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Lag0016056 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0016056
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr12:32637258..32637662
RNA-Seq ExpressionLag0016056
SyntenyLag0016056
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KJB09365.1 hypothetical protein B456_001G136500 [Gossypium raimondii]2.4e-0736.63Show/hide
Query:  YSPFIAEALAVLEGLKLALRLNLSSTIVESDCQALVNMINGVSSTLAVDGVWVHDITNMAKNFGNIVFAHVGRGSNVSAHCLARKGL-SSGSFLWLDNLP
        YS  IAEAL VL GL+ AL L+ S+ I+ESD + +VN I   S   +    ++ D+ N+A+ F    F  + R  N +AH +A +G+ + G   W+++ P
Subjt:  YSPFIAEALAVLEGLKLALRLNLSSTIVESDCQALVNMINGVSSTLAVDGVWVHDITNMAKNFGNIVFAHVGRGSNVSAHCLARKGL-SSGSFLWLDNLP

Query:  V
        +
Subjt:  V

OMO59710.1 reverse transcriptase [Corchorus capsularis]1.4e-0730.17Show/hide
Query:  NFVGVSYSPFIAEALAVLEGLKLALRLNLSSTIVESDCQALVNMINGVSSTLAVDGVWVHDITNMAKNFGNIVFAHVGRGSNVSAHCLARKG-LSSGSFL
        N + VS   F+AE+ A +  L  +  +  S+ ++E D  +++  IN +S   +  G +V +  ++   F + V  H+GR  N  AH LA+ G L     +
Subjt:  NFVGVSYSPFIAEALAVLEGLKLALRLNLSSTIVESDCQALVNMINGVSSTLAVDGVWVHDITNMAKNFGNIVFAHVGRGSNVSAHCLARKG-LSSGSFL

Query:  WLDNLPVWLFSSLKDE
        W++++P WL  SLK +
Subjt:  WLDNLPVWLFSSLKDE

XP_015384077.1 uncharacterized protein LOC107176301 [Citrus sinensis]1.4e-0735.71Show/hide
Query:  GVSYSPFIAEALAVLEGLKLALRLNLSSTIVESDCQALVNMINGVSSTLAVDGVW--VHDITNMAKNFGNIVFAHVGRGSNVSAHCLARKGLSSGS-FLW
        G+  S   AEA A+  GLKLA R  LS+ I+ESDC  +V ++N   S     G+W  + +I N  + F N++  H+ R  NV AH LA+  + + +  +W
Subjt:  GVSYSPFIAEALAVLEGLKLALRLNLSSTIVESDCQALVNMINGVSSTLAVDGVW--VHDITNMAKNFGNIVFAHVGRGSNVSAHCLARKGLSSGS-FLW

Query:  LDNLPVWLFSSL
        +D++P  + + L
Subjt:  LDNLPVWLFSSL

XP_022158489.1 uncharacterized protein LOC111024968 [Momordica charantia]8.2e-0839.22Show/hide
Query:  SPFIAEALAVLEGLKLALRLNLSSTIVESDCQALVNMINGVSSTLAVDGVWVHDITNMAKNFGNIVFAHVGRGSNVSAHCLARKGLS-SGSFLWLDNLPV
        +P +A+ LA+ EGL LA RL +   +VE+D    +N+I   S        WV DI   A++F  I F HV R SN  A+ L R+ +S    FLW  + P+
Subjt:  SPFIAEALAVLEGLKLALRLNLSSTIVESDCQALVNMINGVSSTLAVDGVWVHDITNMAKNFGNIVFAHVGRGSNVSAHCLARKGLS-SGSFLWLDNLPV

Query:  WL
        WL
Subjt:  WL

XP_024036832.1 LRR receptor-like serine/threonine-protein kinase IOS1 [Citrus clementina]1.1e-0736.54Show/hide
Query:  IAEALAVLEGLKLALRLNLSSTIVESDCQALVNMINGVSSTLAVDGVWVHDITNMAKNFGNIVFAHVGRGSNVSAHCLARKGLSSGS-FLWLDNLPVWLF
        +AEA AVL GL+LA   +++S I+ESDC  +V ++N    + +     +  I N  KNF  ++  H+ R  N  AH LA++ +   S  +WL N+P  L+
Subjt:  IAEALAVLEGLKLALRLNLSSTIVESDCQALVNMINGVSSTLAVDGVWVHDITNMAKNFGNIVFAHVGRGSNVSAHCLARKGLSSGS-FLWLDNLPVWLF

