; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0015966 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015966
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr12:30363455..30364202
RNA-Seq ExpressionLag0015966
SyntenyLag0015966
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7805280.1 non-LTR retroelement reverse transcriptase-like [Senna tora]6.5e-0826.23Show/hide
Query:  WALKDRW---------VRDYLDTFQKASGRSFQSPVGLHHSQSVRAVVSWVPPAVNGLKLNIDGSCW------------------------------TAD
        W  K++W          R+Y++  ++A      S     H  ++   + W PP    +KLN+DGS W                               ++
Subjt:  WALKDRW---------VRDYLDTFQKASGRSFQSPVGLHHSQSVRAVVSWVPPAVNGLKLNIDGSCW------------------------------TAD

Query:  LAEGWAMLRGIQIARQMGFFFRFHVETDSLRLSRVLTDDVDDISEVGAIMEKIRGLLQQDSSCRVLFTPRQGNLVAHTMTSLA
        LAE WA+L G+++A  M    R HVE DSL +  ++ D VD    +G I++KIR    +D +  +    R+ N VA+ + + A
Subjt:  LAEGWAMLRGIQIARQMGFFFRFHVETDSLRLSRVLTDDVDDISEVGAIMEKIRGLLQQDSSCRVLFTPRQGNLVAHTMTSLA

KAF7834439.1 WEB family protein [Senna tora]3.2e-0730.15Show/hide
Query:  WVPPAVNGLKLNIDGSCWTAD------------------------------LAEGWAMLRGIQIARQMGFFFRFHVETDSLRLSRVLTDDVDDISEVGAI
        W+PP  N  K+N+DGSCW  D                              LAE W +  G+QIAR  G      +ETDSL   +++  +  +   + AI
Subjt:  WVPPAVNGLKLNIDGSCWTAD------------------------------LAEGWAMLRGIQIARQMGFFFRFHVETDSLRLSRVLTDDVDDISEVGAI

Query:  MEKIRGLLQQDSSCRVLFTPRQGNLVAHTMTSLAFL
         E I+ +L  + S  ++  PR  N VA TM     L
Subjt:  MEKIRGLLQQDSSCRVLFTPRQGNLVAHTMTSLAFL

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]1.7e-0830.22Show/hide
Query:  WVRDYLDTFQKASGRSFQSPVGLHHSQSVRAVVSWVPPAVNGLKLNIDGS-------------------------------CWTADLAEGWAMLRGIQIA
        W  +YL  +Q A   S  + V     +    V  W PPA   LK+N+D +                                   D  EG+A+  GI +A
Subjt:  WVRDYLDTFQKASGRSFQSPVGLHHSQSVRAVVSWVPPAVNGLKLNIDGS-------------------------------CWTADLAEGWAMLRGIQIA

Query:  RQMGFFFRFHVETDSLRLSRVLTDDVDDISEVGAIMEKIRGLLQQDSS-CRVLFTPRQGNLVAHTMTSLAFLYAN-YIWLED
         + G F RF +ETDSLR+  +LT D  D SEVG +   I+  L   +      FT R GN  AH +  LA    +  IW+E+
Subjt:  RQMGFFFRFHVETDSLRLSRVLTDDVDDISEVGAIMEKIRGLLQQDSS-CRVLFTPRQGNLVAHTMTSLAFLYAN-YIWLED

XP_030509082.1 uncharacterized protein LOC115723746 [Cannabis sativa]6.1e-0626.47Show/hide
Query:  RDYLDTFQKASGR---SFQSPVGLHHSQSVRAVVSWVPPAVNGLKLNIDGSC-------------------------------WTADLAEGWAMLRGIQI
        +DYLD +Q A  +     QS   L+       +++W PP V  LKLN D +                                  + +AEGW +L G++ 
Subjt:  RDYLDTFQKASGR---SFQSPVGLHHSQSVRAVVSWVPPAVNGLKLNIDGSC-------------------------------WTADLAEGWAMLRGIQI

Query:  ARQMGFFFRFHVETDSLRLSRVLTDDVDDISEVGAIMEKIRGLLQQDSSCRVLFTPRQGNLVAHTMTSLA
        +R  GF  + H+E D   L   L    +++S  G+I+  IR +L    +  +  T RQGN  AH +  ++
Subjt:  ARQMGFFFRFHVETDSLRLSRVLTDDVDDISEVGAIMEKIRGLLQQDSSCRVLFTPRQGNLVAHTMTSLA

