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]8.2e-2042.61Show/hide
Query:  NRSMAERLGNAIGQFQEYDNGGRGYGWKESLRVRIILVITRPFRRGIKVRLDDPLGSVWTPIKYEKLPEICSYCGRIGHVTKDCTFSFVYECSSARCHEY
        N++MA RLGNAIG F++ ++    + W   LRVR+   + +P  RGIK+ LD P+G  W PI+YE+LP+   +CGR+ H+ KDC+   V   S ++  +Y
Subjt:  NRSMAERLGNAIGQFQEYDNGGRGYGWKESLRVRIILVITRPFRRGIKVRLDDPLGSVWTPIKYEKLPEICSYCGRIGHVTKDCTFSFVYECSSARCHEY

Query:  GMWMSFTG--RSSNV
        G W+ F G   SSN+
Subjt:  GMWMSFTG--RSSNV

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]2.5e-2446.02Show/hide
Query:  MDLYNRSMAERLGNAIGQFQEYDNGGRGYGWKESLRVRIILVITRPFRRGIKVRLDDPLGSVWTPIKYEKLPEICSYCGRIGHVTKDCTFSFVYECSSAR
        M   N++MA RLGNAIG F + D   +G+ W  SLR+R+++ IT+P RRGIK+ +D P+G  W PI+YE+LP+ C +CG IGH + DC   ++     +R
Subjt:  MDLYNRSMAERLGNAIGQFQEYDNGGRGYGWKESLRVRIILVITRPFRRGIKVRLDDPLGSVWTPIKYEKLPEICSYCGRIGHVTKDCTFSFVYECSSAR

Query:  C-HEYGMWMSFTG
           EYG W+ F G
Subjt:  C-HEYGMWMSFTG

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]3.8e-1742.99Show/hide
Query:  RSMAERLGNAIGQFQEYDNGGRGYGWKESLRVRIILVITRPFRRGIKVRLDDPLGSVWTPIKYEKLPEICSYCGRIGHVTKDCTFSFVYECSSARCHEYG
        R MA RLGNA+G F+E D       W  +LRVR++L I++P RRGIK+ LD P+G  W PI+YE+LP+ C +CG                 SS + H+YG
Subjt:  RSMAERLGNAIGQFQEYDNGGRGYGWKESLRVRIILVITRPFRRGIKVRLDDPLGSVWTPIKYEKLPEICSYCGRIGHVTKDCTFSFVYECSSARCHEYG

Query:  MWMSFTG
         W+ + G
Subjt:  MWMSFTG

XP_028124075.1 uncharacterized protein LOC114321128 [Camellia sinensis]7.5e-1333.94Show/hide
Query:  LYNRSMAERLGNAIGQFQEYDNGGRGYGWKESLRVRIILVITRPFRRGIKVRLD--DPLGSVWTPIKYEKLPEICSYCGRIGHVTKDCTFSFVY-ECSSA
        L N+ + + +GNA+GQF + D    G  W  ++R+R+ + + +P RRG+K+ L   DP   +W   KYE+LP  C +CGR+GH  ++C     + + +  
Subjt:  LYNRSMAERLGNAIGQFQEYDNGGRGYGWKESLRVRIILVITRPFRRGIKVRLD--DPLGSVWTPIKYEKLPEICSYCGRIGHVTKDCTFSFVY-ECSSA

Query:  RCHEYGMWM
           +YG W+
Subjt:  RCHEYGMWM

TrEMBL top hitse value%identityAlignment
A0A1R3HK95 Zinc finger, CCHC-type1.5e-1440.78Show/hide
Query:  RSMAERLGNAIGQFQEYDNGGRGYGWKESLRVRIILVITRPFRRGIKVRLDDPLGSVWTPIKYEKLPEICSYCGRIGHVTKDCTFSFVYECSSARCHEYG
        R MAE +G  IG+  + D    G GW + LRVR+ + +T+P RR I V+ DD  G++   + YE+ P  C  CGRIGHV++DC+   V +       +YG
Subjt:  RSMAERLGNAIGQFQEYDNGGRGYGWKESLRVRIILVITRPFRRGIKVRLDDPLGSVWTPIKYEKLPEICSYCGRIGHVTKDCTFSFVYECSSARCHEYG

Query:  MWM
         WM
Subjt:  MWM

A0A2N9FJU7 CCHC-type domain-containing protein1.5e-1441.12Show/hide
Query:  LYNRSMAERLGNAIGQFQEYDNGGRGYGWKESLRVRIILVITRPFRRGIKVRLDDPLGSVWTPIKYEKLPEICSYCGRIGHVTKDCTFSFVYECS-SARC
        L+N+   ER+GNAIG  +E D    G GW   L VRI L IT+PF RG  +     LG +W   KYE++P IC +CGR+GH+ +DC        +     
Subjt:  LYNRSMAERLGNAIGQFQEYDNGGRGYGWKESLRVRIILVITRPFRRGIKVRLDDPLGSVWTPIKYEKLPEICSYCGRIGHVTKDCTFSFVYECS-SARC

