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Lag0015980 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015980
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr12:30684240..30685861
RNA-Seq ExpressionLag0015980
SyntenyLag0015980
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ONI01138.1 hypothetical protein PRUPE_6G123900 [Prunus persica]3.2e-1946.74Show/hide
Query:  MARFWWSAGKEDRGIHWVSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFVSRVLKGR-----------LGVGCGAVWNVVRW
        MARFWW+  K+ RGIHWV W+ +CKSK  GG+G++D E FNQA LAKQCWRI++ P S V+R+ + R           +G     +W  ++W
Subjt:  MARFWWSAGKEDRGIHWVSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFVSRVLKGR-----------LGVGCGAVWNVVRW

ONI09819.1 hypothetical protein PRUPE_4G011200 [Prunus persica]3.2e-1946.74Show/hide
Query:  MARFWWSAGKEDRGIHWVSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFVSRVLKGR-----------LGVGCGAVWNVVRW
        MARFWW+  K+ RGIHWV W+ +CKSK  GG+G++D E FNQA LAKQCWRI++ P S V+R+ + R           +G     +W  ++W
Subjt:  MARFWWSAGKEDRGIHWVSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFVSRVLKGR-----------LGVGCGAVWNVVRW

VVA32947.1 PREDICTED: retrotransposon [Prunus dulcis]3.2e-1946.74Show/hide
Query:  MARFWWSAGKEDRGIHWVSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFVSRVLKGR-----------LGVGCGAVWNVVRW
        MARFWW+  K+ RGIHWV W+ +CKSK  GG+G++D E FNQA LAKQCWRI++ P S V+R+ + R           +G     +W  ++W
Subjt:  MARFWWSAGKEDRGIHWVSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFVSRVLKGR-----------LGVGCGAVWNVVRW

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]7.6e-2144.14Show/hide
Query:  ARFWWSAGKEDRGIHWVSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFVSRVLKGRLGVGC-----------GAVWNVVRW----ISPKI
        ARFWW + KED+ IHWV+W ++   KC GGMG++D E+FN+A LAKQCWRI+ HP+S +SRVLKGR    C             +W  + W    +   +
Subjt:  ARFWWSAGKEDRGIHWVSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFVSRVLKGRLGVGC-----------GAVWNVVRW----ISPKI

Query:  GWYKVNVDATF
         W   N D+ F
Subjt:  GWYKVNVDATF

XP_022159001.1 uncharacterized protein LOC111025446 [Momordica charantia]9.3e-1945.28Show/hide
Query:  ARFWWSAGKEDRGIHWVSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFVSRVLKGRLGVGCGAVWNVVRWISPKIGWYKVNVDATFREDD
        ARFWW +G ED+ IHW+ W T+ K K  GGMG++D E+FN+A LAKQ WRI+ +P S +++VLKGR    C  +   +R  SP   W  +   +   +D 
Subjt:  ARFWWSAGKEDRGIHWVSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFVSRVLKGRLGVGCGAVWNVVRWISPKIGWYKVNVDATFREDD

Query:  LRARSG
        LR R G
Subjt:  LRARSG

TrEMBL top hitse value%identityAlignment
A0A251NPF0 Reverse transcriptase domain-containing protein1.6e-1946.74Show/hide
Query:  MARFWWSAGKEDRGIHWVSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFVSRVLKGR-----------LGVGCGAVWNVVRW
        MARFWW+  K+ RGIHWV W+ +CKSK  GG+G++D E FNQA LAKQCWRI++ P S V+R+ + R           +G     +W  ++W
Subjt:  MARFWWSAGKEDRGIHWVSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFVSRVLKGR-----------LGVGCGAVWNVVRW

A0A5E4FZN9 PREDICTED: retrotransposon1.6e-1946.74Show/hide
Query:  MARFWWSAGKEDRGIHWVSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFVSRVLKGR-----------LGVGCGAVWNVVRW
        MARFWW+  K+ RGIHWV W+ +CKSK  GG+G++D E FNQA LAKQCWRI++ P S V+R+ + R           +G     +W  ++W
Subjt:  MARFWWSAGKEDRGIHWVSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFVSRVLKGR-----------LGVGCGAVWNVVRW

