; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0016088 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0016088
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr12:32975298..32976612
RNA-Seq ExpressionLag0016088
SyntenyLag0016088
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025558 - Domain of unknown function DUF4283
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015380691.1 uncharacterized protein LOC107174364 [Citrus sinensis]4.7e-2731.86Show/hide
Query:  MVTKLMSNKRTNVDAFRSVLRLVWKIHYHTRIESTGDNVFFTQFNSKMEKARILNSGPWTFDRALLVMVSPKENERVGDMQFHFVDFWIHIMNVPVNCMT
        +V K++  +  N + F+S L+ VW+     +IES G+N F  +F  + +K R+L  GPW FDRALLV+  PK    +    F    FWI I NVP+ CM 
Subjt:  MVTKLMSNKRTNVDAFRSVLRLVWKIHYHTRIESTGDNVFFTQFNSKMEKARILNSGPWTFDRALLVMVSPKENERVGDMQFHFVDFWIHIMNVPVNCMT

Query:  VKMAKVLGEAVGTILEVDSD-------------------------------GDDNWSGPILRVQLLDMCFNCGVIGHAFRECQEAPAECKEVTGRLPYGE
         ++ + LG  +G + E+++D                               G+ +   P++  +L D C+ CG+IGH ++EC +   + KE   +LPYG 
Subjt:  VKMAKVLGEAVGTILEVDSD-------------------------------GDDNWSGPILRVQLLDMCFNCGVIGHAFRECQEAPAECKEVTGRLPYGE

Query:  WLRA
        W++A
Subjt:  WLRA

XP_015382410.1 uncharacterized protein LOC107175497 [Citrus sinensis]4.7e-2731.86Show/hide
Query:  MVTKLMSNKRTNVDAFRSVLRLVWKIHYHTRIESTGDNVFFTQFNSKMEKARILNSGPWTFDRALLVMVSPKENERVGDMQFHFVDFWIHIMNVPVNCMT
        +V K+M  +  N++  RS +  +W+ +   RIES G N+F  +F  + +K R++  GPW FD AL+V+  PK    + +  F    FW+H+ N+P+  M 
Subjt:  MVTKLMSNKRTNVDAFRSVLRLVWKIHYHTRIESTGDNVFFTQFNSKMEKARILNSGPWTFDRALLVMVSPKENERVGDMQFHFVDFWIHIMNVPVNCMT

Query:  VKMAKVLGEAVGTILEVDSDGDDNWSG-------------------------------PILRVQLLDMCFNCGVIGHAFRECQEAPAECKEVTGRLPYGE
          M + LGE +G++ ++D+D + N  G                               PIL  +L D CF CG+IGH ++EC E   + K+    LPYG 
Subjt:  VKMAKVLGEAVGTILEVDSDGDDNWSG-------------------------------PILRVQLLDMCFNCGVIGHAFRECQEAPAECKEVTGRLPYGE

Query:  WLRA
        W++A
Subjt:  WLRA

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]8.8e-3434.55Show/hide
Query:  MVTKLMSNKRTNVDAFRSVLRLVWKIHYHTRIESTGDNVFFTQFNSKMEKARILNSGPWTFDRALLVMVSPKENERVGDMQFHFVDFWIHIMNVPVNCMT
        +V KL ++KR + +A RSV++ VW++H  TR E  G N++   F S  EK+R+L+SGPWTF+++LLV+ SP    +  DM F+F  FWI I N+P  C++
Subjt:  MVTKLMSNKRTNVDAFRSVLRLVWKIHYHTRIESTGDNVFFTQFNSKMEKARILNSGPWTFDRALLVMVSPKENERVGDMQFHFVDFWIHIMNVPVNCMT

Query:  VKMAKVLGEAVGTILEVDSDGDDNWSGPILRV-------------------------------QLLDMCFNCGVIGHAFRECQEAPAECKEVTGRLP--Y
         +MA +LG  +G + E++ DG D W+GP +RV                               +L D C+ CG IGH+ REC++     K VT   P  Y
Subjt:  VKMAKVLGEAVGTILEVDSDGDDNWSGPILRV-------------------------------QLLDMCFNCGVIGHAFRECQEAPAECKEVTGRLP--Y

