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Lag0015917 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015917
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposable element Tf2
Genome locationchr12:29131083..29134059
RNA-Seq ExpressionLag0015917
SyntenyLag0015917
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032916.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]8.5e-4333.76Show/hide
Query:  IEPEFQGLNLEETISNMYPSGFNFMPEDLNKTRTFYEFILVDTKSAEITHIPDKNDPSKIAYSKFKIFKALNPTHWNQGLYTDKSFSKPFAPQTYSYRDY
        IEPEF G +++E  S ++P GFNF+PEDL+KTRTFYE+ILVD+KSAEITH+PDKNDPSKI YSK +IF+ L P++W QG++  + FS PF P +Y+YRDY
Subjt:  IEPEFQGLNLEETISNMYPSGFNFMPEDLNKTRTFYEFILVDTKSAEITHIPDKNDPSKIAYSKFKIFKALNPTHWNQGLYTDKSFSKPFAPQTYSYRDY

Query:  VRA------------------CNQP---------------------------------------------------------------------QYKTIT
         +A                  C Q                                                                       +K ++
Subjt:  VRA------------------CNQP---------------------------------------------------------------------QYKTIT

Query:  KILKIKWWDKFNFQNATINKVKEWFAANGYHQDIDIKRNAEFLNDKSKLLAALAQTTSDADFERILQ------AASSDRSASPASSAHEEEESEPDY---
        K L+IKWW+KFN+ +  +NK+K+WF AN + QD+  + +  FL  K+ +++ LA  ++  +F  ++       +  +D     AS A   +  + DY   
Subjt:  KILKIKWWDKFNFQNATINKVKEWFAANGYHQDIDIKRNAEFLNDKSKLLAALAQTTSDADFERILQ------AASSDRSASPASSAHEEEESEPDY---

Query:  ---DLDDPFLDSQP
           D++DPFLD+QP
Subjt:  ---DLDDPFLDSQP

KAA0032923.1 polyprotein [Cucumis melo var. makuwa]1.5e-4233.33Show/hide
Query:  SVIYEPIIEPEFQGLNLEETISNMYPSGFNFMPEDLNKTRTFYEFILVDTKSAEITHIPDKNDPSKIAYSKFKIFKALNPTHWNQGLYTDKSFSKPFAPQ
        + I +  IEPEF G +++E  S ++P GFNF+PEDL+KTRTFYE+ILVD+KSAEITH+PDKNDPSKI YSK +IF+ L P++W QG++  + FS PF P 
Subjt:  SVIYEPIIEPEFQGLNLEETISNMYPSGFNFMPEDLNKTRTFYEFILVDTKSAEITHIPDKNDPSKIAYSKFKIFKALNPTHWNQGLYTDKSFSKPFAPQ

Query:  TYSYRDYVRA------------------CNQP--------------------------------------------------------------------
        +Y+YRDY +A                  C Q                                                                     
Subjt:  TYSYRDYVRA------------------CNQP--------------------------------------------------------------------

Query:  -QYKTITKILKIKWWDKFNFQNATINKVKEWFAANGYHQDIDIKRNAEFLNDKSKLLAALAQTTSDADFERILQ------AASSDRSASPASSAHEEEES
          +K ++K L IKWW+KFN+ +  +NK+K+WF AN + QD+  + +  FL  K+ +++ LA  ++  +F  ++       +  +D     AS A   +  
Subjt:  -QYKTITKILKIKWWDKFNFQNATINKVKEWFAANGYHQDIDIKRNAEFLNDKSKLLAALAQTTSDADFERILQ------AASSDRSASPASSAHEEEES

