; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0016061 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0016061
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr12:32671216..32672147
RNA-Seq ExpressionLag0016061
SyntenyLag0016061
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MQL77781.1 hypothetical protein [Colocasia esculenta]3.5e-3835.37Show/hide
Query:  MKDEVSQKFKVPTFQPYDGKKDPVAHLNAYKSWMDFHGISDAIKCRAFFFTLTGSTKHWFERLKRRSISCFKDLARAFLAQFMGAREQRKPHINLLTVKQ
        ++ +VS K  +PT  PYDG  DPV H++ ++S M FHG SDA KCRAF  TL  + + W E L   SI+ F  L ++F   F+G R Q +   +LL V+Q
Subjt:  MKDEVSQKFKVPTFQPYDGKKDPVAHLNAYKSWMDFHGISDAIKCRAFFFTLTGSTKHWFERLKRRSISCFKDLARAFLAQFMGAREQRKPHINLLTVKQ

Query:  QPGESLRDYITRFNNEAL---------------QQTDEG----------------------------------------------------------GRG
        + GE+L D++ RF  EAL               Q T +G                                                          GR 
Subjt:  QPGESLRDYITRFNNEAL---------------QQTDEG----------------------------------------------------------GRG

Query:  RPDRGNYLKKFEKYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGHSTRDYIQLKDEIEALIRNGYLS-----SPQRPR
          D    L+ F  YTP ++  EQIL EIRN   L  P++++S+P KRD+++YC FHRDHGH T +  QLKDEIE LI+ GYL      + +RPR
Subjt:  RPDRGNYLKKFEKYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGHSTRDYIQLKDEIEALIRNGYLS-----SPQRPR

MQL93545.1 hypothetical protein [Colocasia esculenta]4.6e-3833.77Show/hide
Query:  MKDEVSQKFKVPTFQPYDGKKDPVAHLNAYKSWMDFHGISDAIKCRAFFFTLTGSTKHWFERLKRRSISCFKDLARAFLAQFMGAREQRKPHINLLTVKQ
        ++  VS K  +PT  PYDG  DP  H++ ++S M FHG SDA KCRAF  TL  +T+ WFE L   SIS F+ L ++F   F+G R Q +   +LL V+Q
Subjt:  MKDEVSQKFKVPTFQPYDGKKDPVAHLNAYKSWMDFHGISDAIKCRAFFFTLTGSTKHWFERLKRRSISCFKDLARAFLAQFMGAREQRKPHINLLTVKQ

Query:  QPGESLRDYITRFNNEAL---------------------------------------------------------QQTDEGGRGRPD-------------
        + GE+L D++ RF  EAL                                                         +Q ++  + RP              
Subjt:  QPGESLRDYITRFNNEAL---------------------------------------------------------QQTDEGGRGRPD-------------

Query:  RGNYLKKFEKYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGHSTRDYIQLKDEIEALIRNGYLS-----SPQRPRPTRDDPGKD
         G+  + F  YTP ++  EQIL EIRN   +  P++++S+P +RD+++YC FHRDHGH T +  QLKDEIE LI+ GYL      +  RPR     P + 
Subjt:  RGNYLKKFEKYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGHSTRDYIQLKDEIEALIRNGYLS-----SPQRPRPTRDDPGKD

Query:  DSGPP
         +  P
Subjt:  DSGPP

MQM08867.1 hypothetical protein [Colocasia esculenta]1.0e-3736.06Show/hide
Query:  MKDEVSQKFKVPTFQPYDGKKDPVAHLNAYKSWMDFHGISDAIKCRAFFFTLTGSTKHWFERLKRRSISCFKDLARAFLAQFMGAREQRKPHINLLTVKQ
        ++  VS K  +PT  PYDG  DP  H++ ++S M FHG SDA KCRAF  TL  + + WFE L   SIS F+ L ++F   F+G R Q +   +LL V+Q
Subjt:  MKDEVSQKFKVPTFQPYDGKKDPVAHLNAYKSWMDFHGISDAIKCRAFFFTLTGSTKHWFERLKRRSISCFKDLARAFLAQFMGAREQRKPHINLLTVKQ

