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Lag0015936 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015936
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr12:29520246..29520758
RNA-Seq ExpressionLag0015936
SyntenyLag0015936
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032810.1 uncharacterized protein E6C27_scaffold708G00640 [Cucumis melo var. makuwa]5.3e-2847.93Show/hide
Query:  FRNYRRKNMSQKQRRKIKSLRKPKLVVEENQDFVLTRHLVTLKDFFPKNFLNDDHEDIPKIVACHAVNAFEEGDSSSSPSQVMTRPE---DSPSFTIDDL
        +RNYRR N +QK ++K K  RK KLV EE++DF  T+ LVTL DFFP  FL D  ++ P ++ACHA+NA EE    S P + +   E   D   F +DDL
Subjt:  FRNYRRKNMSQKQRRKIKSLRKPKLVVEENQDFVLTRHLVTLKDFFPKNFLNDDHEDIPKIVACHAVNAFEEGDSSSSPSQVMTRPE---DSPSFTIDDL

Query:  LSFPQETKDTIVETFKSS--NVSDVPDLQEHKCASCYMSISFTDEDLMMGLKPHYRPLFVSGYIREQKV
        LS PQETK  ++    +S  + S  P         C MSI F+DEDL++G K H RPL+VSGY+REQ+V
Subjt:  LSFPQETKDTIVETFKSS--NVSDVPDLQEHKCASCYMSISFTDEDLMMGLKPHYRPLFVSGYIREQKV

KAA0035943.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.7e-2645.78Show/hide
Query:  FRNYRRKNMSQKQRRKIKSLRKPKLVVEENQDFVLTRHLVTLKDFFPKNFLNDDHEDIPKIVACHAVNAFEEGDSSSSPSQVMTRPEDSPSFTIDDLLSF
        +RNYRR N +QK ++  K  RK K + EE++DF  T+ LVTL DFFP  FL D  ++ P +VACHA+NA EE        +     +D   F +DDLLS 
Subjt:  FRNYRRKNMSQKQRRKIKSLRKPKLVVEENQDFVLTRHLVTLKDFFPKNFLNDDHEDIPKIVACHAVNAFEEGDSSSSPSQVMTRPEDSPSFTIDDLLSF

Query:  PQETKDTIVETFKSSNVSDV--PDLQEHKCASCYMSISFTDEDLMMGLKPHYRPLFVSGYIREQKV
        PQETK  ++    +S  S +  P         C MSI F+DEDL++G K H RPL+VSGY+REQ+V
Subjt:  PQETKDTIVETFKSSNVSDV--PDLQEHKCASCYMSISFTDEDLMMGLKPHYRPLFVSGYIREQKV

KAA0039557.1 uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa]1.1e-2544.58Show/hide
Query:  FRNYRRKNMSQKQRRKIKSLRKPKLVVEENQDFVLTRHLVTLKDFFPKNFLNDDHEDIPKIVACHAVNAFEEGDSSSSPSQVMTRPEDSPSFTIDDLLSF
        +RNYR+ N +QK ++K K  RK KL+ EE++DF  T+ LVTL DFFP  FL D  ++ P++V CHA+NA EE +      +     +D   F ++DLLS 
Subjt:  FRNYRRKNMSQKQRRKIKSLRKPKLVVEENQDFVLTRHLVTLKDFFPKNFLNDDHEDIPKIVACHAVNAFEEGDSSSSPSQVMTRPEDSPSFTIDDLLSF

Query:  PQETKDTIVETFKSSNV--SDVPDLQEHKCASCYMSISFTDEDLMMGLKPHYRPLFVSGYIREQKV
        PQETK  ++    +S    S  P         C MSI F+ EDL++G K H RPL+VSGY+REQ+V
Subjt:  PQETKDTIVETFKSSNV--SDVPDLQEHKCASCYMSISFTDEDLMMGLKPHYRPLFVSGYIREQKV

KAA0056780.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.8e-2645.18Show/hide
Query:  FRNYRRKNMSQKQRRKIKSLRKPKLVVEENQDFVLTRHLVTLKDFFPKNFLNDDHEDIPKIVACHAVNAFEEGDSSSSPSQVMTRPEDSPSFTIDDLLSF
        +RNYRR N +QK ++K K  +K KL+ EE++DF  T+ LVTL +FFP  FL D  ++ P++VACHA++A EE        +     +D   F +DDLLS 
Subjt:  FRNYRRKNMSQKQRRKIKSLRKPKLVVEENQDFVLTRHLVTLKDFFPKNFLNDDHEDIPKIVACHAVNAFEEGDSSSSPSQVMTRPEDSPSFTIDDLLSF

Query:  PQETKDTIVETFKSS--NVSDVPDLQEHKCASCYMSISFTDEDLMMGLKPHYRPLFVSGYIREQKV
        PQETK  ++    +S  + S  P         C MSI F+DEDL++G K H RPL+VSGY+REQ+V
Subjt:  PQETKDTIVETFKSS--NVSDVPDLQEHKCASCYMSISFTDEDLMMGLKPHYRPLFVSGYIREQKV