Query:  SSLK
          LK
Subjt:  SSLK

TrEMBL top hitse value%identityAlignment
A0A0D2QQ75 RNase H domain-containing protein1.2e-0736.63Show/hide
Query:  YSPFIAEALAVLEGLKLALRLNLSSTIVESDCQALVNMINGVSSTLAVDGVWVHDITNMAKNFGNIVFAHVGRGSNVSAHCLARKGL-SSGSFLWLDNLP
        YS  IAEAL VL GL+ AL L+ S+ I+ESD + +VN I   S   +    ++ D+ N+A+ F    F  + R  N +AH +A +G+ + G   W+++ P
Subjt:  YSPFIAEALAVLEGLKLALRLNLSSTIVESDCQALVNMINGVSSTLAVDGVWVHDITNMAKNFGNIVFAHVGRGSNVSAHCLARKGL-SSGSFLWLDNLP

Query:  V
        +
Subjt:  V

A0A1R3GNW3 Reverse transcriptase6.8e-0830.17Show/hide
Query:  NFVGVSYSPFIAEALAVLEGLKLALRLNLSSTIVESDCQALVNMINGVSSTLAVDGVWVHDITNMAKNFGNIVFAHVGRGSNVSAHCLARKG-LSSGSFL
        N + VS   F+AE+ A +  L  +  +  S+ ++E D  +++  IN +S   +  G +V +  ++   F + V  H+GR  N  AH LA+ G L     +
Subjt:  NFVGVSYSPFIAEALAVLEGLKLALRLNLSSTIVESDCQALVNMINGVSSTLAVDGVWVHDITNMAKNFGNIVFAHVGRGSNVSAHCLARKG-LSSGSFL

Query:  WLDNLPVWLFSSLKDE
        W++++P WL  SLK +
Subjt:  WLDNLPVWLFSSLKDE

A0A6J1DX30 uncharacterized protein LOC1110248741.2e-0735.71Show/hide
Query:  SPFIAEALAVLEGLKLALRLNLSSTIVESDCQALVNMINGVSSTLAVDGVWVHDITNMAKNFGNIVFAHVGRGSNVSAHCLARKGLSSGS--FLWLDNLP
        SP +AE   +LEGLK A   N +   VESD    + +I     T   +  WV +I  +   F  I F+H  R  N +AH LA+ G++S S  + WL N P
Subjt:  SPFIAEALAVLEGLKLALRLNLSSTIVESDCQALVNMINGVSSTLAVDGVWVHDITNMAKNFGNIVFAHVGRGSNVSAHCLARKGLSSGS--FLWLDNLP

Query:  VWLFSSLKDEDP
         WL   ++ + P
Subjt:  VWLFSSLKDEDP

A0A6J1DZK3 uncharacterized protein LOC1110249684.0e-0839.22Show/hide
Query:  SPFIAEALAVLEGLKLALRLNLSSTIVESDCQALVNMINGVSSTLAVDGVWVHDITNMAKNFGNIVFAHVGRGSNVSAHCLARKGLS-SGSFLWLDNLPV
        +P +A+ LA+ EGL LA RL +   +VE+D    +N+I   S        WV DI   A++F  I F HV R SN  A+ L R+ +S    FLW  + P+
Subjt:  SPFIAEALAVLEGLKLALRLNLSSTIVESDCQALVNMINGVSSTLAVDGVWVHDITNMAKNFGNIVFAHVGRGSNVSAHCLARKGLS-SGSFLWLDNLPV

Query:  WL
        WL
Subjt:  WL

A0A803MUM1 Uncharacterized protein1.4e-0838.74Show/hide
Query:  SYSPFIAEALAVLEGLKLALRLNLSSTIVESDCQALVNMINGVSSTLAVDGVWVHDITNMAKNFGNIVFAHVGRGSNVSAHCLAR-KGLSSGSFLWLDNL
        S+   I EA A++ GLKLA++ N+   IVESDC+ LV ++NGV    +  G+   +I  +A+ F +IVFAHV R +N  AH +A    L   + +W    
Subjt:  SYSPFIAEALAVLEGLKLALRLNLSSTIVESDCQALVNMINGVSSTLAVDGVWVHDITNMAKNFGNIVFAHVGRGSNVSAHCLAR-KGLSSGSFLWLDNL