Query:  QPGESLRDYITRF-----------------------NNEALQQTDEG-------------------GRGRPDRGNYLKKFEKYTPTSIPQEQILMEIRNT
        + GE+L D++ R                         + A  + ++G                   GR   D       F  YTP ++  EQIL EIRN 
Subjt:  QPGESLRDYITRF-----------------------NNEALQQTDEG-------------------GRGRPDRGNYLKKFEKYTPTSIPQEQILMEIRNT

Query:  NLLNVPRKLKSNPDKRDKSQYCLFHRDHGHSTRDYIQLKDEIEALIRNGY-----LSSPQRPRPTRDDP
        + +  P++++S+P +RD+++YC FHR+HGH T +  QLKDEIE LI+ GY     L +  RPR     P
Subjt:  NLLNVPRKLKSNPDKRDKSQYCLFHRDHGHSTRDYIQLKDEIEALIRNGY-----LSSPQRPRPTRDDP

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]4.0e-5039.14Show/hide
Query:  MKDEVSQKFKVPTFQPYDGKKDPVAHLNAYKSWMDFHGISDAIKCRAFFFTLTGSTKHWFERLKRRSISCFKDLARAFLAQFMGAREQRKPHINLLTVKQ
        M+++V  KFK+PT + +D   DPV HL+AY+ WMD +G+S+A++CR F  TL GS + WF +LKR SIS FK LARAF+ QF+G R + +P   LLT+KQ
Subjt:  MKDEVSQKFKVPTFQPYDGKKDPVAHLNAYKSWMDFHGISDAIKCRAFFFTLTGSTKHWFERLKRRSISCFKDLARAFLAQFMGAREQRKPHINLLTVKQ

Query:  QPGESLRDYITRFNNEALQ------------------------------------------------------------QTD----------EGG----R
        +  ESLRDY+ RFN E LQ                                                            +TD          +G     R
Subjt:  QPGESLRDYITRFNNEALQ------------------------------------------------------------QTD----------EGG----R

Query:  GRPDRGNYLKKFEKYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGHSTRDYIQLKDEIEALIRNGYLSS-PQRPRPTRDDPGKD
         R  + +  +KFEKYTPT++P EQ+LMEI++  LL  P ++K++  KR K +YCLFHRDHGH+T+D   LK+E+E LIR GYL    + P+ T++  G+ 
Subjt:  GRPDRGNYLKKFEKYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGHSTRDYIQLKDEIEALIRNGYLSS-PQRPRPTRDDPGKD

Query:  DSGP
        D  P
Subjt:  DSGP

XP_024041095.1 uncharacterized protein LOC112098853 [Citrus clementina]7.8e-3833.79Show/hide
Query:  KFKVPTFQPYDGKKDPVAHLNAYKSWMDFHGISDAIKCRAFFFTLTGSTKHWFERLKRRSISCFKDLARAFLAQFMGAREQRKPHINLLTVKQQPGESLR
        +F +P  +PYDG++DP  HL  Y++ M+  G S AI CRAF  TL G+ + WF RL+  SIS F DL+R F + F  AR++ KP   LLTVKQQ GE+LR
Subjt:  KFKVPTFQPYDGKKDPVAHLNAYKSWMDFHGISDAIKCRAFFFTLTGSTKHWFERLKRRSISCFKDLARAFLAQFMGAREQRKPHINLLTVKQQPGESLR

Query:  DYITRFNNEAL--------------------------------------------------------QQTDEGGRG-------------RPD--------
        DYI R+NNE                                                          Q+  E  +G             RPD        
Subjt:  DYITRFNNEAL--------------------------------------------------------QQTDEGGRG-------------RPD--------

Query:  -----------RGNYLKKFEKYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGHSTRDYIQLKDEIEALIRNGYL
                   R     +F  +T  + P+EQILM++RN  L   P  +K+NP +R+ ++YC FH+DHGH T +  +LK++IE+L+R G L
Subjt:  -----------RGNYLKKFEKYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGHSTRDYIQLKDEIEALIRNGYL

