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Lag0015935 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015935
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr12:29518431..29519006
RNA-Seq ExpressionLag0015935
SyntenyLag0015935
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]6.2e-2550.31Show/hide
Query:  AKETQHEDSQTPV-IANKMLRRMTESAQLEIATAENLMLDKFISSSQQPN-ETSSPDAMSVMMTDVGTSEERMAEVEKKINMLLKMVEEKYQEIASLRNQ
        ++E Q  +   P  +A  +  ++++  +  I   EN  +D+  S S++ N E   P+ MSVM+TDV TSE+RMAE+EKK+NML+K VEE+  EIA L+N 
Subjt:  AKETQHEDSQTPV-IANKMLRRMTESAQLEIATAENLMLDKFISSSQQPN-ETSSPDAMSVMMTDVGTSEERMAEVEKKINMLLKMVEEKYQEIASLRNQ

Query:  MESRDVAESSQTPAIKGKRK---IIAQDQSQHSTSIASLSVQQLQDMIMNSIRAQYGGP
        +ESRD AESS T  IK   K   I+ + Q Q+STSIASLSVQQLQ+MI NSI+ QYGGP
Subjt:  MESRDVAESSQTPAIKGKRK---IIAQDQSQHSTSIASLSVQQLQDMIMNSIRAQYGGP

KAA0050518.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.1e-2550.31Show/hide
Query:  AKETQHEDSQTPV-IANKMLRRMTESAQLEIATAENLMLDKFISSSQQPN-ETSSPDAMSVMMTDVGTSEERMAEVEKKINMLLKMVEEKYQEIASLRNQ
        ++E Q  +   P  +   +  ++++  +  I   EN  +D+  S S++ N E   P+ MSVM+TDV TSE+RMAE+EKK+NML+K VEEK  EIA L+N 
Subjt:  AKETQHEDSQTPV-IANKMLRRMTESAQLEIATAENLMLDKFISSSQQPN-ETSSPDAMSVMMTDVGTSEERMAEVEKKINMLLKMVEEKYQEIASLRNQ

Query:  MESRDVAESSQTPAIKGKRK---IIAQDQSQHSTSIASLSVQQLQDMIMNSIRAQYGGP
        +ESRD AESS T  IK   K   I+ + Q Q+STSIASLSVQQLQ+MI NSI+ QYGGP
Subjt:  MESRDVAESSQTPAIKGKRK---IIAQDQSQHSTSIASLSVQQLQDMIMNSIRAQYGGP

KAA0051994.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.1e-2449.69Show/hide
Query:  AKETQHEDSQTPV-IANKMLRRMTESAQLEIATAENLMLDKFISSSQQPNETS-SPDAMSVMMTDVGTSEERMAEVEKKINMLLKMVEEKYQEIASLRNQ
        +++ Q  +   P  +AN +  ++++  +  I   EN  +D+  S S++ NE +  P+ MSVM+TDV TSE+RMAE+EKK+NML+K VEE+  EIASL+N 
Subjt:  AKETQHEDSQTPV-IANKMLRRMTESAQLEIATAENLMLDKFISSSQQPNETS-SPDAMSVMMTDVGTSEERMAEVEKKINMLLKMVEEKYQEIASLRNQ

Query:  MESRDVAESSQTPAIKGKRK---IIAQDQSQHSTSIASLSVQQLQDMIMNSIRAQYGGP
        +ESRD  ESS T  IK   K   I+ + Q Q+STSIASLSVQQL +MI NSI+ QYGGP
Subjt:  MESRDVAESSQTPAIKGKRK---IIAQDQSQHSTSIASLSVQQLQDMIMNSIRAQYGGP

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]1.1e-2450Show/hide
Query:  QTPVIANKMLRRMTESAQLEIATAENLMLDKFISSSQQPNETSSPDAMSVMMTDVGTSEERMAEVEKKINMLLKMVEEKYQEIASLRNQMESRDVAESSQ
        Q   IA  +L+++ ES +  I   EN + + + S+S +  + + PD MSVMM DV   E  MAE+E+KIN+L+K+V+E+  EIA+L+ QM++R+ AESSQ
Subjt:  QTPVIANKMLRRMTESAQLEIATAENLMLDKFISSSQQPNETSSPDAMSVMMTDVGTSEERMAEVEKKINMLLKMVEEKYQEIASLRNQMESRDVAESSQ

Query:  TPAI----KGKRKIIAQDQSQHSTSIASLSVQQLQDMIMNSIRAQYGGPT
        TP +    KGK  +      Q STS+ASLSVQQLQDMI NSIRAQYGGP+
Subjt:  TPAI----KGKRKIIAQDQSQHSTSIASLSVQQLQDMIMNSIRAQYGGPT