Query:  EPDY------DLDDPFLDSQP
        + DY      D++DPFLD+QP
Subjt:  EPDY------DLDDPFLDSQP

KAA0038028.1 polyprotein [Cucumis melo var. makuwa]5.5e-5045.02Show/hide
Query:  IEPEFQGLNLEETISNMYPSGFNFMPEDLNKTRTFYEFILVDTKSAEITHIPDKNDPSKIAYSKFKIFKALNPTHWNQGLYTDKSFSKPFAPQTYSYRDY
        IEPEF G +++E  S ++P GFNF+PEDL+KTRTFYE+ILVD+KSAEITH+PDKNDPSKI YSK +IF+ L P++W QG++  + FS PF P +Y+YRDY
Subjt:  IEPEFQGLNLEETISNMYPSGFNFMPEDLNKTRTFYEFILVDTKSAEITHIPDKNDPSKIAYSKFKIFKALNPTHWNQGLYTDKSFSKPFAPQTYSYRDY

Query:  VRAC----NQPQYKTITKILKIKWWDKFNFQNATINKVKEWFAANGYHQDIDIKRNAEFLNDKSKLLAALAQTTSDADFERILQAA----SSD-----RS
         +A         +K ++K L+IKWW+KFN+ +  +NK+K+WF AN + QD+  + +  FL  K+ +++ L   ++  +F  ++       S D       
Subjt:  VRAC----NQPQYKTITKILKIKWWDKFNFQNATINKVKEWFAANGYHQDIDIKRNAEFLNDKSKLLAALAQTTSDADFERILQAA----SSD-----RS

Query:  ASPASSAHEEEESEPDY---DLDDPFLDSQP
         SPAS  + ++     Y   D++DPFLD+QP
Subjt:  ASPASSAHEEEESEPDY---DLDDPFLDSQP

KAA0050447.1 polyprotein [Cucumis melo var. makuwa]1.7e-4643.61Show/hide
Query:  IEPEFQGLNLEETISNMYPSGFNFMPEDLNKTRTFYEFILVDTKSAEITHIPDKNDPSKIAYSKFKIFKALNPTHWNQGLYTDKSFSKPFAPQTYSYRDY
        IEPEF G  + E  + ++P  FNF+PEDL+KTRTFYE+ILVD+KSAEITH+PDKNDPSKI YSKF+IF+ L P++W QG++  + FS PF P +Y+YR  
Subjt:  IEPEFQGLNLEETISNMYPSGFNFMPEDLNKTRTFYEFILVDTKSAEITHIPDKNDPSKIAYSKFKIFKALNPTHWNQGLYTDKSFSKPFAPQTYSYRDY

Query:  VRACNQPQYKTITKILKIKWWDKFNFQNATINKVKEWFAANGYHQDIDIKRNAEFLNDKSKLLAALAQTTSDADFERILQ------AASSDRSASPASSA
                +K ++K L IKWW+KFN+ +  +NK+K+WF AN + Q++  + +  FL  K+ +++ LA  ++  +F  ++       +  +D     AS A
Subjt:  VRACNQPQYKTITKILKIKWWDKFNFQNATINKVKEWFAANGYHQDIDIKRNAEFLNDKSKLLAALAQTTSDADFERILQ------AASSDRSASPASSA

Query:  HEEEESEPDY------DLDDPFLDSQP
           +  + DY      D++DPFLD+QP
Subjt:  HEEEESEPDY------DLDDPFLDSQP

TYK28077.1 polyprotein [Cucumis melo var. makuwa]2.5e-4233.76Show/hide
Query:  IEPEFQGLNLEETISNMYPSGFNFMPEDLNKTRTFYEFILVDTKSAEITHIPDKNDPSKIAYSKFKIFKALNPTHWNQGLYTDKSFSKPFAPQTYSYRDY
        IEPEF G +++E  S ++P GFNF+PEDL+KTRTFYE+ILVD+KSAEITH+PDKNDPSKI YSK +IF+ L P++W QG++  + FS PF P +Y+YRDY
Subjt:  IEPEFQGLNLEETISNMYPSGFNFMPEDLNKTRTFYEFILVDTKSAEITHIPDKNDPSKIAYSKFKIFKALNPTHWNQGLYTDKSFSKPFAPQTYSYRDY

Query:  VRA------------------CNQP---------------------------------------------------------------------QYKTIT
         +A                  C Q                                                                       +K ++
Subjt:  VRA------------------CNQP---------------------------------------------------------------------QYKTIT