TrEMBL top hitse value%identityAlignment
A0A2N9E6Z9 Ribonuclease H8.4e-3837.76Show/hide
Query:  KFKVPTFQPYDGKKDPVAHLNAYKSWMDFHGISDAIKCRAFFFTLTGSTKHWFERLKRRSISCFKDLARAFLAQFMGAREQRKPHINLLTVKQQPGESLR
        KF++P+ + +DG KDP+ HL ++K+ M   G+ D I CRAF  TL G  + WF++L   S+  F  L+  F   F+G +  R+   +LL VKQ+ GE+LR
Subjt:  KFKVPTFQPYDGKKDPVAHLNAYKSWMDFHGISDAIKCRAFFFTLTGSTKHWFERLKRRSISCFKDLARAFLAQFMGAREQRKPHINLLTVKQQPGESLR

Query:  DYITRFNNEAL---------------------------------------QQTDEGGRGRPDRGNYLKKFEKYTPTSIPQEQILMEIRNTNLLNVPRKLK
         Y+TRFN E L                                       +Q D  GRG    GN  ++F  +TP + P + I M+IRN   L  P KL 
Subjt:  DYITRFNNEAL---------------------------------------QQTDEGGRGRPDRGNYLKKFEKYTPTSIPQEQILMEIRNTNLLNVPRKLK

Query:  SNPDKRDKSQYCLFHRDHGHSTRDYIQLKDEIEALIRNGYL
        ++PDKR + +YC FHRDHGH+T D   LK +IE LI+ G L
Subjt:  SNPDKRDKSQYCLFHRDHGHSTRDYIQLKDEIEALIRNGYL

A0A2N9EL41 Reverse transcriptase3.2e-3735.04Show/hide
Query:  KFKVPTFQPYDGKKDPVAHLNAYKSWMDFHGISDAIKCRAFFFTLTGSTKHWFERLKRRSISCFKDLARAFLAQFMGAREQRKPHINLLTVKQQPGESLR
        +FKVP  + +DG KDP  +L A+K+ M    + + + CRAF   L GS + WF +L+  SI  F  L+RAF+  F+G++ + +P I+LL+VKQ  GESLR
Subjt:  KFKVPTFQPYDGKKDPVAHLNAYKSWMDFHGISDAIKCRAFFFTLTGSTKHWFERLKRRSISCFKDLARAFLAQFMGAREQRKPHINLLTVKQQPGESLR

Query:  DYITRFNNEAL-----------------------QQTDEGGRGRPDRGNYLK---------------KFEKYTPTSIPQEQILMEIRNTNLLNVPRKLKS
         ++ RFN EA+                       ++  E  +  P +    K               KF  +TP + P +++L++I++   L  P K++S
Subjt:  DYITRFNNEAL-----------------------QQTDEGGRGRPDRGNYLK---------------KFEKYTPTSIPQEQILMEIRNTNLLNVPRKLKS

Query:  NPDKRDKSQYCLFHRDHGHSTRDYIQLKDEIEALIRNG----YLSSPQRPRPTR
        +P+ R K+ YC FHRDHGH T D + LK+++E LIR G    Y+S P   RP +
Subjt:  NPDKRDKSQYCLFHRDHGHSTRDYIQLKDEIEALIRNG----YLSSPQRPRPTR

A0A2N9IUL6 Uncharacterized protein2.9e-3836.26Show/hide
Query:  KFKVPTFQPYDGKKDPVAHLNAYKSWMDFHGISDAIKCRAFFFTLTGSTKHWFERLKRRSISCFKDLARAFLAQFMGAREQRKPHINLLTVKQQPGESLR
        KFKVP  + +DG KDP+ +L+++++ M  HG+SD I CR F   L GS + WF +L+  SI  F  L+RAF+  F+G R   +P   LL ++Q+ GESLR
Subjt:  KFKVPTFQPYDGKKDPVAHLNAYKSWMDFHGISDAIKCRAFFFTLTGSTKHWFERLKRRSISCFKDLARAFLAQFMGAREQRKPHINLLTVKQQPGESLR