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]1.1e-2450Show/hide
Query:  QTPVIANKMLRRMTESAQLEIATAENLMLDKFISSSQQPNETSSPDAMSVMMTDVGTSEERMAEVEKKINMLLKMVEEKYQEIASLRNQMESRDVAESSQ
        Q   IA  +L+++ ES +  I   EN + + + S+S +  + + PD MSVMM DV   E  MAE+E+KIN+L+K+V+E+  EIA+L+ QM++R+ AESSQ
Subjt:  QTPVIANKMLRRMTESAQLEIATAENLMLDKFISSSQQPNETSSPDAMSVMMTDVGTSEERMAEVEKKINMLLKMVEEKYQEIASLRNQMESRDVAESSQ

Query:  TPAI----KGKRKIIAQDQSQHSTSIASLSVQQLQDMIMNSIRAQYGGPT
        TP +    KGK  +      Q STS+ASLSVQQLQDMI NSIRAQYGGP+
Subjt:  TPAI----KGKRKIIAQDQSQHSTSIASLSVQQLQDMIMNSIRAQYGGPT

TrEMBL top hitse value%identityAlignment
A0A5A7SY17 Ty3-gypsy retrotransposon protein6.7e-2549.69Show/hide
Query:  AKETQHEDSQTPV-IANKMLRRMTESAQLEIATAENLMLDKFISSSQQPN-ETSSPDAMSVMMTDVGTSEERMAEVEKKINMLLKMVEEKYQEIASLRNQ
        ++E Q  +   P  +A  +  ++++  +  I   EN  +D++ S S+  N E   P+ MSVM+TDV TSE+RMAE+EKK+NML+K VEE+  EIA L+N 
Subjt:  AKETQHEDSQTPV-IANKMLRRMTESAQLEIATAENLMLDKFISSSQQPN-ETSSPDAMSVMMTDVGTSEERMAEVEKKINMLLKMVEEKYQEIASLRNQ

Query:  MESRDVAESSQTPAIKGKRK---IIAQDQSQHSTSIASLSVQQLQDMIMNSIRAQYGGP
        +ESRD AESS T  +K   K   I+ + Q Q+STSIASLSVQQLQ+MI NSI+ QYGGP
Subjt:  MESRDVAESSQTPAIKGKRK---IIAQDQSQHSTSIASLSVQQLQDMIMNSIRAQYGGP

A0A5A7TZU9 Ribonuclease H3.0e-2550.31Show/hide
Query:  AKETQHEDSQTPV-IANKMLRRMTESAQLEIATAENLMLDKFISSSQQPN-ETSSPDAMSVMMTDVGTSEERMAEVEKKINMLLKMVEEKYQEIASLRNQ
        ++E Q  +   P  +A  +  ++++  +  I   EN  +D+  S S++ N E   P+ MSVM+TDV TSE+RMAE+EKK+NML+K VEE+  EIA L+N 
Subjt:  AKETQHEDSQTPV-IANKMLRRMTESAQLEIATAENLMLDKFISSSQQPN-ETSSPDAMSVMMTDVGTSEERMAEVEKKINMLLKMVEEKYQEIASLRNQ

Query:  MESRDVAESSQTPAIKGKRK---IIAQDQSQHSTSIASLSVQQLQDMIMNSIRAQYGGP
        +ESRD AESS T  IK   K   I+ + Q Q+STSIASLSVQQLQ+MI NSI+ QYGGP
Subjt:  MESRDVAESSQTPAIKGKRK---IIAQDQSQHSTSIASLSVQQLQDMIMNSIRAQYGGP

A0A5A7U5H1 Ty3-gypsy retrotransposon protein3.9e-2550.31Show/hide
Query:  AKETQHEDSQTPV-IANKMLRRMTESAQLEIATAENLMLDKFISSSQQPN-ETSSPDAMSVMMTDVGTSEERMAEVEKKINMLLKMVEEKYQEIASLRNQ
        ++E Q  +   P  +   +  ++++  +  I   EN  +D+  S S++ N E   P+ MSVM+TDV TSE+RMAE+EKK+NML+K VEEK  EIA L+N 
Subjt:  AKETQHEDSQTPV-IANKMLRRMTESAQLEIATAENLMLDKFISSSQQPN-ETSSPDAMSVMMTDVGTSEERMAEVEKKINMLLKMVEEKYQEIASLRNQ

Query:  MESRDVAESSQTPAIKGKRK---IIAQDQSQHSTSIASLSVQQLQDMIMNSIRAQYGGP
        +ESRD AESS T  IK   K   I+ + Q Q+STSIASLSVQQLQ+MI NSI+ QYGGP
Subjt:  MESRDVAESSQTPAIKGKRK---IIAQDQSQHSTSIASLSVQQLQDMIMNSIRAQYGGP

A0A5A7U9H0 Ty3-gypsy retrotransposon protein5.1e-2549.69Show/hide
Query:  AKETQHEDSQTPV-IANKMLRRMTESAQLEIATAENLMLDKFISSSQQPNETS-SPDAMSVMMTDVGTSEERMAEVEKKINMLLKMVEEKYQEIASLRNQ
        +++ Q  +   P  +AN +  ++++  +  I   EN  +D+  S S++ NE +  P+ MSVM+TDV TSE+RMAE+EKK+NML+K VEE+  EIASL+N 
Subjt:  AKETQHEDSQTPV-IANKMLRRMTESAQLEIATAENLMLDKFISSSQQPNETS-SPDAMSVMMTDVGTSEERMAEVEKKINMLLKMVEEKYQEIASLRNQ