Query:  GEWLRAPFKVRGTPGGGRSDGKRGEGDGGDEGFGGNVRHEVFSARGEGNDEGVLGRGVNEEGNPKSVNGLLVEKG
        G+WLRA    +           R    GG  G G    H+V   RG   D         +   P+S +   VE+G
Subjt:  GEWLRAPFKVRGTPGGGRSDGKRGEGDGGDEGFGGNVRHEVFSARGEGNDEGVLGRGVNEEGNPKSVNGLLVEKG

XP_022155933.1 uncharacterized protein LOC111022932 [Momordica charantia]2.7e-2744.36Show/hide
Query:  VTKLMSNKRTNVDAFRSVLRLVWKIHYHTRIESTGDNVFFTQFNSKMEKARILNSGPWTFDRALLVMVSPKENERVGDMQFHFVDFWIHIMNVPVNCMTV
        V KL ++KR +V+AFRSV++ +WK+H  T IE+ G N++   F S  EK R+L SGPW+F+ +LLV+ SP   ++  DM F+F   WI I  +P  CM  
Subjt:  VTKLMSNKRTNVDAFRSVLRLVWKIHYHTRIESTGDNVFFTQFNSKMEKARILNSGPWTFDRALLVMVSPKENERVGDMQFHFVDFWIHIMNVPVNCMTV

Query:  KMAKVLGEAVGTILEVDSDGDDNWSGPILRVQL
         MAK LG  +G + E+D +G   W+GP +RV++
Subjt:  KMAKVLGEAVGTILEVDSDGDDNWSGPILRVQL

XP_024955847.1 uncharacterized protein LOC112498636 [Citrus sinensis]2.1e-2732.35Show/hide
Query:  MVTKLMSNKRTNVDAFRSVLRLVWKIHYHTRIESTGDNVFFTQFNSKMEKARILNSGPWTFDRALLVMVSPKENERVGDMQFHFVDFWIHIMNVPVNCMT
        +V K+M  +  N++  RS +  +W+ +   RIES G N+F  +F  + +K R++  GPW FD AL+V+  PK    + +  F    FW+H+ N+P+  M 
Subjt:  MVTKLMSNKRTNVDAFRSVLRLVWKIHYHTRIESTGDNVFFTQFNSKMEKARILNSGPWTFDRALLVMVSPKENERVGDMQFHFVDFWIHIMNVPVNCMT

Query:  VKMAKVLGEAVGTILEVDSDGDDNWSG-------------------------------PILRVQLLDMCFNCGVIGHAFRECQEAPAECKEVTGRLPYGE
          M + LGE +G++ E+D+D + N  G                               PIL  +L D CF CG+IGH ++EC E   + K+    LPYG 
Subjt:  VKMAKVLGEAVGTILEVDSDGDDNWSG-------------------------------PILRVQLLDMCFNCGVIGHAFRECQEAPAECKEVTGRLPYGE

Query:  WLRA
        W++A
Subjt:  WLRA

TrEMBL top hitse value%identityAlignment
A0A5C7HKY9 CCHC-type domain-containing protein1.1e-2634.63Show/hide
Query:  MVTKLMSNKRTNVDAFRSVLRLVWKIHYHTRIESTGDNVFFTQFNSKMEKARILNSGPWTFDRALLVMVSPKENERVGDMQFHFVDFWIHIMNVPVNCMT
        +V K+++NK  N   FR V R +W       IE+  +NVF  QF    ++ RIL  GPWTFD AL+V+  P     V DM F + +FW+ I  VP+ CMT
Subjt:  MVTKLMSNKRTNVDAFRSVLRLVWKIHYHTRIESTGDNVFFTQFNSKMEKARILNSGPWTFDRALLVMVSPKENERVGDMQFHFVDFWIHIMNVPVNCMT

Query:  VKMAKVLGEAVGTILEVDSDGDDNWSGPILRVQLL--------------------------------DMCFNCGVIGHAFRECQEAPAECKEVTGR-LPY
         ++ + LG  VG + +VD       SG  LRV+++                                + CF CG +GH  REC +AP    E     LP+
Subjt:  VKMAKVLGEAVGTILEVDSDGDDNWSGPILRVQLL--------------------------------DMCFNCGVIGHAFRECQEAPAECKEVTGR-LPY