TYK15313.1 uncharacterized protein E5676_scaffold1706G00210 [Cucumis melo var. makuwa]8.5e-2646.34Show/hide
Query:  NYRRKNMSQKQRRKIKSLRKPKLVVEENQDFVLTRHLVTLKDFFPKNFLNDDHEDIPKIVACHAVNAFEEGDSSSSPSQVMTRPEDSPSFTIDDLLSFPQ
        NYRR N +QK ++K K  RK KL+ EE++DF+  + LVTL DFFP  FL D  ++ P +VACHA+NA EE        +     +D   F ++DLLS PQ
Subjt:  NYRRKNMSQKQRRKIKSLRKPKLVVEENQDFVLTRHLVTLKDFFPKNFLNDDHEDIPKIVACHAVNAFEEGDSSSSPSQVMTRPEDSPSFTIDDLLSFPQ

Query:  ETKDTIVETFKSSNVSDV--PDLQEHKCASCYMSISFTDEDLMMGLKPHYRPLFVSGYIREQKV
        ETK  ++  F +S  S +  P         C MSI F DEDL++G K H RPL+VSGY+REQ+V
Subjt:  ETKDTIVETFKSSNVSDV--PDLQEHKCASCYMSISFTDEDLMMGLKPHYRPLFVSGYIREQKV

TrEMBL top hitse value%identityAlignment
A0A5A7SZ85 Ty3-gypsy retrotransposon protein8.3e-2745.78Show/hide
Query:  FRNYRRKNMSQKQRRKIKSLRKPKLVVEENQDFVLTRHLVTLKDFFPKNFLNDDHEDIPKIVACHAVNAFEEGDSSSSPSQVMTRPEDSPSFTIDDLLSF
        +RNYRR N +QK ++  K  RK K + EE++DF  T+ LVTL DFFP  FL D  ++ P +VACHA+NA EE        +     +D   F +DDLLS 
Subjt:  FRNYRRKNMSQKQRRKIKSLRKPKLVVEENQDFVLTRHLVTLKDFFPKNFLNDDHEDIPKIVACHAVNAFEEGDSSSSPSQVMTRPEDSPSFTIDDLLSF

Query:  PQETKDTIVETFKSSNVSDV--PDLQEHKCASCYMSISFTDEDLMMGLKPHYRPLFVSGYIREQKV
        PQETK  ++    +S  S +  P         C MSI F+DEDL++G K H RPL+VSGY+REQ+V
Subjt:  PQETKDTIVETFKSSNVSDV--PDLQEHKCASCYMSISFTDEDLMMGLKPHYRPLFVSGYIREQKV

A0A5D3BE72 Ty3-gypsy retrotransposon protein1.8e-2645.18Show/hide
Query:  FRNYRRKNMSQKQRRKIKSLRKPKLVVEENQDFVLTRHLVTLKDFFPKNFLNDDHEDIPKIVACHAVNAFEEGDSSSSPSQVMTRPEDSPSFTIDDLLSF
        +RNYRR N +QK ++K K  +K KL+ EE++DF  T+ LVTL +FFP  FL D  ++ P++VACHA++A EE        +     +D   F +DDLLS 
Subjt:  FRNYRRKNMSQKQRRKIKSLRKPKLVVEENQDFVLTRHLVTLKDFFPKNFLNDDHEDIPKIVACHAVNAFEEGDSSSSPSQVMTRPEDSPSFTIDDLLSF

Query:  PQETKDTIVETFKSS--NVSDVPDLQEHKCASCYMSISFTDEDLMMGLKPHYRPLFVSGYIREQKV
        PQETK  ++    +S  + S  P         C MSI F+DEDL++G K H RPL+VSGY+REQ+V
Subjt:  PQETKDTIVETFKSS--NVSDVPDLQEHKCASCYMSISFTDEDLMMGLKPHYRPLFVSGYIREQKV

A0A5D3BSG5 Uncharacterized protein5.4e-2644.58Show/hide
Query:  FRNYRRKNMSQKQRRKIKSLRKPKLVVEENQDFVLTRHLVTLKDFFPKNFLNDDHEDIPKIVACHAVNAFEEGDSSSSPSQVMTRPEDSPSFTIDDLLSF
        +RNYR+ N +QK ++K K  RK KL+ EE++DF  T+ LVTL DFFP  FL D  ++ P++V CHA+NA EE +      +     +D   F ++DLLS 
Subjt:  FRNYRRKNMSQKQRRKIKSLRKPKLVVEENQDFVLTRHLVTLKDFFPKNFLNDDHEDIPKIVACHAVNAFEEGDSSSSPSQVMTRPEDSPSFTIDDLLSF

Query:  PQETKDTIVETFKSSNV--SDVPDLQEHKCASCYMSISFTDEDLMMGLKPHYRPLFVSGYIREQKV
        PQETK  ++    +S    S  P         C MSI F+ EDL++G K H RPL+VSGY+REQ+V
Subjt:  PQETKDTIVETFKSSNV--SDVPDLQEHKCASCYMSISFTDEDLMMGLKPHYRPLFVSGYIREQKV