A0A6J1DAR4 uncharacterized protein LOC1110189543.7e-2144.14Show/hide
Query:  ARFWWSAGKEDRGIHWVSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFVSRVLKGRLGVGC-----------GAVWNVVRW----ISPKI
        ARFWW + KED+ IHWV+W ++   KC GGMG++D E+FN+A LAKQCWRI+ HP+S +SRVLKGR    C             +W  + W    +   +
Subjt:  ARFWWSAGKEDRGIHWVSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFVSRVLKGRLGVGC-----------GAVWNVVRW----ISPKI

Query:  GWYKVNVDATF
         W   N D+ F
Subjt:  GWYKVNVDATF

M5W5F3 Reverse transcriptase domain-containing protein (Fragment)1.6e-1946.74Show/hide
Query:  MARFWWSAGKEDRGIHWVSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFVSRVLKGR-----------LGVGCGAVWNVVRW
        MARFWW+  K+ RGIHWV W+ +CKSK  GG+G++D E FNQA LAKQCWRI++ P S V+R+ + R           +G     +W  ++W
Subjt:  MARFWWSAGKEDRGIHWVSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFVSRVLKGR-----------LGVGCGAVWNVVRW

M5WJW2 Reverse transcriptase domain-containing protein1.6e-1946.74Show/hide
Query:  MARFWWSAGKEDRGIHWVSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFVSRVLKGR-----------LGVGCGAVWNVVRW
        MARFWW+  K+ RGIHWV W+ +CKSK  GG+G++D E FNQA LAKQCWRI++ P S V+R+ + R           +G     +W  ++W
Subjt:  MARFWWSAGKEDRGIHWVSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFVSRVLKGR-----------LGVGCGAVWNVVRW

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657504.0e-0425.96Show/hide
Query:  GIHWVSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFVSRVLKGRLGVGC--GAVWNVVRWISPKIGWYKVNVDATFREDDLRARSGIIVR
        G   + W T+     + G  ++   IF +    +   + ++  +  V R   G + VG     V  ++ W+SP +GW KVN D   R +   A +G ++R
Subjt:  GIHWVSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFVSRVLKGRLGVGC--GAVWNVVRWISPKIGWYKVNVDATFREDDLRARSGIIVR

Query:  DSDG
        D  G
Subjt:  DSDG

P93295 Uncharacterized mitochondrial protein AtMg003102.7e-1350Show/hide
Query:  MARFWWSAGKEDRGIHWVSWKTVCKSK-CYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFVSRVLKGR
        M  FWWS+ +  R I WV+W+ +CKSK   GG+G++D   FNQA LAKQ +RII  P + +SR+L+ R
Subjt:  MARFWWSAGKEDRGIHWVSWKTVCKSK-CYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFVSRVLKGR

Arabidopsis top hitse value%identityAlignment
AT1G27870.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.1e-0441.46Show/hide
Query:  RWISPKIGWYKVNVDATFREDDLRARSGIIVRDSDGHVMLS
        RW  P+ GW K N D +F   D+++++G +VRDS+G  +L+
Subjt:  RWISPKIGWYKVNVDATFREDDLRARSGIIVRDSDGHVMLS

AT4G29090.1 Ribonuclease H-like superfamily protein7.4e-1443.28Show/hide
Query:  MARFWWSAGKEDRGIHWVSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFVSRVLKGR
        +A FWW   +E +G+HW +W  +   K  GG+G+KD E FN A L KQ WR++  P S +++V K R
Subjt:  MARFWWSAGKEDRGIHWVSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFVSRVLKGR

AT5G42905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.8e-0426.21Show/hide
Query:  VSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFVSRVLKGRLG---VGC--GAVWNVVRWISPKIGWYKVNVDATFREDDLRARSGIIVRD
        + W T+     + G  ++   IF +     +C   ++    +V  V +  LG   VG     V  ++ W+ P +GW KVN D   R +   A +G ++RD
Subjt:  VSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFVSRVLKGRLG---VGC--GAVWNVVRWISPKIGWYKVNVDATFREDDLRARSGIIVRD

Query:  SDG
         +G
Subjt:  SDG

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.9e-1450Show/hide
Query:  MARFWWSAGKEDRGIHWVSWKTVCKSK-CYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFVSRVLKGR
        M  FWWS+ +  R I WV+W+ +CKSK   GG+G++D   FNQA LAKQ +RII  P + +SR+L+ R
Subjt:  MARFWWSAGKEDRGIHWVSWKTVCKSK-CYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFVSRVLKGR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCGATTTTGGTGGAGTGCGGGAAAGGAGGATCGGGGGATTCATTGGGTGAGTTGGAAGACCGTATGTAAGTCAAAATGCTATGGTGGCATGGGCTATAAGGATTT
TGAGATCTTTAATCAGGCTTTCTTGGCAAAGCAGTGCTGGAGGATTATACAACACCCATCCTCGTTCGTCTCACGTGTTCTAAAGGGCAGACTTGGTGTGGGTTGTGGGG
CTGTTTGGAATGTTGTAAGGTGGATTTCCCCAAAGATTGGCTGGTATAAAGTAAATGTAGATGCAACGTTTCGAGAGGACGATCTTCGAGCGAGATCGGGAATAATTGTT
AGGGATTCCGATGGGCATGTTATGCTCTCTGCAATAGTGGTGCATGGCCATATTAGGAGCTCAAATATGGTTGAAAGAATGGATGCAATTGATGGCTTGCGGATTGTAGT
GGATATGAGGTTGCTGTCGTTGGTGCCTGAGACAGATTCCAACCGTATAGTGTCCCTGATTCAATGTGAGCAGAAGGTGATGGTCATATTTGACGTGGGAAGGATGGTGA
CTGGGTTACGTGGGGAAGTGTCTGGTCCTTCTCTGTGTCGGTTGCAAATTCATTCGAAAGGAGGGAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTCGATTTTGGTGGAGTGCGGGAAAGGAGGATCGGGGGATTCATTGGGTGAGTTGGAAGACCGTATGTAAGTCAAAATGCTATGGTGGCATGGGCTATAAGGATTT
TGAGATCTTTAATCAGGCTTTCTTGGCAAAGCAGTGCTGGAGGATTATACAACACCCATCCTCGTTCGTCTCACGTGTTCTAAAGGGCAGACTTGGTGTGGGTTGTGGGG
CTGTTTGGAATGTTGTAAGGTGGATTTCCCCAAAGATTGGCTGGTATAAAGTAAATGTAGATGCAACGTTTCGAGAGGACGATCTTCGAGCGAGATCGGGAATAATTGTT
AGGGATTCCGATGGGCATGTTATGCTCTCTGCAATAGTGGTGCATGGCCATATTAGGAGCTCAAATATGGTTGAAAGAATGGATGCAATTGATGGCTTGCGGATTGTAGT
GGATATGAGGTTGCTGTCGTTGGTGCCTGAGACAGATTCCAACCGTATAGTGTCCCTGATTCAATGTGAGCAGAAGGTGATGGTCATATTTGACGTGGGAAGGATGGTGA
CTGGGTTACGTGGGGAAGTGTCTGGTCCTTCTCTGTGTCGGTTGCAAATTCATTCGAAAGGAGGGAAATAG
Protein sequenceShow/hide protein sequence
MARFWWSAGKEDRGIHWVSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFVSRVLKGRLGVGCGAVWNVVRWISPKIGWYKVNVDATFREDDLRARSGIIV
RDSDGHVMLSAIVVHGHIRSSNMVERMDAIDGLRIVVDMRLLSLVPETDSNRIVSLIQCEQKVMVIFDVGRMVTGLRGEVSGPSLCRLQIHSKGGK