Query:  KILKIKWWDKFNFQNATINKVKEWFAANGYHQDIDIKRNAEFLNDKSKLLAALAQTTSDADFERILQ------AASSDRSASPASSAHEEEESEPDY---
        K L IKWW+KFN+ +  +NK+K+WF AN + QD+  + +  FL  K+ +++ LA  ++  +F  ++       +  +D     AS A   +  + DY   
Subjt:  KILKIKWWDKFNFQNATINKVKEWFAANGYHQDIDIKRNAEFLNDKSKLLAALAQTTSDADFERILQ------AASSDRSASPASSAHEEEESEPDY---

Query:  ---DLDDPFLDSQP
           D++DPFLD+QP
Subjt:  ---DLDDPFLDSQP

TrEMBL top hitse value%identityAlignment
A0A5A7SR64 Polyprotein7.0e-4333.33Show/hide
Query:  SVIYEPIIEPEFQGLNLEETISNMYPSGFNFMPEDLNKTRTFYEFILVDTKSAEITHIPDKNDPSKIAYSKFKIFKALNPTHWNQGLYTDKSFSKPFAPQ
        + I +  IEPEF G +++E  S ++P GFNF+PEDL+KTRTFYE+ILVD+KSAEITH+PDKNDPSKI YSK +IF+ L P++W QG++  + FS PF P 
Subjt:  SVIYEPIIEPEFQGLNLEETISNMYPSGFNFMPEDLNKTRTFYEFILVDTKSAEITHIPDKNDPSKIAYSKFKIFKALNPTHWNQGLYTDKSFSKPFAPQ

Query:  TYSYRDYVRA------------------CNQP--------------------------------------------------------------------
        +Y+YRDY +A                  C Q                                                                     
Subjt:  TYSYRDYVRA------------------CNQP--------------------------------------------------------------------

Query:  -QYKTITKILKIKWWDKFNFQNATINKVKEWFAANGYHQDIDIKRNAEFLNDKSKLLAALAQTTSDADFERILQ------AASSDRSASPASSAHEEEES
          +K ++K L IKWW+KFN+ +  +NK+K+WF AN + QD+  + +  FL  K+ +++ LA  ++  +F  ++       +  +D     AS A   +  
Subjt:  -QYKTITKILKIKWWDKFNFQNATINKVKEWFAANGYHQDIDIKRNAEFLNDKSKLLAALAQTTSDADFERILQ------AASSDRSASPASSAHEEEES

Query:  EPDY------DLDDPFLDSQP
        + DY      D++DPFLD+QP
Subjt:  EPDY------DLDDPFLDSQP

A0A5A7SS94 Retrotransposable element Tf24.1e-4333.76Show/hide
Query:  IEPEFQGLNLEETISNMYPSGFNFMPEDLNKTRTFYEFILVDTKSAEITHIPDKNDPSKIAYSKFKIFKALNPTHWNQGLYTDKSFSKPFAPQTYSYRDY
        IEPEF G +++E  S ++P GFNF+PEDL+KTRTFYE+ILVD+KSAEITH+PDKNDPSKI YSK +IF+ L P++W QG++  + FS PF P +Y+YRDY
Subjt:  IEPEFQGLNLEETISNMYPSGFNFMPEDLNKTRTFYEFILVDTKSAEITHIPDKNDPSKIAYSKFKIFKALNPTHWNQGLYTDKSFSKPFAPQTYSYRDY

Query:  VRA------------------CNQP---------------------------------------------------------------------QYKTIT
         +A                  C Q                                                                       +K ++
Subjt:  VRA------------------CNQP---------------------------------------------------------------------QYKTIT

Query:  KILKIKWWDKFNFQNATINKVKEWFAANGYHQDIDIKRNAEFLNDKSKLLAALAQTTSDADFERILQ------AASSDRSASPASSAHEEEESEPDY---
        K L+IKWW+KFN+ +  +NK+K+WF AN + QD+  + +  FL  K+ +++ LA  ++  +F  ++       +  +D     AS A   +  + DY   
Subjt:  KILKIKWWDKFNFQNATINKVKEWFAANGYHQDIDIKRNAEFLNDKSKLLAALAQTTSDADFERILQ------AASSDRSASPASSAHEEEESEPDY---