Query:  DYITRFNNEALQQTDEGGR--------------------------------GRPDRGNYLKKFEK--------------YTPTSIPQEQILMEIRNTNLL
         Y+ RFN EA+ Q DE                                    +  + +Y K   K              +TP ++  +Q+L++I++   +
Subjt:  DYITRFNNEALQQTDEGGR--------------------------------GRPDRGNYLKKFEK--------------YTPTSIPQEQILMEIRNTNLL

Query:  NVPRKLKSNPDKRDKSQYCLFHRDHGHSTRDYIQLKDEIEALIRNGYLSSPQR---------PRPTRDDPGKD
          P KL+S+P+KR K+ YC FHRDHGH+T D   LK++IEALIR G L    R         PRP R D  KD
Subjt:  NVPRKLKSNPDKRDKSQYCLFHRDHGHSTRDYIQLKDEIEALIRNGYLSSPQR---------PRPTRDDPGKD

A0A6J1DWY0 uncharacterized protein LOC1110252931.9e-5039.14Show/hide
Query:  MKDEVSQKFKVPTFQPYDGKKDPVAHLNAYKSWMDFHGISDAIKCRAFFFTLTGSTKHWFERLKRRSISCFKDLARAFLAQFMGAREQRKPHINLLTVKQ
        M+++V  KFK+PT + +D   DPV HL+AY+ WMD +G+S+A++CR F  TL GS + WF +LKR SIS FK LARAF+ QF+G R + +P   LLT+KQ
Subjt:  MKDEVSQKFKVPTFQPYDGKKDPVAHLNAYKSWMDFHGISDAIKCRAFFFTLTGSTKHWFERLKRRSISCFKDLARAFLAQFMGAREQRKPHINLLTVKQ

Query:  QPGESLRDYITRFNNEALQ------------------------------------------------------------QTD----------EGG----R
        +  ESLRDY+ RFN E LQ                                                            +TD          +G     R
Subjt:  QPGESLRDYITRFNNEALQ------------------------------------------------------------QTD----------EGG----R

Query:  GRPDRGNYLKKFEKYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGHSTRDYIQLKDEIEALIRNGYLSS-PQRPRPTRDDPGKD
         R  + +  +KFEKYTPT++P EQ+LMEI++  LL  P ++K++  KR K +YCLFHRDHGH+T+D   LK+E+E LIR GYL    + P+ T++  G+ 
Subjt:  GRPDRGNYLKKFEKYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGHSTRDYIQLKDEIEALIRNGYLSS-PQRPRPTRDDPGKD

Query:  DSGP
        D  P
Subjt:  DSGP

A0A7J0DN86 Ribonuclease H4.9e-3839.46Show/hide
Query:  MKDEVSQKFKVPT-FQPYDGKKDPVAHLNAYKSWMDFHGISDAIKCRAFFFTLTGSTKHWFERLKRRSISCFKDLARAFLAQFMGAREQRKPHINLLTVK
        ++ ++S KFK+PT    Y+GK DP+ HL++YKS M   G SD + C+AF  TL G  + WF +L   +I  F DL+R F+A FM  R ++K   +L T+ 
Subjt:  MKDEVSQKFKVPT-FQPYDGKKDPVAHLNAYKSWMDFHGISDAIKCRAFFFTLTGSTKHWFERLKRRSISCFKDLARAFLAQFMGAREQRKPHINLLTVK

Query:  QQPGESLRDYITRFNNEALQQTD-----------EGGRGRPDRGNYLKKFEKY--TPTSIPQEQILMEIRNTNLLNVPRKLKSNPDKRDKSQYCLFHRDH
        Q+  E+L+D++ RFN   L+  D           EG R  P R     +  ++   P   P  Q+L EI++   +  P K+K++P KR++++YC FHRDH
Subjt:  QQPGESLRDYITRFNNEALQQTD-----------EGGRGRPDRGNYLKKFEKY--TPTSIPQEQILMEIRNTNLLNVPRKLKSNPDKRDKSQYCLFHRDH