Query:  PVWLFSSLKDE
         VW   S+ D+
Subjt:  PVWLFSSLKDE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G13980.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein6.7e-0836.89Show/hide
Query:  SPFIAEALAVLEGLKLALRLNLSSTIVESDCQALVNMINGVSSTLAVDGVWVHDITNMAKNFGNIVFAHVGRGSNVSAHCLARKGLSSGSFLWLDN--LP
        +P  AE  A+L  L+          I+E DC+ L N+++G SS   +  + + DI   AK F N+ F+ V RG N  AH LA+ G +S  F + D+  LP
Subjt:  SPFIAEALAVLEGLKLALRLNLSSTIVESDCQALVNMINGVSSTLAVDGVWVHDITNMAKNFGNIVFAHVGRGSNVSAHCLARKGLSSGSFLWLDN--LP

Query:  VWL
        +WL
Subjt:  VWL

AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.4e-0432.11Show/hide
Query:  AVLEGLKLAL----RLNLSSTIVESDCQALVNMINGVSSTLAVDGVW------VHDITNMAKNFGNIVFAHVGRGSNVSAHCLARKGLSSGSF--LWLDN
        A LE L+ A+    R N    I ESD QALVN++N        D  W      + DI  +  +F  + F    RG N  A  +AR+ +S  ++       
Subjt:  AVLEGLKLAL----RLNLSSTIVESDCQALVNMINGVSSTLAVDGVW------VHDITNMAKNFGNIVFAHVGRGSNVSAHCLARKGLSSGSF--LWLDN

Query:  LPVWLFSSL
        +P WL S+L
Subjt:  LPVWLFSSL

AT3G09510.1 Ribonuclease H-like superfamily protein5.1e-0835.58Show/hide
Query:  SPFIAEALAVLEGLKLALRLNLSSTIVESDCQALVNMINGVS--STLAVDGVWVHDITNMAKNFGNIVFAHVGRGSNVSAHCLARKGLSSGSFL-WLDNL
        +P  AE  A+L  L+       +   +E DCQ L+N+ING+S  S+LA     + DI+  A  F +I F  + R  N  AH LA+ G +  +F     +L
Subjt:  SPFIAEALAVLEGLKLALRLNLSSTIVESDCQALVNMINGVS--STLAVDGVWVHDITNMAKNFGNIVFAHVGRGSNVSAHCLARKGLSSGSFL-WLDNL

Query:  PVWL
        P+WL
Subjt:  PVWL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTTGGTTGTGATGACAAATTTCGTTGGGGTGTCATATTCTCCATTCATTGCTGAAGCTTTGGCTGTTTTGGAGGGTCTTAAGCTTGCCCTTCGTTTAAATTTATC
CTCCACAATTGTTGAATCTGATTGTCAAGCTTTGGTTAACATGATAAATGGGGTTTCTTCAACGTTAGCTGTGGATGGCGTTTGGGTTCACGATATCACGAATATGGCGA
AGAACTTTGGCAATATTGTGTTTGCTCATGTGGGTCGTGGAAGTAATGTTTCTGCTCACTGTCTTGCAAGGAAAGGTCTTTCTTCTGGATCTTTTTTATGGCTTGATAAT
CTTCCTGTGTGGCTTTTTTCCTCTCTCAAGGATGAGGATCCTTTTGTTGTACTTGGCCCATGTGGCCTTTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGTTGGTTGTGATGACAAATTTCGTTGGGGTGTCATATTCTCCATTCATTGCTGAAGCTTTGGCTGTTTTGGAGGGTCTTAAGCTTGCCCTTCGTTTAAATTTATC
CTCCACAATTGTTGAATCTGATTGTCAAGCTTTGGTTAACATGATAAATGGGGTTTCTTCAACGTTAGCTGTGGATGGCGTTTGGGTTCACGATATCACGAATATGGCGA
AGAACTTTGGCAATATTGTGTTTGCTCATGTGGGTCGTGGAAGTAATGTTTCTGCTCACTGTCTTGCAAGGAAAGGTCTTTCTTCTGGATCTTTTTTATGGCTTGATAAT
CTTCCTGTGTGGCTTTTTTCCTCTCTCAAGGATGAGGATCCTTTTGTTGTACTTGGCCCATGTGGCCTTTCTTGA
Protein sequenceShow/hide protein sequence
MVLVVMTNFVGVSYSPFIAEALAVLEGLKLALRLNLSSTIVESDCQALVNMINGVSSTLAVDGVWVHDITNMAKNFGNIVFAHVGRGSNVSAHCLARKGLSSGSFLWLDN
LPVWLFSSLKDEDPFVVLGPCGLS