; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0015996 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0015996
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRT_RNaseH_2 domain-containing protein
Genome locationchr12:31001289..31002563
RNA-Seq ExpressionLag0015996
SyntenyLag0015996
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8661093.1 hypothetical protein F3Y22_tig00116939pilonHSYRG00213 [Hibiscus syriacus]4.8e-1531.52Show/hide
Query:  EDITEEPKPVNSQVVREFYANIDEEEGFQVIIHGVVVDWSPEAINSLYNLQDFL--HAGYNEMA---------------------------------VAP
        +     P  VN+ +V+EFYANI +   + + + G  + ++  AIN  ++LQD +  HA + E A                                 + P
Subjt:  EDITEEPKPVNSQVVREFYANIDEEEGFQVIIHGVVVDWSPEAINSLYNLQDFL--HAGYNEMA---------------------------------VAP

Query:  SNEQLNAAVRKRLLPTTHDSTVSRERVLLAFEILRSLSIDVGKIIAGEIFGCWRKKVGKLFFPNTISMLCKRAKVPESAEDVIL
          +  N  ++ +L+PT+H++TVS  R+LL   I+ S  IDVG II  ++  C  KK   L FPN I+ LC++ KV E+A D IL
Subjt:  SNEQLNAAVRKRLLPTTHDSTVSRERVLLAFEILRSLSIDVGKIIAGEIFGCWRKKVGKLFFPNTISMLCKRAKVPESAEDVIL

KAE8680640.1 hypothetical protein F3Y22_tig00111372pilonHSYRG00020 [Hibiscus syriacus]2.2e-1532.6Show/hide
Query:  TEEPKPVNSQVVREFYANIDEEEGFQVIIHGVVVDWSPEAINSLYNLQDFL--HAGYNEMA---------------------------------VAPSNE
        T  P  VN+ VV+EFYANI +     + + G  + ++P AI   ++LQD +  HA + E A                                 + P  +
Subjt:  TEEPKPVNSQVVREFYANIDEEEGFQVIIHGVVVDWSPEAINSLYNLQDFL--HAGYNEMA---------------------------------VAPSNE

Query:  QLNAAVRKRLLPTTHDSTVSRERVLLAFEILRSLSIDVGKIIAGEIFGCWRKKVGKLFFPNTISMLCKRAKVPESAEDVIL
          N  ++ +L+PT++++TVS  R+LL   I  S  IDVG+II  ++  C  KK   L FPN I+ LC++ KV E+A D IL
Subjt:  QLNAAVRKRLLPTTHDSTVSRERVLLAFEILRSLSIDVGKIIAGEIFGCWRKKVGKLFFPNTISMLCKRAKVPESAEDVIL

KAE8712804.1 hypothetical protein F3Y22_tig00110223pilonHSYRG00028 [Hibiscus syriacus]1.3e-1533.94Show/hide
Query:  SEVLQKVI----EDITEEPKPVNSQVVREFYANIDEEEGFQVIIHGVVVDWSPEAINSLYNL----QDFLHAGYNEMAVAPSNEQLNAAVRKRLLPTTHD
        SEVL  V     +   + P  VN+ +V+EFY+NI E     +++HG+ + ++P AIN  + L    Q       +   + P  +  N  ++ +LLPT+H+
Subjt:  SEVLQKVI----EDITEEPKPVNSQVVREFYANIDEEEGFQVIIHGVVVDWSPEAINSLYNL----QDFLHAGYNEMAVAPSNEQLNAAVRKRLLPTTHD

Query:  STVSRERVLLAFEILRSLSIDVGKIIAGEIFGCWRKKVGKLFFPNTISMLCKRAKVPESAEDVIL
        +TVS +R++L   I+  L+ID+GKII  +   C ++    L FPN I+ L ++ KV E   D IL
Subjt:  STVSRERVLLAFEILRSLSIDVGKIIAGEIFGCWRKKVGKLFFPNTISMLCKRAKVPESAEDVIL

KAE8718449.1 hypothetical protein F3Y22_tig00110013pilonHSYRG00240 [Hibiscus syriacus]2.4e-1431.46Show/hide
Query:  PKPVNSQVVREFYANIDEEEGFQVIIHGVVVDWSPEAINSLYNLQDFL--HAGYNEMA---------------------------------VAPSNEQLN
        P  VN+ +V+EFYANI +     + + G  + ++  AIN  ++LQ+ +  HA + E A                                 + P  +  N
Subjt:  PKPVNSQVVREFYANIDEEEGFQVIIHGVVVDWSPEAINSLYNLQDFL--HAGYNEMA---------------------------------VAPSNEQLN

Query:  AAVRKRLLPTTHDSTVSRERVLLAFEILRSLSIDVGKIIAGEIFGCWRKKVGKLFFPNTISMLCKRAKVPESAEDVIL
          ++ +L+PT+H++TVS  R+LL   ++ S  IDVG+II  ++  C  KK   L FPN I+ LC++ KV E+A D IL
Subjt:  AAVRKRLLPTTHDSTVSRERVLLAFEILRSLSIDVGKIIAGEIFGCWRKKVGKLFFPNTISMLCKRAKVPESAEDVIL

