; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0016059 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0016059
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr12:32656359..32658353
RNA-Seq ExpressionLag0016059
SyntenyLag0016059
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.9e-0856.92Show/hide
Query:  HIEEKSTFDICFYRLKVTSDQPKRKMDNLEVKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSL
        H    S FD    RLK+T+DQ +R+M +L+ K F E N D+K+HS +PSRMKRK SV INTEGSL
Subjt:  HIEEKSTFDICFYRLKVTSDQPKRKMDNLEVKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSL

KAA0051997.1 hypothetical protein E6C27_scaffold60G004810 [Cucumis melo var. makuwa]5.0e-1150Show/hide
Query:  MFDVHLHSTFSFPKAKCLHIEEKSTFDICFYRLKVTSDQPKRKMDNLEVKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGS
        M +++LH  FSF K K    ++       F RLK+T DQ +R+M +L+VK F E N D+K+HS +PSRMKRK SV INTEG+
Subjt:  MFDVHLHSTFSFPKAKCLHIEEKSTFDICFYRLKVTSDQPKRKMDNLEVKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGS

KAA0055462.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.2e-0856.92Show/hide
Query:  HIEEKSTFDICFYRLKVTSDQPKRKMDNLEVKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSL
        H    STFD    RLK+T+DQ +R+M +L+ K F E N D+K+H+ +PSRMKRK SV INTEGSL
Subjt:  HIEEKSTFDICFYRLKVTSDQPKRKMDNLEVKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSL

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.2e-0856.92Show/hide
Query:  HIEEKSTFDICFYRLKVTSDQPKRKMDNLEVKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSL
        H    STFD    RLK+T+DQ +R+M +L+ K F E N D+K+H+ +PSRMKRK SV INTEGSL
Subjt:  HIEEKSTFDICFYRLKVTSDQPKRKMDNLEVKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSL

TYK30948.1 hypothetical protein E5676_scaffold455G001730 [Cucumis melo var. makuwa]1.8e-0850Show/hide
Query:  MFDVHLHSTFSFPKAKCLHIEEKSTFDICFYRLKVTSDQPKRKMDNLEVKLFDEVNSDEKLHSSIPSRMKRKFSVLIN
        M +V+ HS FSF KAK LHIEE       F  LK+T+DQ +R+M  L+ K F E N+D+K++S + S MKRK  V IN
Subjt:  MFDVHLHSTFSFPKAKCLHIEEKSTFDICFYRLKVTSDQPKRKMDNLEVKLFDEVNSDEKLHSSIPSRMKRKFSVLIN

TrEMBL top hitse value%identityAlignment
A0A5A7UC34 Uncharacterized protein2.4e-1150Show/hide
Query:  MFDVHLHSTFSFPKAKCLHIEEKSTFDICFYRLKVTSDQPKRKMDNLEVKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGS
        M +++LH  FSF K K    ++       F RLK+T DQ +R+M +L+VK F E N D+K+HS +PSRMKRK SV INTEG+
Subjt:  MFDVHLHSTFSFPKAKCLHIEEKSTFDICFYRLKVTSDQPKRKMDNLEVKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGS

A0A5A7UI09 Retrotransposon gag protein2.5e-0856.92Show/hide
Query:  HIEEKSTFDICFYRLKVTSDQPKRKMDNLEVKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSL
        H    STFD    RLK+T+DQ +R+M +L+ K F E N D+K+H+ +PSRMKRK SV INTEGSL
Subjt:  HIEEKSTFDICFYRLKVTSDQPKRKMDNLEVKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSL

A0A5A7VRG7 Retrotransposon gag protein4.3e-0856.92Show/hide
Query:  HIEEKSTFDICFYRLKVTSDQPKRKMDNLEVKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSL
        H    S FD    RLK+T+DQ +R+M +L+ K F E N D+K+HS +PSRMKRK SV INTEGSL
Subjt:  HIEEKSTFDICFYRLKVTSDQPKRKMDNLEVKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSL

A0A5D3CCI8 Retrotransposon gag protein2.5e-0856.92Show/hide
Query:  HIEEKSTFDICFYRLKVTSDQPKRKMDNLEVKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSL
        H    STFD    RLK+T+DQ +R+M +L+ K F E N D+K+H+ +PSRMKRK SV INTEGSL
Subjt:  HIEEKSTFDICFYRLKVTSDQPKRKMDNLEVKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSL

A0A5D3E580 Uncharacterized protein8.7e-0950Show/hide
Query:  MFDVHLHSTFSFPKAKCLHIEEKSTFDICFYRLKVTSDQPKRKMDNLEVKLFDEVNSDEKLHSSIPSRMKRKFSVLIN
        M +V+ HS FSF KAK LHIEE       F  LK+T+DQ +R+M  L+ K F E N+D+K++S + S MKRK  V IN
Subjt:  MFDVHLHSTFSFPKAKCLHIEEKSTFDICFYRLKVTSDQPKRKMDNLEVKLFDEVNSDEKLHSSIPSRMKRKFSVLIN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTCGACATCTGTTTTTATCGCCTCAAAGTAACAAG
CGATCAACCTAAAAGAAAAATGGACAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAGTGACGAGAAGCTTCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTTT
CTGTTCTCATAAATACGGAAGGTTCCTTGAAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTATTCCTTCTCCAAGTTCGAAGGTTCTTCGT
TGTATCCTGCTGCGTTGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGTGAAGGATCTTATGTGGTGCGTTGTTGCATT
GTTCCCTCTTCTCTCAAGTTCGATGGTTCTCACGCAGCTTTGCTGGAGTTTCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTCCGTTGCAGTTCCTTCTTTTCAAGGTC
GAAGGTTCTCACTCGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTCTG
CAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGTAGTTCCTTCCCCCAAGTTTGAAGGTTCTCACGCGCTTCGCTGCAATTCCTTCCTCCAAGTTCAAAG
GTTCTCACGCGCTTCGGTGAAGTTCCTTCCTCCAAGTCTGAAGTTCCTTCCTCACAGTTCAAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGT
TCTCACGTCGCTTCGCTGCAATTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTACCTTCCTCCAAGTTCGAAGGTTCTCA
CTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTTCGAAGGTTCTCAAGCGCTGTGATTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGT
TGCTCCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCATGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGC
GCCTCTCTCCACTGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGCTCCTTCCTCCA
AGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCTACTGCTCCTTC
TCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCTTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTACCGTTGCTCCTTTTCAAATGTTTGGCGGC
GGTTGACGTCCTCGTTCCGCTTCATCTTCAAATGTTGGCAGTTGACGGCGTTCGCTTCGCTTCATCTTCAAAAATTGACTGTTGATAACTTCACTTCATATTCAAAAGTT
GACGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTCGACATCTGTTTTTATCGCCTCAAAGTAACAAG
CGATCAACCTAAAAGAAAAATGGACAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAGTGACGAGAAGCTTCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTTT
CTGTTCTCATAAATACGGAAGGTTCCTTGAAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTATTCCTTCTCCAAGTTCGAAGGTTCTTCGT
TGTATCCTGCTGCGTTGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGTGAAGGATCTTATGTGGTGCGTTGTTGCATT
GTTCCCTCTTCTCTCAAGTTCGATGGTTCTCACGCAGCTTTGCTGGAGTTTCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTCCGTTGCAGTTCCTTCTTTTCAAGGTC
GAAGGTTCTCACTCGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTCTG
CAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGTAGTTCCTTCCCCCAAGTTTGAAGGTTCTCACGCGCTTCGCTGCAATTCCTTCCTCCAAGTTCAAAG
GTTCTCACGCGCTTCGGTGAAGTTCCTTCCTCCAAGTCTGAAGTTCCTTCCTCACAGTTCAAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGT
TCTCACGTCGCTTCGCTGCAATTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTACCTTCCTCCAAGTTCGAAGGTTCTCA
CTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTTCGAAGGTTCTCAAGCGCTGTGATTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGT
TGCTCCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCATGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGC
GCCTCTCTCCACTGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGCTCCTTCCTCCA
AGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCTACTGCTCCTTC
TCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCTTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTACCGTTGCTCCTTTTCAAATGTTTGGCGGC
GGTTGACGTCCTCGTTCCGCTTCATCTTCAAATGTTGGCAGTTGACGGCGTTCGCTTCGCTTCATCTTCAAAAATTGACTGTTGATAACTTCACTTCATATTCAAAAGTT
GACGGTTGA
Protein sequenceShow/hide protein sequence
MFDVHLHSTFSFPKAKCLHIEEKSTFDICFYRLKVTSDQPKRKMDNLEVKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEGSLKFLLSKFEGPYTVRYCVIPSPSSKVLR
CILLRCSFSKFEGSQLYDCYVVPPPSVKDLMWCVVALFPLLSSSMVLTQLCWSFFSPSSKVLTRSVAVPSFQGRRFSLAALQFFLPKFEGSRTSLQFLLPNSKVLTRFAL
QFLPPSSKVLTRFAVVPSPKFEGSHALRCNSFLQVQRFSRASVKFLPPSLKFLPHSSKVLTRFAAVPSPQVRRFSRRFAAIPSSKFEGSHIASLRAALRCSTFLQVRRFS
LASLQFLPPSSKVSKVLKRCDSLQFLPPSSKVLMRFVAPSSKFEGSLTRCCSSFLQVRRFPHALRSLLLQVRRRLSPLFLPPSSKVLMRFVATFLQVRRFSHALLQLLPP
SSKVPSRASLAPSPSSKALLSTAPSPSSKALLSTAPSPSSKVLLSTPLFEGSPLRFSFSKFEGYRCSFSNVWRRLTSSFRFIFKCWQLTAFASLHLQKLTVDNFTSYSKV
DG