Query:  ---DLDDPFLDSQP
           D++DPFLD+QP
Subjt:  ---DLDDPFLDSQP

A0A5A7T5B0 Polyprotein2.7e-5045.02Show/hide
Query:  IEPEFQGLNLEETISNMYPSGFNFMPEDLNKTRTFYEFILVDTKSAEITHIPDKNDPSKIAYSKFKIFKALNPTHWNQGLYTDKSFSKPFAPQTYSYRDY
        IEPEF G +++E  S ++P GFNF+PEDL+KTRTFYE+ILVD+KSAEITH+PDKNDPSKI YSK +IF+ L P++W QG++  + FS PF P +Y+YRDY
Subjt:  IEPEFQGLNLEETISNMYPSGFNFMPEDLNKTRTFYEFILVDTKSAEITHIPDKNDPSKIAYSKFKIFKALNPTHWNQGLYTDKSFSKPFAPQTYSYRDY

Query:  VRAC----NQPQYKTITKILKIKWWDKFNFQNATINKVKEWFAANGYHQDIDIKRNAEFLNDKSKLLAALAQTTSDADFERILQAA----SSD-----RS
         +A         +K ++K L+IKWW+KFN+ +  +NK+K+WF AN + QD+  + +  FL  K+ +++ L   ++  +F  ++       S D       
Subjt:  VRAC----NQPQYKTITKILKIKWWDKFNFQNATINKVKEWFAANGYHQDIDIKRNAEFLNDKSKLLAALAQTTSDADFERILQAA----SSD-----RS

Query:  ASPASSAHEEEESEPDY---DLDDPFLDSQP
         SPAS  + ++     Y   D++DPFLD+QP
Subjt:  ASPASSAHEEEESEPDY---DLDDPFLDSQP

A0A5A7U7T9 Polyprotein8.0e-4743.61Show/hide
Query:  IEPEFQGLNLEETISNMYPSGFNFMPEDLNKTRTFYEFILVDTKSAEITHIPDKNDPSKIAYSKFKIFKALNPTHWNQGLYTDKSFSKPFAPQTYSYRDY
        IEPEF G  + E  + ++P  FNF+PEDL+KTRTFYE+ILVD+KSAEITH+PDKNDPSKI YSKF+IF+ L P++W QG++  + FS PF P +Y+YR  
Subjt:  IEPEFQGLNLEETISNMYPSGFNFMPEDLNKTRTFYEFILVDTKSAEITHIPDKNDPSKIAYSKFKIFKALNPTHWNQGLYTDKSFSKPFAPQTYSYRDY

Query:  VRACNQPQYKTITKILKIKWWDKFNFQNATINKVKEWFAANGYHQDIDIKRNAEFLNDKSKLLAALAQTTSDADFERILQ------AASSDRSASPASSA
                +K ++K L IKWW+KFN+ +  +NK+K+WF AN + Q++  + +  FL  K+ +++ LA  ++  +F  ++       +  +D     AS A
Subjt:  VRACNQPQYKTITKILKIKWWDKFNFQNATINKVKEWFAANGYHQDIDIKRNAEFLNDKSKLLAALAQTTSDADFERILQ------AASSDRSASPASSA

Query:  HEEEESEPDY------DLDDPFLDSQP
           +  + DY      D++DPFLD+QP
Subjt:  HEEEESEPDY------DLDDPFLDSQP

A0A5D3DW87 Polyprotein1.2e-4233.76Show/hide
Query:  IEPEFQGLNLEETISNMYPSGFNFMPEDLNKTRTFYEFILVDTKSAEITHIPDKNDPSKIAYSKFKIFKALNPTHWNQGLYTDKSFSKPFAPQTYSYRDY
        IEPEF G +++E  S ++P GFNF+PEDL+KTRTFYE+ILVD+KSAEITH+PDKNDPSKI YSK +IF+ L P++W QG++  + FS PF P +Y+YRDY
Subjt:  IEPEFQGLNLEETISNMYPSGFNFMPEDLNKTRTFYEFILVDTKSAEITHIPDKNDPSKIAYSKFKIFKALNPTHWNQGLYTDKSFSKPFAPQTYSYRDY