PON46472.1 hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]8.2e-1535.58Show/hide
Query:  VVREFYANIDEEEGFQVIIHGVVVDWSPEAINSLYNLQD-------FLH------------------AGYN----------EMAVAPSNEQLNAAVRKRL
        +VREFYAN+ + E   V + GV V WS EAIN+++ L D       F+                   A +N            A+ P+ +     ++ RL
Subjt:  VVREFYANIDEEEGFQVIIHGVVVDWSPEAINSLYNLQD-------FLH------------------AGYN----------EMAVAPSNEQLNAAVRKRL

Query:  LPTTHDSTVSRERVLLAFEILRSLSIDVGKIIAGEIFGCWRKKVGKLFFPNTISMLCKRAKVP
        LPTTH  TVS++R+LL   +L   SI+VG++I  EI  C  +K G LFFP+ I+ LC+ A+ P
Subjt:  LPTTHDSTVSRERVLLAFEILRSLSIDVGKIIAGEIFGCWRKKVGKLFFPNTISMLCKRAKVP

TrEMBL top hitse value%identityAlignment
A0A2P5BCG4 Uncharacterized protein (Fragment)4.0e-1535.58Show/hide
Query:  VVREFYANIDEEEGFQVIIHGVVVDWSPEAINSLYNLQD-------FLH------------------AGYN----------EMAVAPSNEQLNAAVRKRL
        +VREFYAN+ + E   V + GV V WS EAIN+++ L D       F+                   A +N            A+ P+ +     ++ RL
Subjt:  VVREFYANIDEEEGFQVIIHGVVVDWSPEAINSLYNLQD-------FLH------------------AGYN----------EMAVAPSNEQLNAAVRKRL

Query:  LPTTHDSTVSRERVLLAFEILRSLSIDVGKIIAGEIFGCWRKKVGKLFFPNTISMLCKRAKVP
        LPTTH  TVS++R+LL   +L   SI+VG++I  EI  C  +K G LFFP+ I+ LC+ A+ P
Subjt:  LPTTHDSTVSRERVLLAFEILRSLSIDVGKIIAGEIFGCWRKKVGKLFFPNTISMLCKRAKVP

A0A6A2WM54 Uncharacterized protein2.3e-1531.52Show/hide
Query:  EDITEEPKPVNSQVVREFYANIDEEEGFQVIIHGVVVDWSPEAINSLYNLQDFL--HAGYNEMA---------------------------------VAP
        +     P  VN+ +V+EFYANI +   + + + G  + ++  AIN  ++LQD +  HA + E A                                 + P
Subjt:  EDITEEPKPVNSQVVREFYANIDEEEGFQVIIHGVVVDWSPEAINSLYNLQDFL--HAGYNEMA---------------------------------VAP

Query:  SNEQLNAAVRKRLLPTTHDSTVSRERVLLAFEILRSLSIDVGKIIAGEIFGCWRKKVGKLFFPNTISMLCKRAKVPESAEDVIL
          +  N  ++ +L+PT+H++TVS  R+LL   I+ S  IDVG II  ++  C  KK   L FPN I+ LC++ KV E+A D IL
Subjt:  SNEQLNAAVRKRLLPTTHDSTVSRERVLLAFEILRSLSIDVGKIIAGEIFGCWRKKVGKLFFPNTISMLCKRAKVPESAEDVIL

A0A6A2YMQ9 Uncharacterized protein1.0e-1532.6Show/hide
Query:  TEEPKPVNSQVVREFYANIDEEEGFQVIIHGVVVDWSPEAINSLYNLQDFL--HAGYNEMA---------------------------------VAPSNE
        T  P  VN+ VV+EFYANI +     + + G  + ++P AI   ++LQD +  HA + E A                                 + P  +
Subjt:  TEEPKPVNSQVVREFYANIDEEEGFQVIIHGVVVDWSPEAINSLYNLQDFL--HAGYNEMA---------------------------------VAPSNE

Query:  QLNAAVRKRLLPTTHDSTVSRERVLLAFEILRSLSIDVGKIIAGEIFGCWRKKVGKLFFPNTISMLCKRAKVPESAEDVIL
          N  ++ +L+PT++++TVS  R+LL   I  S  IDVG+II  ++  C  KK   L FPN I+ LC++ KV E+A D IL
Subjt:  QLNAAVRKRLLPTTHDSTVSRERVLLAFEILRSLSIDVGKIIAGEIFGCWRKKVGKLFFPNTISMLCKRAKVPESAEDVIL

A0A6A3B6J9 RT_RNaseH_2 domain-containing protein6.1e-1633.94Show/hide
Query:  SEVLQKVI----EDITEEPKPVNSQVVREFYANIDEEEGFQVIIHGVVVDWSPEAINSLYNL----QDFLHAGYNEMAVAPSNEQLNAAVRKRLLPTTHD
        SEVL  V     +   + P  VN+ +V+EFY+NI E     +++HG+ + ++P AIN  + L    Q       +   + P  +  N  ++ +LLPT+H+
Subjt:  SEVLQKVI----EDITEEPKPVNSQVVREFYANIDEEEGFQVIIHGVVVDWSPEAINSLYNL----QDFLHAGYNEMAVAPSNEQLNAAVRKRLLPTTHD