Query:  GEWLR
        G WLR
Subjt:  GEWLR

A0A5C7HUW5 CCHC-type domain-containing protein5.0e-2732.68Show/hide
Query:  MVTKLMSNKRTNVDAFRSVLRLVWKIHYHTRIESTGDNVFFTQFNSKMEKARILNSGPWTFDRALLVMVSPKENERVGDMQFHFVDFWIHIMNVPVNCMT
        +V K+++ KR N +AF+ V+  +W       IE+ GDN F   F S   ++ I + GPW FDR L+V+  P     +  + FH V+FW+ I N+P+ CM 
Subjt:  MVTKLMSNKRTNVDAFRSVLRLVWKIHYHTRIESTGDNVFFTQFNSKMEKARILNSGPWTFDRALLVMVSPKENERVGDMQFHFVDFWIHIMNVPVNCMT

Query:  VKMAKVLGEAVGTILEVDSDGDDNW------------SGPILRV-------------------QLLDMCFNCGVIGHAFRECQEAPAECKEVTG-RLPYG
         +MA+ L E +GT++E+ +D  + W            S P+LR                    +L + C+ CG+IGH  R+C +  A  + + G    YG
Subjt:  VKMAKVLGEAVGTILEVDSDGDDNW------------SGPILRV-------------------QLLDMCFNCGVIGHAFRECQEAPAECKEVTG-RLPYG

Query:  EWLRA
         WLRA
Subjt:  EWLRA

A0A5C7I5K8 DUF4283 domain-containing protein7.3e-2631.42Show/hide
Query:  MVTKLMSNKRTNVDAFRSVLRLVWKIHYHTRIESTGDNVFFTQFNSKMEKARILNSGPWTFDRALLVMVSPKENERVGDMQFHFVDFWIHIMNVPVNCMT
        +V K+++ KR N +AFR+V+  +W    +  IE  G+N+F   FN+  ++ RI   GPW FDR+L+V+V P+    +  + F+  +FW+ I ++P+ CM 
Subjt:  MVTKLMSNKRTNVDAFRSVLRLVWKIHYHTRIESTGDNVFFTQFNSKMEKARILNSGPWTFDRALLVMVSPKENERVGDMQFHFVDFWIHIMNVPVNCMT

Query:  VKMAKVLGEAVGTILEVDSDGDDNWSGPILRVQLLDMCFNCGVIGHAFRECQEAPAECKEVTG-RLPYGEWLRA------PFKVRGTPGGGRSDGKRGEG
         +  K L E +GT++E+  +  + W G  +RV+       CG +GH   EC +  A+ + + G    YG WL+A        K      GG S  KR   
Subjt:  VKMAKVLGEAVGTILEVDSDGDDNWSGPILRVQLLDMCFNCGVIGHAFRECQEAPAECKEVTG-RLPYGEWLRA------PFKVRGTPGGGRSDGKRGEG

Query:  DGGDE-GFGGNVRHEVFSARGEGNDE
        D  +    G  VR ++      G  E
Subjt:  DGGDE-GFGGNVRHEVFSARGEGNDE

A0A6J1D765 uncharacterized protein LOC1110179024.2e-3434.55Show/hide
Query:  MVTKLMSNKRTNVDAFRSVLRLVWKIHYHTRIESTGDNVFFTQFNSKMEKARILNSGPWTFDRALLVMVSPKENERVGDMQFHFVDFWIHIMNVPVNCMT
        +V KL ++KR + +A RSV++ VW++H  TR E  G N++   F S  EK+R+L+SGPWTF+++LLV+ SP    +  DM F+F  FWI I N+P  C++
Subjt:  MVTKLMSNKRTNVDAFRSVLRLVWKIHYHTRIESTGDNVFFTQFNSKMEKARILNSGPWTFDRALLVMVSPKENERVGDMQFHFVDFWIHIMNVPVNCMT

Query:  VKMAKVLGEAVGTILEVDSDGDDNWSGPILRV-------------------------------QLLDMCFNCGVIGHAFRECQEAPAECKEVTGRLP--Y
         +MA +LG  +G + E++ DG D W+GP +RV                               +L D C+ CG IGH+ REC++     K VT   P  Y
Subjt:  VKMAKVLGEAVGTILEVDSDGDDNWSGPILRV-------------------------------QLLDMCFNCGVIGHAFRECQEAPAECKEVTGRLP--Y