Query:  VRA------------------CNQP---------------------------------------------------------------------QYKTIT
         +A                  C Q                                                                       +K ++
Subjt:  VRA------------------CNQP---------------------------------------------------------------------QYKTIT

Query:  KILKIKWWDKFNFQNATINKVKEWFAANGYHQDIDIKRNAEFLNDKSKLLAALAQTTSDADFERILQ------AASSDRSASPASSAHEEEESEPDY---
        K L IKWW+KFN+ +  +NK+K+WF AN + QD+  + +  FL  K+ +++ LA  ++  +F  ++       +  +D     AS A   +  + DY   
Subjt:  KILKIKWWDKFNFQNATINKVKEWFAANGYHQDIDIKRNAEFLNDKSKLLAALAQTTSDADFERILQ------AASSDRSASPASSAHEEEESEPDY---

Query:  ---DLDDPFLDSQP
           D++DPFLD+QP
Subjt:  ---DLDDPFLDSQP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGGGGATCCCTGGATGCCAAAGATTTCTACTTTTAAGCCTATGAGTTTAGATGGTAATATTTCTCAGGAGAAAGTAGCAGATTTCCTTTCTCCTTCAGGGGAGTG
GGATCTGAGAAAGTTGGGGAGTTCAGTGATGAGAGAAGACTACGAAATCATTAGGAGAATTCCAATTAATCAGAGGCTTAAAGATAAATTAGTTTGGCATTATGATAAAG
CAGGGAATTATTCGGTCATCTATGAACCAATCATAGAGCCTGAATTCCAAGGTCTCAACCTAGAAGAGACCATTTCAAATATGTATCCTTCAGGCTTCAATTTCATGCCT
GAGGATCTTAACAAAACCAGAACTTTCTATGAGTTCATCCTCGTTGACACCAAGTCAGCTGAGATCACTCATATTCCCGATAAAAATGATCCTTCGAAGATCGCTTATTC
AAAATTCAAAATTTTCAAGGCCCTAAATCCAACACATTGGAATCAAGGTTTATATACAGACAAATCCTTTTCAAAACCATTTGCTCCACAAACATATTCATATCGGGACT
ACGTGAGAGCCTGCAATCAACCACAATACAAAACCATCACCAAAATCCTAAAGATCAAATGGTGGGATAAGTTCAATTTCCAGAACGCAACCATTAACAAAGTCAAAGAA
TGGTTTGCAGCCAATGGATATCATCAAGACATTGATATTAAGAGAAACGCAGAGTTTCTCAATGACAAATCAAAGCTTCTGGCAGCTCTCGCACAGACAACATCTGATGC
AGACTTCGAGAGAATCCTTCAAGCAGCATCTTCAGACAGAAGCGCCTCACCAGCTTCTTCAGCACATGAAGAAGAAGAAAGCGAGCCAGATTACGATCTGGACGACCCTT
TCCTCGACTCACAGCCTATTTTGGTGTTCCCGGCAGTAAGTCTCGTCGAGTTTAGAGCAGTGAGTCCGTTGTCTAATTCTATCTTCGACGAAGAGATCGTCAGAAGTTAT
TTACACTCATTTACTCCGAAGGACTGTTGCGAAGGACTGTTGCGGTTTGTGGTCCCGGTCGTAAGTCGCCAAGAGTCGCGCAGTGAATCCGTTGGTCAGCATACCTTGCC