XP_037497304.1 uncharacterized protein LOC105643257 [Jatropha curcas]2.1e-0629.34Show/hide
Query:  SDLNFDSLLWALKDRWVRDYLDTFQKASGRSFQSPVGLHHSQSVRA--VVSWVPPAVNGLKLNIDGSCWTADLAEGWAMLRGIQIARQMGFFF------R
        S  NF   L    DR + D    F  +  R + +      + SV +  V +W PP    +K N+D +     + EG +   G+ I  ++G F        
Subjt:  SDLNFDSLLWALKDRWVRDYLDTFQKASGRSFQSPVGLHHSQSVRA--VVSWVPPAVNGLKLNIDGSCWTADLAEGWAMLRGIQIARQMGFFF------R

Query:  FH---VETDSLRLSRVLTDDVDDISEVGAIMEKIRGLLQQDSSCRVLFTPRQGNLVAHTMTSLAFLY
        F    VETD LRL + +T   D  S+   ++E+I+ LL Q SS  +++  RQGN+ AH +  +  L+
Subjt:  FH---VETDSLRLSRVLTDDVDDISEVGAIMEKIRGLLQQDSSCRVLFTPRQGNLVAHTMTSLAFLY

TrEMBL top hitse value%identityAlignment
A0A6J1CIF1 uncharacterized protein LOC1110112371.1e-0525.41Show/hide
Query:  WVRDYLDTFQKASGRSFQSPVGLHHSQSVRAVVSWVPPAVNGLKLNIDGS-------------------------------CWTADLAEGWAMLRGIQIA
        W   Y+  F++A+   F   V      +  A V W+PP     K+N D S                                 + D+AE    + G+Q+A
Subjt:  WVRDYLDTFQKASGRSFQSPVGLHHSQSVRAVVSWVPPAVNGLKLNIDGS-------------------------------CWTADLAEGWAMLRGIQIA

Query:  RQMGFFFRFHVETDSLRLSRVLTDDVDDISEVGAIMEKIRGLLQQDSSCRVLFTPRQGNLVAHTMTSLAFLYANY-IWLED
         ++G      +ETDS R+  + +   +D+SE G I+ K +    Q       F  R+GN  AH +   A L   + IW+ED
Subjt:  RQMGFFFRFHVETDSLRLSRVLTDDVDDISEVGAIMEKIRGLLQQDSSCRVLFTPRQGNLVAHTMTSLAFLYANY-IWLED

A0A6J1DBJ7 uncharacterized protein LOC1110189738.3e-0930.22Show/hide
Query:  WVRDYLDTFQKASGRSFQSPVGLHHSQSVRAVVSWVPPAVNGLKLNIDGS-------------------------------CWTADLAEGWAMLRGIQIA
        W  +YL  +Q A   S  + V     +    V  W PPA   LK+N+D +                                   D  EG+A+  GI +A
Subjt:  WVRDYLDTFQKASGRSFQSPVGLHHSQSVRAVVSWVPPAVNGLKLNIDGS-------------------------------CWTADLAEGWAMLRGIQIA

Query:  RQMGFFFRFHVETDSLRLSRVLTDDVDDISEVGAIMEKIRGLLQQDSS-CRVLFTPRQGNLVAHTMTSLAFLYAN-YIWLED
         + G F RF +ETDSLR+  +LT D  D SEVG +   I+  L   +      FT R GN  AH +  LA    +  IW+E+
Subjt:  RQMGFFFRFHVETDSLRLSRVLTDDVDDISEVGAIMEKIRGLLQQDSS-CRVLFTPRQGNLVAHTMTSLAFLYAN-YIWLED

A0A7J6EW92 RNase H domain-containing protein1.5e-0526.47Show/hide
Query:  RDYLDTFQKASGR---SFQSPVGLHHSQSVRAVVSWVPPAVNGLKLNIDGSCWT-------------------------------ADLAEGWAMLRGIQI
        +DYLD +Q A  +     QS   L+       +++W PP V  LKLN D +  T                                 +AEGW +L G++ 
Subjt:  RDYLDTFQKASGR---SFQSPVGLHHSQSVRAVVSWVPPAVNGLKLNIDGSCWT-------------------------------ADLAEGWAMLRGIQI

Query:  ARQMGFFFRFHVETDSLRLSRVLTDDVDDISEVGAIMEKIRGLLQQDSSCRVLFTPRQGNLVAHTMTSLA
        +R  G   + H+E D   L   L    +++S  G I+  IR +L    +  +  T RQGN  AH +  ++
Subjt:  ARQMGFFFRFHVETDSLRLSRVLTDDVDDISEVGAIMEKIRGLLQQDSSCRVLFTPRQGNLVAHTMTSLA