Query:  GEWLRAPFKVRGTPGGGRSDGKRGEGDGGDEGFGGNVRHEVFSARGEGNDEGVLGRGVNEEGNPKSVNGLLVEKG
        G+WLRA    +           R    GG  G G    H+V   RG   D         +   P+S +   VE+G
Subjt:  GEWLRAPFKVRGTPGGGRSDGKRGEGDGGDEGFGGNVRHEVFSARGEGNDEGVLGRGVNEEGNPKSVNGLLVEKG

A0A6J1DP89 uncharacterized protein LOC1110229321.3e-2744.36Show/hide
Query:  VTKLMSNKRTNVDAFRSVLRLVWKIHYHTRIESTGDNVFFTQFNSKMEKARILNSGPWTFDRALLVMVSPKENERVGDMQFHFVDFWIHIMNVPVNCMTV
        V KL ++KR +V+AFRSV++ +WK+H  T IE+ G N++   F S  EK R+L SGPW+F+ +LLV+ SP   ++  DM F+F   WI I  +P  CM  
Subjt:  VTKLMSNKRTNVDAFRSVLRLVWKIHYHTRIESTGDNVFFTQFNSKMEKARILNSGPWTFDRALLVMVSPKENERVGDMQFHFVDFWIHIMNVPVNCMTV

Query:  KMAKVLGEAVGTILEVDSDGDDNWSGPILRVQL
         MAK LG  +G + E+D +G   W+GP +RV++
Subjt:  KMAKVLGEAVGTILEVDSDGDDNWSGPILRVQL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G42140.1 zinc ion binding;nucleic acid binding6.1e-0928.83Show/hide
Query:  FNSKMEKARILNSGPWTFDRALLVMVSPKENERVGDMQFHFVDFWIHIMNVPVNCMTVKMAKVLGEAVGTILEVDSDGDDNWSGPILRVQ---LLDMCFN
        F S+     IL  GPW+F+  + V+   +  +   D +F  + FWI I  +P+  +T ++   +GE +G  LE +   D +    +L+ Q   L + C  
Subjt:  FNSKMEKARILNSGPWTFDRALLVMVSPKENERVGDMQFHFVDFWIHIMNVPVNCMTVKMAKVLGEAVGTILEVDSDGDDNWSGPILRVQ---LLDMCFN