TTCTTGCCAGAAGAGAGCTGTTCAAGTCGCTCTTCGACCAATGTTTAGAACGGGTCTTGACACCCCTGTTCTTGCAATCCTGAGAGATAGACGTGACAAAGACTTCTCTA
ACTCTCTCCTAGGGATCTTAGAGTCTAATCTTGCCGATGGCCCTGTTGTTCTTTCATTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTGGGGATCCCTGGATGCCAAAGATTTCTACTTTTAAGCCTATGAGTTTAGATGGTAATATTTCTCAGGAGAAAGTAGCAGATTTCCTTTCTCCTTCAGGGGAGTG
GGATCTGAGAAAGTTGGGGAGTTCAGTGATGAGAGAAGACTACGAAATCATTAGGAGAATTCCAATTAATCAGAGGCTTAAAGATAAATTAGTTTGGCATTATGATAAAG
CAGGGAATTATTCGGTCATCTATGAACCAATCATAGAGCCTGAATTCCAAGGTCTCAACCTAGAAGAGACCATTTCAAATATGTATCCTTCAGGCTTCAATTTCATGCCT
GAGGATCTTAACAAAACCAGAACTTTCTATGAGTTCATCCTCGTTGACACCAAGTCAGCTGAGATCACTCATATTCCCGATAAAAATGATCCTTCGAAGATCGCTTATTC
AAAATTCAAAATTTTCAAGGCCCTAAATCCAACACATTGGAATCAAGGTTTATATACAGACAAATCCTTTTCAAAACCATTTGCTCCACAAACATATTCATATCGGGACT
ACGTGAGAGCCTGCAATCAACCACAATACAAAACCATCACCAAAATCCTAAAGATCAAATGGTGGGATAAGTTCAATTTCCAGAACGCAACCATTAACAAAGTCAAAGAA
TGGTTTGCAGCCAATGGATATCATCAAGACATTGATATTAAGAGAAACGCAGAGTTTCTCAATGACAAATCAAAGCTTCTGGCAGCTCTCGCACAGACAACATCTGATGC
AGACTTCGAGAGAATCCTTCAAGCAGCATCTTCAGACAGAAGCGCCTCACCAGCTTCTTCAGCACATGAAGAAGAAGAAAGCGAGCCAGATTACGATCTGGACGACCCTT
TCCTCGACTCACAGCCTATTTTGGTGTTCCCGGCAGTAAGTCTCGTCGAGTTTAGAGCAGTGAGTCCGTTGTCTAATTCTATCTTCGACGAAGAGATCGTCAGAAGTTAT
TTACACTCATTTACTCCGAAGGACTGTTGCGAAGGACTGTTGCGGTTTGTGGTCCCGGTCGTAAGTCGCCAAGAGTCGCGCAGTGAATCCGTTGGTCAGCATACCTTGCC
TTCTTGCCAGAAGAGAGCTGTTCAAGTCGCTCTTCGACCAATGTTTAGAACGGGTCTTGACACCCCTGTTCTTGCAATCCTGAGAGATAGACGTGACAAAGACTTCTCTA
ACTCTCTCCTAGGGATCTTAGAGTCTAATCTTGCCGATGGCCCTGTTGTTCTTTCATTTTAG
Protein sequenceShow/hide protein sequence
MFGDPWMPKISTFKPMSLDGNISQEKVADFLSPSGEWDLRKLGSSVMREDYEIIRRIPINQRLKDKLVWHYDKAGNYSVIYEPIIEPEFQGLNLEETISNMYPSGFNFMP
EDLNKTRTFYEFILVDTKSAEITHIPDKNDPSKIAYSKFKIFKALNPTHWNQGLYTDKSFSKPFAPQTYSYRDYVRACNQPQYKTITKILKIKWWDKFNFQNATINKVKE
WFAANGYHQDIDIKRNAEFLNDKSKLLAALAQTTSDADFERILQAASSDRSASPASSAHEEEESEPDYDLDDPFLDSQPILVFPAVSLVEFRAVSPLSNSIFDEEIVRSY
LHSFTPKDCCEGLLRFVVPVVSRQESRSESVGQHTLPSCQKRAVQVALRPMFRTGLDTPVLAILRDRRDKDFSNSLLGILESNLADGPVVLSF