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Lag0016048 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0016048
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr12:32398561..32398962
RNA-Seq ExpressionLag0016048
SyntenyLag0016048
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5458478.1 hypothetical protein F2P56_022503 [Juglans regia]9.9e-3053.23Show/hide
Query:  LAKALANCLKIVLNSIIVPTQFAFVPNRLILDNMTIGFESIDTLNSKKKGGKEGFIAMKIDMSKTYDRVEWLYIDKVMEQMGFSEKWRSSISNFLASVQF
        ++K +AN LK++L  II PTQ AF+P RLI DN+ + FE++ T+N++ + GK G +A+K+DMSK YDR+EW +I  V+ +MGF EKW   I N + +V +
Subjt:  LAKALANCLKIVLNSIIVPTQFAFVPNRLILDNMTIGFESIDTLNSKKKGGKEGFIAMKIDMSKTYDRVEWLYIDKVMEQMGFSEKWRSSISNFLASVQF

Query:  SVLVNGIPSESFKPKRGIRQGDPL
        S+LVNG P +SF P RGIRQGDPL
Subjt:  SVLVNGIPSESFKPKRGIRQGDPL

XP_018853114.2 uncharacterized protein LOC109015083 [Juglans regia]9.9e-3053.23Show/hide
Query:  LAKALANCLKIVLNSIIVPTQFAFVPNRLILDNMTIGFESIDTLNSKKKGGKEGFIAMKIDMSKTYDRVEWLYIDKVMEQMGFSEKWRSSISNFLASVQF
        ++K +AN LK++L  II PTQ AF+P RLI DN+ + FE++ T+N++ + GK G +A+K+DMSK YDR+EW +I  V+ +MGF EKW   I N + +V +
Subjt:  LAKALANCLKIVLNSIIVPTQFAFVPNRLILDNMTIGFESIDTLNSKKKGGKEGFIAMKIDMSKTYDRVEWLYIDKVMEQMGFSEKWRSSISNFLASVQF

Query:  SVLVNGIPSESFKPKRGIRQGDPL
        S+LVNG P +SF P RGIRQGDPL
Subjt:  SVLVNGIPSESFKPKRGIRQGDPL

XP_022157437.1 uncharacterized protein LOC111024135 [Momordica charantia]1.5e-3056.45Show/hide
Query:  LAKALANCLKIVLNSIIVPTQFAFVPNRLILDNMTIGFESIDTLNSKKKGGKEGFIAMKIDMSKTYDRVEWLYIDKVMEQMGFSEKWRSSISNFLASVQF
        +AKALAN LK V++S+I PTQ AFVP R I DN  IGFE I+ + +K+  GK G +AMK+DMSK YDRVEW Y+  +M +MGF+ +W   I N + SV+F
Subjt:  LAKALANCLKIVLNSIIVPTQFAFVPNRLILDNMTIGFESIDTLNSKKKGGKEGFIAMKIDMSKTYDRVEWLYIDKVMEQMGFSEKWRSSISNFLASVQF

Query:  SVLVNGIPSESFKPKRGIRQGDPL
        +VL+NG+P + F P RG+RQGDPL
Subjt:  SVLVNGIPSESFKPKRGIRQGDPL

XP_042954551.1 uncharacterized protein LOC122290956 [Carya illinoinensis]2.6e-3052.42Show/hide
Query:  LAKALANCLKIVLNSIIVPTQFAFVPNRLILDNMTIGFESIDTLNSKKKGGKEGFIAMKIDMSKTYDRVEWLYIDKVMEQMGFSEKWRSSISNFLASVQF
        +AK LAN LK +L  II  TQ AFVP R+I DN  + +E + ++ +++K G+E ++A+K+DMSK YDR+EW +I KV++QMGF  +W   I   + +V +
Subjt:  LAKALANCLKIVLNSIIVPTQFAFVPNRLILDNMTIGFESIDTLNSKKKGGKEGFIAMKIDMSKTYDRVEWLYIDKVMEQMGFSEKWRSSISNFLASVQF

Query:  SVLVNGIPSESFKPKRGIRQGDPL
        S+LVNGIP  SFKP RGIRQGDPL
Subjt:  SVLVNGIPSESFKPKRGIRQGDPL

XP_042974779.1 uncharacterized protein LOC122306417 [Carya illinoinensis]1.7e-2950.81Show/hide
Query:  LAKALANCLKIVLNSIIVPTQFAFVPNRLILDNMTIGFESIDTLNSKKKGGKEGFIAMKIDMSKTYDRVEWLYIDKVMEQMGFSEKWRSSISNFLASVQF
        +AK LAN LK +L  +I  TQ AFVP R+I DN  + +E + ++ +++K G+E ++A+K+DMSK YDR+EW +I +V++QMGF  +W   I     +V +
Subjt:  LAKALANCLKIVLNSIIVPTQFAFVPNRLILDNMTIGFESIDTLNSKKKGGKEGFIAMKIDMSKTYDRVEWLYIDKVMEQMGFSEKWRSSISNFLASVQF