Query:  HEYGMWM
         +YG W+
Subjt:  HEYGMWM

A0A6J1BSZ1 uncharacterized protein LOC1110054814.0e-2042.61Show/hide
Query:  NRSMAERLGNAIGQFQEYDNGGRGYGWKESLRVRIILVITRPFRRGIKVRLDDPLGSVWTPIKYEKLPEICSYCGRIGHVTKDCTFSFVYECSSARCHEY
        N++MA RLGNAIG F++ ++    + W   LRVR+   + +P  RGIK+ LD P+G  W PI+YE+LP+   +CGR+ H+ KDC+   V   S ++  +Y
Subjt:  NRSMAERLGNAIGQFQEYDNGGRGYGWKESLRVRIILVITRPFRRGIKVRLDDPLGSVWTPIKYEKLPEICSYCGRIGHVTKDCTFSFVYECSSARCHEY

Query:  GMWMSFTG--RSSNV
        G W+ F G   SSN+
Subjt:  GMWMSFTG--RSSNV

A0A6J1DU55 uncharacterized protein LOC1110231351.2e-2446.02Show/hide
Query:  MDLYNRSMAERLGNAIGQFQEYDNGGRGYGWKESLRVRIILVITRPFRRGIKVRLDDPLGSVWTPIKYEKLPEICSYCGRIGHVTKDCTFSFVYECSSAR
        M   N++MA RLGNAIG F + D   +G+ W  SLR+R+++ IT+P RRGIK+ +D P+G  W PI+YE+LP+ C +CG IGH + DC   ++     +R
Subjt:  MDLYNRSMAERLGNAIGQFQEYDNGGRGYGWKESLRVRIILVITRPFRRGIKVRLDDPLGSVWTPIKYEKLPEICSYCGRIGHVTKDCTFSFVYECSSAR

Query:  C-HEYGMWMSFTG
           EYG W+ F G
Subjt:  C-HEYGMWMSFTG

A0A6J1DX30 uncharacterized protein LOC1110248741.9e-1742.99Show/hide
Query:  RSMAERLGNAIGQFQEYDNGGRGYGWKESLRVRIILVITRPFRRGIKVRLDDPLGSVWTPIKYEKLPEICSYCGRIGHVTKDCTFSFVYECSSARCHEYG
        R MA RLGNA+G F+E D       W  +LRVR++L I++P RRGIK+ LD P+G  W PI+YE+LP+ C +CG                 SS + H+YG
Subjt:  RSMAERLGNAIGQFQEYDNGGRGYGWKESLRVRIILVITRPFRRGIKVRLDDPLGSVWTPIKYEKLPEICSYCGRIGHVTKDCTFSFVYECSSARCHEYG

Query:  MWMSFTG
         W+ + G
Subjt:  MWMSFTG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTATATAATCGATCGATGGCAGAAAGATTGGGCAATGCAATTGGCCAGTTCCAGGAGTACGATAATGGCGGGCGAGGATACGGATGGAAGGAGAGCCTTAGAGT
TCGAATTATTCTAGTCATTACGCGCCCCTTTCGTCGTGGCATTAAGGTACGTCTTGATGATCCATTGGGTAGTGTCTGGACTCCTATCAAATATGAGAAACTACCTGAAA
TTTGTTCTTATTGTGGTCGGATAGGACATGTAACAAAGGACTGTACTTTTTCCTTTGTTTACGAGTGTTCCTCTGCTCGGTGCCATGAATATGGCATGTGGATGTCTTTT
ACCGGTCGATCCTCGAATGTTTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTTATATAATCGATCGATGGCAGAAAGATTGGGCAATGCAATTGGCCAGTTCCAGGAGTACGATAATGGCGGGCGAGGATACGGATGGAAGGAGAGCCTTAGAGT
TCGAATTATTCTAGTCATTACGCGCCCCTTTCGTCGTGGCATTAAGGTACGTCTTGATGATCCATTGGGTAGTGTCTGGACTCCTATCAAATATGAGAAACTACCTGAAA
TTTGTTCTTATTGTGGTCGGATAGGACATGTAACAAAGGACTGTACTTTTTCCTTTGTTTACGAGTGTTCCTCTGCTCGGTGCCATGAATATGGCATGTGGATGTCTTTT
ACCGGTCGATCCTCGAATGTTTTTTGA
Protein sequenceShow/hide protein sequence
MDLYNRSMAERLGNAIGQFQEYDNGGRGYGWKESLRVRIILVITRPFRRGIKVRLDDPLGSVWTPIKYEKLPEICSYCGRIGHVTKDCTFSFVYECSSARCHEYGMWMSF
TGRSSNVF