CuGenDBv2

Gene ID	Lag0016016
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	clathrin coat assembly protein AP180
Genome location	chr12:31580536..31580964
RNA-Seq Expression	Lag0016016
Synteny	Lag0016016
Gene Ontology terms	GO:0006900 - vesicle budding from membrane (biological process) GO:0048268 - clathrin coat assembly (biological process) GO:0072583 - clathrin-dependent endocytosis (biological process) GO:0005794 - Golgi apparatus (cellular component) GO:0005905 - clathrin-coated pit (cellular component) GO:0030136 - clathrin-coated vesicle (cellular component) GO:0000149 - SNARE binding (molecular function) GO:0005545 - 1-phosphatidylinositol binding (molecular function) GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding (molecular function) GO:0032050 - clathrin heavy chain binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6589271.1 Clathrin coat assembly protein 180, partial [Cucurbita argyrosperma subsp. sororia]

1.4e-13

51.22

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Query:  PQEWLNFFTPSVGDDLFVKPFSVE--HHHNNPFLQDSNDLFIIPPTFKVETKSPSRLEFFH-------SPTFKAETTNILFG
        PQ W +FF+PSVGD++FVKPF+ +  HH+NNPFLQDS+DLF + PTFK ET+        +       +PTF+AET   L G
Subjt:  PQEWLNFFTPSVGDDLFVKPFSVE--HHHNNPFLQDSNDLFIIPPTFKVETKSPSRLEFFH-------SPTFKAETTNILFG

KAG7022969.1 Clathrin coat assembly protein, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.4e-13

51.22

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Query:  PQEWLNFFTPSVGDDLFVKPFSVE--HHHNNPFLQDSNDLFIIPPTFKVETKSPSRLEFFH-------SPTFKAETTNILFG
        PQ W +FF+PSVGD++FVKPF+ +  HH+NNPFLQDS+DLF + PTFK ET+        +       +PTF+AET   L G
Subjt:  PQEWLNFFTPSVGDDLFVKPFSVE--HHHNNPFLQDSNDLFIIPPTFKVETKSPSRLEFFH-------SPTFKAETTNILFG

XP_004140244.1 clathrin coat assembly protein AP180 [Cucumis sativus]

9.6e-15

46.43

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Query:  PQEWLNFFTPSVGDDLFVKPFSVEHHHNNPFLQDSNDLFIIPPTFKVETK-SPS-RLEFFHSPTFKAETT-------NILFGESKWIVVRRLGP-NGNDF
        P+EW +FF+PS+GD+L+ KPFS +HH+ NPFLQDS+DLF  PPTFK E +  P+ R E   +PTF+AET        N  F E  +      GP NGND 
Subjt:  PQEWLNFFTPSVGDDLFVKPFSVEHHHNNPFLQDSNDLFIIPPTFKVETK-SPS-RLEFFHSPTFKAETT-------NILFGESKWIVVRRLGP-NGNDF

Query:  KVEEEETKMEEE
         + +EE+ ++++
Subjt:  KVEEEETKMEEE

XP_008449479.1 PREDICTED: clathrin coat assembly protein AP180 [Cucumis melo]

6.7e-16

47.32

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Query:  PQEWLNFFTPSVGDDLFVKPFSVEHHHNNPFLQDSNDLFIIPPTFKVETK-SPS-RLEFFHSPTFKAETTNIL-------FGESKWIVVRRLGP-NGNDF
        P+EW +FF+PS+GDDLF KPFS +HH+ NPFLQDS+DLF  PPTFK E +  P+ R E   +PTF+AET  +        F E  +      GP NGND 
Subjt:  PQEWLNFFTPSVGDDLFVKPFSVEHHHNNPFLQDSNDLFIIPPTFKVETK-SPS-RLEFFHSPTFKAETTNIL-------FGESKWIVVRRLGP-NGNDF

Query:  KVEEEETKMEEE
          +EE    +++
Subjt:  KVEEEETKMEEE

XP_038887470.1 clathrin coat assembly protein AP180 [Benincasa hispida]

2.5e-15

54.55

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Query:  PQEWLNFFTPSVGDDLFVKPFSVEHHHNNPFLQDSNDLFIIPPTFKVETK-------SPSRLEFFHSPTFKAETTNI
        PQEW +FF+PS+GDDLF KPFS +HH+NNPFLQDS+DL  +PPTFK E +         S+     +PTF+AET  +
Subjt:  PQEWLNFFTPSVGDDLFVKPFSVEHHHNNPFLQDSNDLFIIPPTFKVETK-------SPSRLEFFHSPTFKAETTNI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KGJ5 ENTH domain-containing protein