Query:  SVLVNGIPSESFKPKRGIRQGDPL
        S+LVNGIP  SFKP RGIRQGDPL
Subjt:  SVLVNGIPSESFKPKRGIRQGDPL

TrEMBL top hitse value%identityAlignment
A0A2I4HAC4 uncharacterized protein LOC1090150834.8e-3053.23Show/hide
Query:  LAKALANCLKIVLNSIIVPTQFAFVPNRLILDNMTIGFESIDTLNSKKKGGKEGFIAMKIDMSKTYDRVEWLYIDKVMEQMGFSEKWRSSISNFLASVQF
        ++K +AN LK++L  II PTQ AF+P RLI DN+ + FE++ T+N++ + GK G +A+K+DMSK YDR+EW +I  V+ +MGF EKW   I N + +V +
Subjt:  LAKALANCLKIVLNSIIVPTQFAFVPNRLILDNMTIGFESIDTLNSKKKGGKEGFIAMKIDMSKTYDRVEWLYIDKVMEQMGFSEKWRSSISNFLASVQF

Query:  SVLVNGIPSESFKPKRGIRQGDPL
        S+LVNG P +SF P RGIRQGDPL
Subjt:  SVLVNGIPSESFKPKRGIRQGDPL

A0A5B6WEP5 Reverse transcriptase1.4e-2951.97Show/hide
Query:  YKL-AKALANCLKIVLNSIIVPTQFAFVPNRLILDNMTIGFESIDTLNSKKKGGKEGFIAMKIDMSKTYDRVEWLYIDKVMEQMGFSEKWRSSISNFLAS
        YKL AK +AN +++V++  I P Q AFVP RLI DN+ + +E + TL + KK GK+G +A+K+DMSK YDRVEW +++KVM+QMGF+++W   I   ++S
Subjt:  YKL-AKALANCLKIVLNSIIVPTQFAFVPNRLILDNMTIGFESIDTLNSKKKGGKEGFIAMKIDMSKTYDRVEWLYIDKVMEQMGFSEKWRSSISNFLAS

Query:  VQFSVLVNGIPSESFKPKRGIRQGDPL
        V +S ++NG+ SE+F P RG+RQGDPL
Subjt:  VQFSVLVNGIPSESFKPKRGIRQGDPL

A0A6J1DUG8 uncharacterized protein LOC1110241357.4e-3156.45Show/hide
Query:  LAKALANCLKIVLNSIIVPTQFAFVPNRLILDNMTIGFESIDTLNSKKKGGKEGFIAMKIDMSKTYDRVEWLYIDKVMEQMGFSEKWRSSISNFLASVQF
        +AKALAN LK V++S+I PTQ AFVP R I DN  IGFE I+ + +K+  GK G +AMK+DMSK YDRVEW Y+  +M +MGF+ +W   I N + SV+F
Subjt:  LAKALANCLKIVLNSIIVPTQFAFVPNRLILDNMTIGFESIDTLNSKKKGGKEGFIAMKIDMSKTYDRVEWLYIDKVMEQMGFSEKWRSSISNFLASVQF

Query:  SVLVNGIPSESFKPKRGIRQGDPL
        +VL+NG+P + F P RG+RQGDPL
Subjt:  SVLVNGIPSESFKPKRGIRQGDPL

A0A6P9EFN9 secreted RxLR effector protein 78-like4.1e-2952.03Show/hide
Query:  LAKALANCLKIVLNSIIVPTQFAFVPNRLILDNMTIGFESIDTLNSKKKGGKEGFIAMKIDMSKTYDRVEWLYIDKVMEQMGFSEKWRSSISNFLASVQF
        +AK LAN LK++L +II  TQ A+VP RLI DN+ + FE++ ++ SK KG K G++++K+DMSK YDR+EW +I+ VME+M F+ KW   I N + ++ +
Subjt:  LAKALANCLKIVLNSIIVPTQFAFVPNRLILDNMTIGFESIDTLNSKKKGGKEGFIAMKIDMSKTYDRVEWLYIDKVMEQMGFSEKWRSSISNFLASVQF