Query:  STVSRERVLLAFEILRSLSIDVGKIIAGEIFGCWRKKVGKLFFPNTISMLCKRAKVPESAEDVIL
        +TVS +R++L   I+  L+ID+GKII  +   C ++    L FPN I+ L ++ KV E   D IL
Subjt:  STVSRERVLLAFEILRSLSIDVGKIIAGEIFGCWRKKVGKLFFPNTISMLCKRAKVPESAEDVIL

A0A6A3BU96 Uncharacterized protein1.2e-1431.46Show/hide
Query:  PKPVNSQVVREFYANIDEEEGFQVIIHGVVVDWSPEAINSLYNLQDFL--HAGYNEMA---------------------------------VAPSNEQLN
        P  VN+ +V+EFYANI +     + + G  + ++  AIN  ++LQ+ +  HA + E A                                 + P  +  N
Subjt:  PKPVNSQVVREFYANIDEEEGFQVIIHGVVVDWSPEAINSLYNLQDFL--HAGYNEMA---------------------------------VAPSNEQLN

Query:  AAVRKRLLPTTHDSTVSRERVLLAFEILRSLSIDVGKIIAGEIFGCWRKKVGKLFFPNTISMLCKRAKVPESAEDVIL
          ++ +L+PT+H++TVS  R+LL   ++ S  IDVG+II  ++  C  KK   L FPN I+ LC++ KV E+A D IL
Subjt:  AAVRKRLLPTTHDSTVSRERVLLAFEILRSLSIDVGKIIAGEIFGCWRKKVGKLFFPNTISMLCKRAKVPESAEDVIL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAAAAGAGAGGAAGAAATGAGAGAGAGGTGGAGGAGGACATACCCATTACGCCTGAAGCCCAAGAAGAAGGTGAAAAAGAAAAGAACACCTATAGAAAGAGAGGC
CAAGCGGCTTAAAAGACTACAAGAGGCAGAAGTTTCTGAAGTTCTGCAGAAGGTCATTGAAGATATCACAGAGGAGCCAAAGCCTGTGAATTCACAAGTGGTGCGAGAGT
TCTACGCAAACATCGACGAGGAAGAGGGTTTTCAAGTGATTATTCATGGAGTCGTTGTTGATTGGAGTCCCGAGGCCATAAATTCATTGTACAACCTTCAAGATTTCTTG
CATGCTGGTTACAACGAGATGGCAGTAGCGCCATCTAACGAGCAGTTGAATGCTGCTGTTCGGAAGAGGTTGCTTCCAACAACTCATGACTCCACAGTCTCTCGGGAAAG
AGTTCTTCTAGCTTTTGAAATACTAAGGTCTCTTAGCATCGATGTGGGTAAGATTATCGCTGGTGAAATTTTTGGATGTTGGCGTAAGAAGGTTGGGAAATTGTTCTTTC
CAAATACAATCTCAATGCTGTGTAAGAGAGCAAAGGTTCCAGAAAGCGCAGAAGATGTGATCCTACTGGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAAAAAGAGAGGAAGAAATGAGAGAGAGGTGGAGGAGGACATACCCATTACGCCTGAAGCCCAAGAAGAAGGTGAAAAAGAAAAGAACACCTATAGAAAGAGAGGC
CAAGCGGCTTAAAAGACTACAAGAGGCAGAAGTTTCTGAAGTTCTGCAGAAGGTCATTGAAGATATCACAGAGGAGCCAAAGCCTGTGAATTCACAAGTGGTGCGAGAGT
TCTACGCAAACATCGACGAGGAAGAGGGTTTTCAAGTGATTATTCATGGAGTCGTTGTTGATTGGAGTCCCGAGGCCATAAATTCATTGTACAACCTTCAAGATTTCTTG
CATGCTGGTTACAACGAGATGGCAGTAGCGCCATCTAACGAGCAGTTGAATGCTGCTGTTCGGAAGAGGTTGCTTCCAACAACTCATGACTCCACAGTCTCTCGGGAAAG
AGTTCTTCTAGCTTTTGAAATACTAAGGTCTCTTAGCATCGATGTGGGTAAGATTATCGCTGGTGAAATTTTTGGATGTTGGCGTAAGAAGGTTGGGAAATTGTTCTTTC
CAAATACAATCTCAATGCTGTGTAAGAGAGCAAAGGTTCCAGAAAGCGCAGAAGATGTGATCCTACTGGACTAG
Protein sequenceShow/hide protein sequence
MAKREEEMRERWRRTYPLRLKPKKKVKKKRTPIEREAKRLKRLQEAEVSEVLQKVIEDITEEPKPVNSQVVREFYANIDEEEGFQVIIHGVVVDWSPEAINSLYNLQDFL
HAGYNEMAVAPSNEQLNAAVRKRLLPTTHDSTVSRERVLLAFEILRSLSIDVGKIIAGEIFGCWRKKVGKLFFPNTISMLCKRAKVPESAEDVILLD