; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0015994 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015994
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr12:30988143..30990023
RNA-Seq ExpressionLag0015994
SyntenyLag0015994
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032121.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.5e-0966.07Show/hide
Query:  MNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
        M  L+ K F E N D K+HS +PSRMKRK SV INTEGSL VKP  II TNP NEG
Subjt:  MNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
KAA0040811.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.5e-0966.07Show/hide
Query:  MNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
        M +L++K F E N D K+HS +PSRMKRK SV INTEGSL VKP  II TNP NEG
Subjt:  MNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.5e-0966.07Show/hide
Query:  MNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
        M +L+ K F E N D K+HS +PSRMKRK SV INTEGSL VKP  II TNP NEG
Subjt:  MNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
KAA0061331.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.4e-0966.07Show/hide
Query:  MNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
        M +L+ K F E N D K+HS +PSRMKRK SV INTEGSL VKP  II TNP NEG
Subjt:  MNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
KAA0063700.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.6e-0964.29Show/hide
Query:  MNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
        M +L+ KLF E N D  +HS +PSRMKRK S+ INTEGSL VKP  II TNP NEG
Subjt:  MNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
TrEMBL top hitse value%identityAlignment
A0A5A7TGM1 Retrotransposon gag protein2.2e-0966.07Show/hide
Query:  MNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
        M +L++K F E N D K+HS +PSRMKRK SV INTEGSL VKP  II TNP NEG
Subjt:  MNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
A0A5A7V6H5 Ty3-gypsy retrotransposon protein1.7e-0966.07Show/hide
Query:  MNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
        M +L+ K F E N D K+HS +PSRMKRK SV INTEGSL VKP  II TNP NEG
Subjt:  MNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
A0A5A7V935 Ty3-gypsy retrotransposon protein1.3e-0964.29Show/hide
Query:  MNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
        M +L+ KLF E N D  +HS +PSRMKRK S+ INTEGSL VKP  II TNP NEG
Subjt:  MNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
A0A5A7VRG7 Retrotransposon gag protein2.2e-0966.07Show/hide
Query:  MNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
        M +L+ K F E N D K+HS +PSRMKRK SV INTEGSL VKP  II TNP NEG
Subjt:  MNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
A0A5D3BBF9 Gag protease polyprotein2.2e-0966.07Show/hide
Query:  MNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
        M +L+ K F E N D K+HS +PSRMKRK SV INTEGSL VKP  II TNP NEG
Subjt:  MNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGA
AGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCTTGACCAATCCTGCAAATGAAGGATTGATCAAGACCATGACAAAGATAAGAGCTTTTAAATGTAAAAGCTCCTTAT
CGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAATGTTCCCACGTTGCGTTGTTGTGTTGCTTCCTTCTCCAAGTTCAAAGGTTCTAACGTTGCGG
TGCTTCTTCATCAAGTTCGAAGTTCCTTATCTCCAATTTCGAAGGATCTCGCACATTTCGCTGCAGTTTCTTCTCTCCAAGTTTGAAGGTTCACGCACTTCGCTGCAGTC
CCTTCTCTCAAGTTTGAAGGTTTTCACGCTGCTTCGCTGTAGTTCCTTCTCCAAGTTCGAAGGTTCTCACGTTGCTTCGCTGCAGTTCTTTCCTCCAAGTTCAAAGGGGT
TCTCATGCAACGCCTTCCTCCAAGTTCGAAGGATCTCACACATTTCGTTGCAGTTCCTTCTCTCAGAGTTCAAAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGTTGC
TTTGTTACACTTCCTTCTTTAAGTTCGAAGGTTCCCACGTTGCGCTGTTGTGTTGCTTCATTCTCCAAGTTCAAAGGTTCTAACATTGCGGTGCTTCCTTCATCAAGTTC
GAAGTTCCTTATCTCCAATTTCGAAGGATCTCGCACATTTCGCTGCATTCCTTCTCCAAGTTCGAAGGTTCTCACGTTGCTTCGCTGCAGTTCTTTCCTCCAAGTTCAAA
GGGGTTCTCATGCAACGCCTTCCTCCAAGTTCGAAGGATCTCACACATTTCGTTGCAGTTCCTTCTCTCAGAGTTCAAAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCAC
GTTGCTTTGTTGCAGTTTCCTTCCTCCAAGTCCGAAGGCTCCCCCAAGTCGAGTCGAAGACTCACACGTTGCTTCGCTGTAGTTTCCTTCCTCCAAGTCCGAAGGCTCCC
CCAAGTCGAGTCGAAGGCTCACACGTTGCTTCGCTGTAGTTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTTGCATCGTTGCAGTCCCTTCTCTCAAGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGA
AGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCTTGACCAATCCTGCAAATGAAGGATTGATCAAGACCATGACAAAGATAAGAGCTTTTAAATGTAAAAGCTCCTTAT
CGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAATGTTCCCACGTTGCGTTGTTGTGTTGCTTCCTTCTCCAAGTTCAAAGGTTCTAACGTTGCGG
TGCTTCTTCATCAAGTTCGAAGTTCCTTATCTCCAATTTCGAAGGATCTCGCACATTTCGCTGCAGTTTCTTCTCTCCAAGTTTGAAGGTTCACGCACTTCGCTGCAGTC
CCTTCTCTCAAGTTTGAAGGTTTTCACGCTGCTTCGCTGTAGTTCCTTCTCCAAGTTCGAAGGTTCTCACGTTGCTTCGCTGCAGTTCTTTCCTCCAAGTTCAAAGGGGT
TCTCATGCAACGCCTTCCTCCAAGTTCGAAGGATCTCACACATTTCGTTGCAGTTCCTTCTCTCAGAGTTCAAAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGTTGC
TTTGTTACACTTCCTTCTTTAAGTTCGAAGGTTCCCACGTTGCGCTGTTGTGTTGCTTCATTCTCCAAGTTCAAAGGTTCTAACATTGCGGTGCTTCCTTCATCAAGTTC
GAAGTTCCTTATCTCCAATTTCGAAGGATCTCGCACATTTCGCTGCATTCCTTCTCCAAGTTCGAAGGTTCTCACGTTGCTTCGCTGCAGTTCTTTCCTCCAAGTTCAAA
GGGGTTCTCATGCAACGCCTTCCTCCAAGTTCGAAGGATCTCACACATTTCGTTGCAGTTCCTTCTCTCAGAGTTCAAAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCAC
GTTGCTTTGTTGCAGTTTCCTTCCTCCAAGTCCGAAGGCTCCCCCAAGTCGAGTCGAAGACTCACACGTTGCTTCGCTGTAGTTTCCTTCCTCCAAGTCCGAAGGCTCCC
CCAAGTCGAGTCGAAGGCTCACACGTTGCTTCGCTGTAGTTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTTGCATCGTTGCAGTCCCTTCTCTCAAGTTTGA
Protein sequenceShow/hide protein sequence
MNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEGLIKTMTKIRAFKCKSSLSQEPKLHDAPSPHELKMFPRCVVVLLPSPSSKVLTLR
CFFIKFEVPYLQFRRISHISLQFLLSKFEGSRTSLQSLLSSLKVFTLLRCSSFSKFEGSHVASLQFFPPSSKGFSCNAFLQVRRISHISLQFLLSEFKVPSLQVRRFSRC
FVTLPSLSSKVPTLRCCVASFSKFKGSNIAVLPSSSSKFLISNFEGSRTFRCIPSPSSKVLTLLRCSSFLQVQRGSHATPSSKFEGSHTFRCSSFSQSSKFLLSKFEGSH
VALLQFPSSKSEGSPKSSRRLTRCFAVVSFLQVRRLPQVESKAHTLLRCSFLPPSSKVLTLHRCSPFSQV