Query:  CGVIGHAFREC
        CG++ H   EC
Subjt:  CGVIGHAFREC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGACAAAACTGATGTCAAATAAGAGAACAAATGTAGATGCATTTAGATCAGTATTGCGGTTAGTGTGGAAAATTCACTACCACACGAGGATTGAATCGACAGGCGA
TAATGTCTTCTTTACCCAATTCAATTCGAAAATGGAGAAGGCCAGGATTTTGAATAGTGGTCCGTGGACCTTTGATAGGGCCTTATTGGTAATGGTGTCCCCTAAGGAAA
ATGAGAGGGTAGGGGATATGCAGTTCCATTTTGTGGATTTTTGGATTCATATTATGAATGTCCCGGTGAATTGTATGACTGTGAAGATGGCGAAGGTTTTGGGTGAGGCG
GTGGGAACGATCCTAGAAGTTGATAGTGATGGGGATGATAACTGGTCAGGCCCTATTCTAAGAGTGCAGCTGTTGGATATGTGTTTTAATTGTGGGGTTATTGGCCATGC
GTTTAGGGAATGCCAGGAGGCTCCCGCGGAGTGTAAGGAAGTCACAGGGAGGCTTCCGTATGGTGAGTGGCTGCGGGCTCCGTTTAAGGTTAGGGGGACGCCGGGAGGAG
GGAGGAGTGATGGGAAGAGAGGGGAAGGGGATGGAGGCGATGAAGGGTTTGGGGGCAATGTTAGGCATGAGGTCTTTAGCGCTAGGGGTGAGGGGAATGATGAAGGGGTG
TTGGGTCGGGGTGTGAATGAGGAGGGCAACCCAAAATCTGTGAATGGTTTGCTGGTGGAGAAGGGAGGAGGAAGTACTGAATCTCATAATGTGGCGGATGGAGGAGGGAG
TGAGGGGGGTGAGAAAGTGCAAAATGAATCGGGGGAGGATAGGGCACTGGGTGAGAGGGAGCGGAAGGGGAAGGGTGTGTTGGTGGAAGGTGCTGAGGAGGAGAGGATGT
TGGATGGCTGGGTTGGGGAGGAGGGTATTGGAAGGCCAATTGGGGGAGGGGCCCTTATTATCAAGGAGGGTGGTGGAGGAGGTAGGAAATGGTGGAGGAAGGAGAGAATG
GATGAAGGGGATAAGGAAGTGGGAATGGAGTCGAGGCTTGGAAAAAGAGGCCTAGAGTTGGGATATGGGGAGGGCGCTCTCTCTGAGCAGGAAGGATTGGGTGGTAAGAG
GATGAGGGGCACTGATGTTGTTCTGGACTCAGAGATGGTAGCGGCGAACCCTGGGGACCAGGGTCGCCGACAGTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGACAAAACTGATGTCAAATAAGAGAACAAATGTAGATGCATTTAGATCAGTATTGCGGTTAGTGTGGAAAATTCACTACCACACGAGGATTGAATCGACAGGCGA
TAATGTCTTCTTTACCCAATTCAATTCGAAAATGGAGAAGGCCAGGATTTTGAATAGTGGTCCGTGGACCTTTGATAGGGCCTTATTGGTAATGGTGTCCCCTAAGGAAA
ATGAGAGGGTAGGGGATATGCAGTTCCATTTTGTGGATTTTTGGATTCATATTATGAATGTCCCGGTGAATTGTATGACTGTGAAGATGGCGAAGGTTTTGGGTGAGGCG
GTGGGAACGATCCTAGAAGTTGATAGTGATGGGGATGATAACTGGTCAGGCCCTATTCTAAGAGTGCAGCTGTTGGATATGTGTTTTAATTGTGGGGTTATTGGCCATGC
GTTTAGGGAATGCCAGGAGGCTCCCGCGGAGTGTAAGGAAGTCACAGGGAGGCTTCCGTATGGTGAGTGGCTGCGGGCTCCGTTTAAGGTTAGGGGGACGCCGGGAGGAG
GGAGGAGTGATGGGAAGAGAGGGGAAGGGGATGGAGGCGATGAAGGGTTTGGGGGCAATGTTAGGCATGAGGTCTTTAGCGCTAGGGGTGAGGGGAATGATGAAGGGGTG
TTGGGTCGGGGTGTGAATGAGGAGGGCAACCCAAAATCTGTGAATGGTTTGCTGGTGGAGAAGGGAGGAGGAAGTACTGAATCTCATAATGTGGCGGATGGAGGAGGGAG
TGAGGGGGGTGAGAAAGTGCAAAATGAATCGGGGGAGGATAGGGCACTGGGTGAGAGGGAGCGGAAGGGGAAGGGTGTGTTGGTGGAAGGTGCTGAGGAGGAGAGGATGT
TGGATGGCTGGGTTGGGGAGGAGGGTATTGGAAGGCCAATTGGGGGAGGGGCCCTTATTATCAAGGAGGGTGGTGGAGGAGGTAGGAAATGGTGGAGGAAGGAGAGAATG
GATGAAGGGGATAAGGAAGTGGGAATGGAGTCGAGGCTTGGAAAAAGAGGCCTAGAGTTGGGATATGGGGAGGGCGCTCTCTCTGAGCAGGAAGGATTGGGTGGTAAGAG
GATGAGGGGCACTGATGTTGTTCTGGACTCAGAGATGGTAGCGGCGAACCCTGGGGACCAGGGTCGCCGACAGTTATGA
Protein sequenceShow/hide protein sequence
MVTKLMSNKRTNVDAFRSVLRLVWKIHYHTRIESTGDNVFFTQFNSKMEKARILNSGPWTFDRALLVMVSPKENERVGDMQFHFVDFWIHIMNVPVNCMTVKMAKVLGEA
VGTILEVDSDGDDNWSGPILRVQLLDMCFNCGVIGHAFRECQEAPAECKEVTGRLPYGEWLRAPFKVRGTPGGGRSDGKRGEGDGGDEGFGGNVRHEVFSARGEGNDEGV
LGRGVNEEGNPKSVNGLLVEKGGGSTESHNVADGGGSEGGEKVQNESGEDRALGERERKGKGVLVEGAEEERMLDGWVGEEGIGRPIGGGALIIKEGGGGGRKWWRKERM
DEGDKEVGMESRLGKRGLELGYGEGALSEQEGLGGKRMRGTDVVLDSEMVAANPGDQGRRQL