4.6e-15

46.43

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Query:  PQEWLNFFTPSVGDDLFVKPFSVEHHHNNPFLQDSNDLFIIPPTFKVETK-SPS-RLEFFHSPTFKAETT-------NILFGESKWIVVRRLGP-NGNDF
        P+EW +FF+PS+GD+L+ KPFS +HH+ NPFLQDS+DLF  PPTFK E +  P+ R E   +PTF+AET        N  F E  +      GP NGND 
Subjt:  PQEWLNFFTPSVGDDLFVKPFSVEHHHNNPFLQDSNDLFIIPPTFKVETK-SPS-RLEFFHSPTFKAETT-------NILFGESKWIVVRRLGP-NGNDF

Query:  KVEEEETKMEEE
         + +EE+ ++++
Subjt:  KVEEEETKMEEE

A0A1S3BN17 clathrin coat assembly protein AP180

3.2e-16

47.32

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Query:  PQEWLNFFTPSVGDDLFVKPFSVEHHHNNPFLQDSNDLFIIPPTFKVETK-SPS-RLEFFHSPTFKAETTNIL-------FGESKWIVVRRLGP-NGNDF
        P+EW +FF+PS+GDDLF KPFS +HH+ NPFLQDS+DLF  PPTFK E +  P+ R E   +PTF+AET  +        F E  +      GP NGND 
Subjt:  PQEWLNFFTPSVGDDLFVKPFSVEHHHNNPFLQDSNDLFIIPPTFKVETK-SPS-RLEFFHSPTFKAETTNIL-------FGESKWIVVRRLGP-NGNDF

Query:  KVEEEETKMEEE
          +EE    +++
Subjt:  KVEEEETKMEEE

A0A5D3C685 Clathrin coat assembly protein AP180

3.2e-16

47.32

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Query:  PQEWLNFFTPSVGDDLFVKPFSVEHHHNNPFLQDSNDLFIIPPTFKVETK-SPS-RLEFFHSPTFKAETTNIL-------FGESKWIVVRRLGP-NGNDF
        P+EW +FF+PS+GDDLF KPFS +HH+ NPFLQDS+DLF  PPTFK E +  P+ R E   +PTF+AET  +        F E  +      GP NGND 
Subjt:  PQEWLNFFTPSVGDDLFVKPFSVEHHHNNPFLQDSNDLFIIPPTFKVETK-SPS-RLEFFHSPTFKAETTNIL-------FGESKWIVVRRLGP-NGNDF

Query:  KVEEEETKMEEE
          +EE    +++
Subjt:  KVEEEETKMEEE

A0A6J1ESQ2 clathrin coat assembly protein AP180-like

1.1e-13

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Query:  PQEWLNFFTPSVGDDLFVKPFSVE--HHHNNPFLQDSNDLFIIPPTFKVETKSPSRLEFFH-------SPTFKAETTNILFG
        PQ W +FF+PSVGD++F+KPF+ +  HH+NNPFLQDS+DLF + PTFK ET+        +       +PTF+AET   L G
Subjt:  PQEWLNFFTPSVGDDLFVKPFSVE--HHHNNPFLQDSNDLFIIPPTFKVETKSPSRLEFFH-------SPTFKAETTNILFG

A0A6J1JET6 clathrin coat assembly protein AP180-like

5.7e-13

48.78

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Query:  PQEWLNFFTPSVGDDLFVKPFS--VEHHHNNPFLQDSNDLFIIPPTFKVETKSPSRLEFFH-------SPTFKAETTNILFG
        PQ W +F++P VGD++FVKPF+   +HH+NNPFLQDS+DLF + PTFK ET+        +       +PTF+AET   L G
Subjt:  PQEWLNFFTPSVGDDLFVKPFS--VEHHHNNPFLQDSNDLFIIPPTFKVETKSPSRLEFFH-------SPTFKAETTNILFG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGAGCCACAAGAATGGCTGAATTTCTTCACACCCTCCGTCGGCGACGACCTATTTGTGAAACCGTTCTCGGTGGAGCACCATCACAACAACCCATTTCTTCAAGATTC
AAACGATTTATTCATAATTCCTCCAACATTCAAAGTAGAAACGAAATCACCTTCGCGCTTAGAATTTTTCCATAGCCCAACATTCAAAGCAGAAACAACAAACATTTTGT
TCGGTGAATCAAAATGGATTGTTGTTCGAAGATTGGGGCCTAATGGGAATGATTTCAAAGTGGAGGAGGAGGAAACAAAAATGGAGGAGGAAGGTCCCTCATCCCTTCTC
ATTTCATATCTGAAACAAAGCGATGATGTCCTCCCTCTTCTCGTCACTAGCACCAGAAAGGGTGGGAGCTCTTCCTCCCTCTCTCTCTTTTCTATTTAA

mRNA sequence

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Protein sequence

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MEPQEWLNFFTPSVGDDLFVKPFSVEHHHNNPFLQDSNDLFIIPPTFKVETKSPSRLEFFHSPTFKAETTNILFGESKWIVVRRLGPNGNDFKVEEEETKMEEEGPSSLL
ISYLKQSDDVLPLLVTSTRKGGSSSSLSLFSI

Lag0016016 (gene) of Sponge gourd (AG-4) v1 genome