Query:  GHSTRDYIQLKDEIEALIRNGYL
        GH+T D  QLK++I  LI+ GYL
Subjt:  GHSTRDYIQLKDEIEALIRNGYL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGATGAGGTGTCCCAAAAGTTCAAGGTACCTACATTCCAACCGTATGATGGCAAGAAAGACCCAGTGGCGCATCTAAATGCCTACAAAAGCTGGATGGACTTCCA
CGGCATCTCAGATGCAATCAAGTGTCGTGCATTCTTTTTCACTCTAACAGGATCAACCAAGCATTGGTTTGAAAGGCTGAAAAGGAGATCCATCAGTTGTTTCAAGGATT
TAGCCCGAGCATTCCTTGCACAGTTCATGGGAGCCAGAGAACAGCGCAAGCCTCACATCAACCTCTTAACAGTCAAACAACAGCCAGGTGAGAGCTTGCGTGATTATATA
ACGCGTTTCAACAACGAAGCACTGCAGCAGACAGACGAAGGAGGCCGAGGCCGACCAGACCGAGGAAACTACTTGAAGAAGTTTGAGAAGTATACCCCTACTTCAATCCC
GCAAGAGCAGATCTTAATGGAAATTCGGAATACGAATCTCCTTAACGTACCCAGGAAGCTGAAGTCAAATCCTGACAAAAGAGACAAAAGTCAGTATTGTCTTTTCCATC
GAGATCATGGACATTCAACAAGGGACTACATTCAGCTGAAAGATGAAATTGAGGCACTGATTCGAAACGGATACTTGAGTTCACCACAAAGGCCGAGGCCGACCAGAGAT
GACCCAGGAAAAGATGATAGTGGACCTCCTCTAGTAATCCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGATGAGGTGTCCCAAAAGTTCAAGGTACCTACATTCCAACCGTATGATGGCAAGAAAGACCCAGTGGCGCATCTAAATGCCTACAAAAGCTGGATGGACTTCCA
CGGCATCTCAGATGCAATCAAGTGTCGTGCATTCTTTTTCACTCTAACAGGATCAACCAAGCATTGGTTTGAAAGGCTGAAAAGGAGATCCATCAGTTGTTTCAAGGATT
TAGCCCGAGCATTCCTTGCACAGTTCATGGGAGCCAGAGAACAGCGCAAGCCTCACATCAACCTCTTAACAGTCAAACAACAGCCAGGTGAGAGCTTGCGTGATTATATA
ACGCGTTTCAACAACGAAGCACTGCAGCAGACAGACGAAGGAGGCCGAGGCCGACCAGACCGAGGAAACTACTTGAAGAAGTTTGAGAAGTATACCCCTACTTCAATCCC
GCAAGAGCAGATCTTAATGGAAATTCGGAATACGAATCTCCTTAACGTACCCAGGAAGCTGAAGTCAAATCCTGACAAAAGAGACAAAAGTCAGTATTGTCTTTTCCATC
GAGATCATGGACATTCAACAAGGGACTACATTCAGCTGAAAGATGAAATTGAGGCACTGATTCGAAACGGATACTTGAGTTCACCACAAAGGCCGAGGCCGACCAGAGAT
GACCCAGGAAAAGATGATAGTGGACCTCCTCTAGTAATCCATTGA
Protein sequenceShow/hide protein sequence
MKDEVSQKFKVPTFQPYDGKKDPVAHLNAYKSWMDFHGISDAIKCRAFFFTLTGSTKHWFERLKRRSISCFKDLARAFLAQFMGAREQRKPHINLLTVKQQPGESLRDYI
TRFNNEALQQTDEGGRGRPDRGNYLKKFEKYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGHSTRDYIQLKDEIEALIRNGYLSSPQRPRPTRD
DPGKDDSGPPLVIH