A0A7J6I5F8 Uncharacterized protein1.9e-0526.47Show/hide
Query:  RDYLDTFQKASGR---SFQSPVGLHHSQSVRAVVSWVPPAVNGLKLNIDGSCWT-------------------------------ADLAEGWAMLRGIQI
        +DYLD +Q A  +     QS   L+       +++W PP V  LKLN D +  T                                 +AEGW +L G++ 
Subjt:  RDYLDTFQKASGR---SFQSPVGLHHSQSVRAVVSWVPPAVNGLKLNIDGSCWT-------------------------------ADLAEGWAMLRGIQI

Query:  ARQMGFFFRFHVETDSLRLSRVLTDDVDDISEVGAIMEKIRGLLQQDSSCRVLFTPRQGNLVAHTMTSLA
         R  G   + H+E D   L   L    +++S  G I+  IR +L    +  +  T RQGN  AH +  ++
Subjt:  ARQMGFFFRFHVETDSLRLSRVLTDDVDDISEVGAIMEKIRGLLQQDSSCRVLFTPRQGNLVAHTMTSLA

A0A7J7GYW5 Uncharacterized protein8.6e-0628Show/hide
Query:  VSWVPPAVNGLKLNIDGSCW-------------------------------TADLAEGWAMLRGIQIARQMGFFFRFHVETDSLRLSRVLTDDVDDISEV
        V W  PA   LK+N DG+ +                                +D AE +A  + +++AR +G F   H+E DSLR+ + L ++ + +SE 
Subjt:  VSWVPPAVNGLKLNIDGSCW-------------------------------TADLAEGWAMLRGIQIARQMGFFFRFHVETDSLRLSRVLTDDVDDISEV

Query:  GAIMEKIRGLLQQDSSCRVLFTPRQGNLVAHTMTSLAFLYANY--IWLED
        G I+ +  G  +  S   V    RQGN +AH +  +A  + NY  +W+ D
Subjt:  GAIMEKIRGLLQQDSSCRVLFTPRQGNLVAHTMTSLAFLYANY--IWLED

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTAAATCCATGTGGTGCTGCTCAAAGTTTGCATCTTTGTATCAGTCTTTATCTGATTTGAATTTTGATTCACTGCTGTGGGCTTTAAAGGATAGATGGGTGAGGGA
CTACTTAGATACGTTCCAGAAGGCGTCGGGGAGAAGCTTTCAGTCTCCGGTTGGTTTGCATCATTCGCAGTCGGTGAGGGCCGTGGTGTCGTGGGTTCCGCCAGCTGTGA
ATGGCCTGAAACTGAATATTGATGGGTCGTGTTGGACTGCGGACTTGGCCGAGGGATGGGCAATGTTGAGAGGTATACAAATTGCTCGCCAAATGGGTTTTTTTTTCAGG
TTTCATGTTGAGACCGACTCGTTGAGATTATCAAGAGTTTTGACAGACGATGTGGATGATATTTCGGAAGTAGGAGCAATTATGGAAAAGATTCGTGGCTTGCTCCAGCA
AGACTCTTCATGTAGGGTGTTATTCACACCTAGGCAAGGCAACTTGGTAGCTCATACCATGACTTCTTTAGCTTTTCTTTATGCTAATTATATTTGGCTTGAGGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTAAATCCATGTGGTGCTGCTCAAAGTTTGCATCTTTGTATCAGTCTTTATCTGATTTGAATTTTGATTCACTGCTGTGGGCTTTAAAGGATAGATGGGTGAGGGA
CTACTTAGATACGTTCCAGAAGGCGTCGGGGAGAAGCTTTCAGTCTCCGGTTGGTTTGCATCATTCGCAGTCGGTGAGGGCCGTGGTGTCGTGGGTTCCGCCAGCTGTGA
ATGGCCTGAAACTGAATATTGATGGGTCGTGTTGGACTGCGGACTTGGCCGAGGGATGGGCAATGTTGAGAGGTATACAAATTGCTCGCCAAATGGGTTTTTTTTTCAGG
TTTCATGTTGAGACCGACTCGTTGAGATTATCAAGAGTTTTGACAGACGATGTGGATGATATTTCGGAAGTAGGAGCAATTATGGAAAAGATTCGTGGCTTGCTCCAGCA
AGACTCTTCATGTAGGGTGTTATTCACACCTAGGCAAGGCAACTTGGTAGCTCATACCATGACTTCTTTAGCTTTTCTTTATGCTAATTATATTTGGCTTGAGGATTAA
Protein sequenceShow/hide protein sequence
MIKSMWCCSKFASLYQSLSDLNFDSLLWALKDRWVRDYLDTFQKASGRSFQSPVGLHHSQSVRAVVSWVPPAVNGLKLNIDGSCWTADLAEGWAMLRGIQIARQMGFFFR
FHVETDSLRLSRVLTDDVDDISEVGAIMEKIRGLLQQDSSCRVLFTPRQGNLVAHTMTSLAFLYANYIWLED