Query:  SVLVNGIPSESFKPKRGIRQGDP
        S+L+NGIP   F P RGIRQGDP
Subjt:  SVLVNGIPSESFKPKRGIRQGDP

A0A7N2LIH6 Uncharacterized protein1.1e-2953.23Show/hide
Query:  LAKALANCLKIVLNSIIVPTQFAFVPNRLILDNMTIGFESIDTLNSKKKGGKEGFIAMKIDMSKTYDRVEWLYIDKVMEQMGFSEKWRSSISNFLASVQF
        ++K LAN LK VL+ +I   Q AFVP R+I DN+ + FES+ ++N ++K GKEG +A+K+DMSK YDRVEW Y++ +M++MGF ++W S I   + SV F
Subjt:  LAKALANCLKIVLNSIIVPTQFAFVPNRLILDNMTIGFESIDTLNSKKKGGKEGFIAMKIDMSKTYDRVEWLYIDKVMEQMGFSEKWRSSISNFLASVQF

Query:  SVLVNGIPSESFKPKRGIRQGDPL
        SVL+NG P  SF P RG+RQGDP+
Subjt:  SVLVNGIPSESFKPKRGIRQGDPL

SwissProt top hitse value%identityAlignment
P16423 Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM9.7e-0431.58Show/hide
Query:  LAKALANCLKIVLNSII--VPTQFAFVPNRLILDNMTIGFESID-TLNSKKKGGKEGFIAMKIDMSKTYDRVEWLYIDKVMEQMGFSEKWRSSISNFLAS
        L + L   L   LNS I   P Q  F+P     DN TI    +D  L    K  +  +IA  +D+SK +D +    I   +   G  + +   + N    
Subjt:  LAKALANCLKIVLNSII--VPTQFAFVPNRLILDNMTIGFESID-TLNSKKKGGKEGFIAMKIDMSKTYDRVEWLYIDKVMEQMGFSEKWRSSISNFLAS

Query:  VQFSVLVNGIPSESFKPKRGIRQGDPL-PLTFS
           S+  +G  SE F P RG++QGDPL P+ F+
Subjt:  VQFSVLVNGIPSESFKPKRGIRQGDPL-PLTFS

Arabidopsis top hitse value%identityAlignment
AT4G20520.1 RNA binding;RNA-directed DNA polymerases3.2e-1033.33Show/hide
Query:  LKIVLNSIIVPTQFAFVPNRLILDNMTIGFESIDTLNSKKKGGKEGFIAMKIDMSKTYDRVEWLYIDKVMEQMGFSEKWRSSIS
        LK ++ ++I P Q +F+P R+  DN+    E++ ++  KK  G +G++ +K+D+ K YDR+ W Y++  +   GF E W   I+
Subjt:  LKIVLNSIIVPTQFAFVPNRLILDNMTIGFESIDTLNSKKKGGKEGFIAMKIDMSKTYDRVEWLYIDKVMEQMGFSEKWRSSIS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTACAAGCTGGCCAAAGCTTTAGCCAATTGCCTCAAAATAGTTTTAAACTCTATTATAGTTCCCACCCAATTCGCTTTTGTCCCGAATAGGTTAATATTGGACAA
CATGACCATCGGCTTCGAAAGCATTGACACCCTTAATAGCAAAAAAAAAGGGGGAAAAGAAGGTTTTATTGCTATGAAGATCGACATGAGCAAGACTTACGACAGGGTTG
AGTGGTTGTACATTGACAAAGTGATGGAGCAAATGGGTTTTAGCGAAAAGTGGAGAAGTAGCATATCTAACTTCTTGGCCTCGGTCCAATTCTCGGTGTTGGTGAATGGA
ATTCCTAGTGAAAGCTTCAAGCCAAAAAGAGGAATTAGGCAGGGAGATCCGCTCCCCCTTACATTTTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGTACAAGCTGGCCAAAGCTTTAGCCAATTGCCTCAAAATAGTTTTAAACTCTATTATAGTTCCCACCCAATTCGCTTTTGTCCCGAATAGGTTAATATTGGACAA
CATGACCATCGGCTTCGAAAGCATTGACACCCTTAATAGCAAAAAAAAAGGGGGAAAAGAAGGTTTTATTGCTATGAAGATCGACATGAGCAAGACTTACGACAGGGTTG
AGTGGTTGTACATTGACAAAGTGATGGAGCAAATGGGTTTTAGCGAAAAGTGGAGAAGTAGCATATCTAACTTCTTGGCCTCGGTCCAATTCTCGGTGTTGGTGAATGGA
ATTCCTAGTGAAAGCTTCAAGCCAAAAAGAGGAATTAGGCAGGGAGATCCGCTCCCCCTTACATTTTCTTGA
Protein sequenceShow/hide protein sequence
MSYKLAKALANCLKIVLNSIIVPTQFAFVPNRLILDNMTIGFESIDTLNSKKKGGKEGFIAMKIDMSKTYDRVEWLYIDKVMEQMGFSEKWRSSISNFLASVQFSVLVNG
IPSESFKPKRGIRQGDPLPLTFS