A0A5D3CTU4 Uncharacterized protein4.1e-2646.34Show/hide
Query:  NYRRKNMSQKQRRKIKSLRKPKLVVEENQDFVLTRHLVTLKDFFPKNFLNDDHEDIPKIVACHAVNAFEEGDSSSSPSQVMTRPEDSPSFTIDDLLSFPQ
        NYRR N +QK ++K K  RK KL+ EE++DF+  + LVTL DFFP  FL D  ++ P +VACHA+NA EE        +     +D   F ++DLLS PQ
Subjt:  NYRRKNMSQKQRRKIKSLRKPKLVVEENQDFVLTRHLVTLKDFFPKNFLNDDHEDIPKIVACHAVNAFEEGDSSSSPSQVMTRPEDSPSFTIDDLLSFPQ

Query:  ETKDTIVETFKSSNVSDV--PDLQEHKCASCYMSISFTDEDLMMGLKPHYRPLFVSGYIREQKV
        ETK  ++  F +S  S +  P         C MSI F DEDL++G K H RPL+VSGY+REQ+V
Subjt:  ETKDTIVETFKSSNVSDV--PDLQEHKCASCYMSISFTDEDLMMGLKPHYRPLFVSGYIREQKV

A0A5D3E3J4 Uncharacterized protein2.6e-2847.93Show/hide
Query:  FRNYRRKNMSQKQRRKIKSLRKPKLVVEENQDFVLTRHLVTLKDFFPKNFLNDDHEDIPKIVACHAVNAFEEGDSSSSPSQVMTRPE---DSPSFTIDDL
        +RNYRR N +QK ++K K  RK KLV EE++DF  T+ LVTL DFFP  FL D  ++ P ++ACHA+NA EE    S P + +   E   D   F +DDL
Subjt:  FRNYRRKNMSQKQRRKIKSLRKPKLVVEENQDFVLTRHLVTLKDFFPKNFLNDDHEDIPKIVACHAVNAFEEGDSSSSPSQVMTRPE---DSPSFTIDDL

Query:  LSFPQETKDTIVETFKSS--NVSDVPDLQEHKCASCYMSISFTDEDLMMGLKPHYRPLFVSGYIREQKV
        LS PQETK  ++    +S  + S  P         C MSI F+DEDL++G K H RPL+VSGY+REQ+V
Subjt:  LSFPQETKDTIVETFKSS--NVSDVPDLQEHKCASCYMSISFTDEDLMMGLKPHYRPLFVSGYIREQKV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTCGAAACTACAGAAGAAAGAACATGTCACAAAAGCAAAGGAGAAAGATAAAAAGTTTGAGAAAGCCTAAACTAGTTGTCGAAGAGAATCAAGATTTTGTTCTAAC
TCGACATTTGGTAACCCTTAAAGATTTCTTCCCAAAGAACTTTCTTAATGATGATCATGAAGACATCCCTAAGATAGTCGCATGTCATGCTGTCAATGCATTCGAAGAAG
GCGATTCTTCCTCAAGTCCATCTCAGGTGATGACAAGGCCAGAAGATTCACCTTCATTTACAATAGATGATTTATTGTCATTTCCTCAAGAAACCAAAGATACTATTGTT
GAAACATTTAAAAGTTCTAACGTTTCAGACGTTCCAGACTTGCAAGAACACAAATGTGCCTCATGTTATATGTCCATTAGCTTTACAGATGAAGATTTGATGATGGGATT
GAAGCCTCATTATAGGCCTTTATTCGTCTCAGGATATATTCGAGAGCAAAAAGTTCGCCTAAGTCAACCATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTCGAAACTACAGAAGAAAGAACATGTCACAAAAGCAAAGGAGAAAGATAAAAAGTTTGAGAAAGCCTAAACTAGTTGTCGAAGAGAATCAAGATTTTGTTCTAAC
TCGACATTTGGTAACCCTTAAAGATTTCTTCCCAAAGAACTTTCTTAATGATGATCATGAAGACATCCCTAAGATAGTCGCATGTCATGCTGTCAATGCATTCGAAGAAG
GCGATTCTTCCTCAAGTCCATCTCAGGTGATGACAAGGCCAGAAGATTCACCTTCATTTACAATAGATGATTTATTGTCATTTCCTCAAGAAACCAAAGATACTATTGTT
GAAACATTTAAAAGTTCTAACGTTTCAGACGTTCCAGACTTGCAAGAACACAAATGTGCCTCATGTTATATGTCCATTAGCTTTACAGATGAAGATTTGATGATGGGATT
GAAGCCTCATTATAGGCCTTTATTCGTCTCAGGATATATTCGAGAGCAAAAAGTTCGCCTAAGTCAACCATGA
Protein sequenceShow/hide protein sequence
MFRNYRRKNMSQKQRRKIKSLRKPKLVVEENQDFVLTRHLVTLKDFFPKNFLNDDHEDIPKIVACHAVNAFEEGDSSSSPSQVMTRPEDSPSFTIDDLLSFPQETKDTIV
ETFKSSNVSDVPDLQEHKCASCYMSISFTDEDLMMGLKPHYRPLFVSGYIREQKVRLSQP