Query:  MESRDVAESSQTPAIKGKRK---IIAQDQSQHSTSIASLSVQQLQDMIMNSIRAQYGGP
        +ESRD  ESS T  IK   K   I+ + Q Q+STSIASLSVQQL +MI NSI+ QYGGP
Subjt:  MESRDVAESSQTPAIKGKRK---IIAQDQSQHSTSIASLSVQQLQDMIMNSIRAQYGGP

A0A5D3BY54 Ty3-gypsy retrotransposon protein5.1e-2549.37Show/hide
Query:  AKETQHEDSQTPVIANKMLRRMTESAQLEIATAENLMLDKFISSSQQPNETSSPDAMSVMMTDVGTSEERMAEVEKKINMLLKMVEEKYQEIASLRNQME
        +K    E  Q   +A  +L+++ ES +  I   EN + D   SSS +  + + PD MSVMM D+ T E  MAE+E+KIN L+K VEE+  EI +LR QM 
Subjt:  AKETQHEDSQTPVIANKMLRRMTESAQLEIATAENLMLDKFISSSQQPNETSSPDAMSVMMTDVGTSEERMAEVEKKINMLLKMVEEKYQEIASLRNQME

Query:  SRDVAESSQTPAI----KGKRKIIAQDQSQHSTSIASLSVQQLQDMIMNSIRAQYGGP
        +R+ AESSQTP +    KGK  +      Q S S+ASLSVQQLQDMI NSIRAQYGGP
Subjt:  SRDVAESSQTPAI----KGKRKIIAQDQSQHSTSIASLSVQQLQDMIMNSIRAQYGGP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCAGTGGGACAGTCTCTACCTCTCATCTCTTTTTCTCGCAAAGAAATCATGACTTCCGAAGAAGCTTCTTCAAAGATCGCTGCTTCAAGCAACTCTTATGTGGGGC
CAAGGAAACCCAACACGAAGACAGCCAAACTCCTGTCATTGCAAACAAGATGCTGAGACGCATGACAGAATCTGCTCAACTTGAAATCGCCACTGCAGAAAATCTGATGC
TTGACAAATTCATCTCTTCTTCGCAGCAACCAAACGAAACATCCAGTCCTGATGCGATGTCTGTTATGATGACTGATGTTGGAACTAGTGAAGAACGAATGGCTGAAGTT
GAGAAGAAAATCAACATGTTACTGAAGATGGTCGAAGAGAAATACCAAGAAATCGCCTCTCTCAGGAACCAGATGGAAAGTCGGGATGTTGCTGAATCGAGTCAGACCCC
TGCCATCAAAGGCAAGAGAAAGATTATTGCACAAGATCAATCACAACATTCCACTTCTATTGCTTCACTTTCCGTCCAGCAGCTCCAGGATATGATCATGAATTCCATTA
GAGCTCAATATGGTGGACCGACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCCAGTGGGACAGTCTCTACCTCTCATCTCTTTTTCTCGCAAAGAAATCATGACTTCCGAAGAAGCTTCTTCAAAGATCGCTGCTTCAAGCAACTCTTATGTGGGGC
CAAGGAAACCCAACACGAAGACAGCCAAACTCCTGTCATTGCAAACAAGATGCTGAGACGCATGACAGAATCTGCTCAACTTGAAATCGCCACTGCAGAAAATCTGATGC
TTGACAAATTCATCTCTTCTTCGCAGCAACCAAACGAAACATCCAGTCCTGATGCGATGTCTGTTATGATGACTGATGTTGGAACTAGTGAAGAACGAATGGCTGAAGTT
GAGAAGAAAATCAACATGTTACTGAAGATGGTCGAAGAGAAATACCAAGAAATCGCCTCTCTCAGGAACCAGATGGAAAGTCGGGATGTTGCTGAATCGAGTCAGACCCC
TGCCATCAAAGGCAAGAGAAAGATTATTGCACAAGATCAATCACAACATTCCACTTCTATTGCTTCACTTTCCGTCCAGCAGCTCCAGGATATGATCATGAATTCCATTA
GAGCTCAATATGGTGGACCGACTTAG
Protein sequenceShow/hide protein sequence
MPSGTVSTSHLFFSQRNHDFRRSFFKDRCFKQLLCGAKETQHEDSQTPVIANKMLRRMTESAQLEIATAENLMLDKFISSSQQPNETSSPDAMSVMMTDVGTSEERMAEV
EKKINMLLKMVEEKYQEIASLRNQMESRDVAESSQTPAIKGKRKIIAQDQSQHSTSIASLSVQQLQDMIMNSIRAQYGGPT