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Lag0016096 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0016096
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionF-box domain-containing protein
Genome locationchr12:33088652..33089298
RNA-Seq ExpressionLag0016096
SyntenyLag0016096
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR036047 - F-box-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8653057.1 hypothetical protein Csa_020016 [Cucumis sativus]1.6e-1732.42Show/hide
Query:  MEKLEMTRRRRKIMKGNWELLPHIHDLIFSKLYISNFPVCRLVCKSWNGLVLDYASFSSKLLLSNILLFSDFIPPRCSLSRWKTKIHCLDIDKLSLTTLM
        +E +E++ RR  I  G   L P I   IFSKL IS+ P CRLV  +WN LVLDYAS +    L N  L S       +      K+HC+++D   L+   
Subjt:  MEKLEMTRRRRKIMKGNWELLPHIHDLIFSKLYISNFPVCRLVCKSWNGLVLDYASFSSKLLLSNILLFSDFIPPRCSLSRWKTKIHCLDIDKLSLTTLM

Query:  DVSSSKD-----------------------------SPCECF-YDDDIFNPMTGEFFKLNGPVSEDDNFVFGFGFNPNTKQYKLFK-----------ANY
        D     +                             S C  + +   IFNPMT EF +++   + DD +++GFGF+P TKQYKLF+           ++ 
Subjt:  DVSSSKD-----------------------------SPCECF-YDDDIFNPMTGEFFKLNGPVSEDDNFVFGFGFNPNTKQYKLFK-----------ANY

Query:  LESSLTMEIFTIGRGGVGN
        +++  TME+ T GR G  +
Subjt:  LESSLTMEIFTIGRGGVGN

XP_008459707.1 PREDICTED: F-box protein At3g07870-like [Cucumis melo]1.6e-2039.3Show/hide
Query:  MEKLEMTRRRRKIMKGNWELLPHIHDLIFSKLYISNFPVCRLVCKSWNGLVLDYASFSSKLLLSNILL-----FSDFIPPRCSLSRWKTKIHCLDIDK--
        ME LE   ++R  M  N  L PHI   IFSKL ISN P CR+VCK+WN LVL+YAS +  L  + + L      S++IP + S      KIHC+DID   
Subjt:  MEKLEMTRRRRKIMKGNWELLPHIHDLIFSKLYISNFPVCRLVCKSWNGLVLDYASFSSKLLLSNILL-----FSDFIPPRCSLSRWKTKIHCLDIDK--

Query:  -----------LSLTTLMDVSSSKDSPCECFYD---DDIFNPMTGEFFKLNGPVSEDDNFVFGFGFNPNTKQYKLFKA------NYLESSLTMEIFTIGR
                    S  T+++  +     C+  +D   + I NPMT EF ++  P  E D    GFGF+P TKQYKLF+       N  +    MEIFT   
Subjt:  -----------LSLTTLMDVSSSKDSPCECFYD---DDIFNPMTGEFFKLNGPVSEDDNFVFGFGFNPNTKQYKLFKA------NYLESSLTMEIFTIGR

Query:  G
        G
Subjt:  G

XP_011648473.2 F-box protein At3g07870 [Cucumis sativus]1.6e-1732.42Show/hide
Query:  MEKLEMTRRRRKIMKGNWELLPHIHDLIFSKLYISNFPVCRLVCKSWNGLVLDYASFSSKLLLSNILLFSDFIPPRCSLSRWKTKIHCLDIDKLSLTTLM
        +E +E++ RR  I  G   L P I   IFSKL IS+ P CRLV  +WN LVLDYAS +    L N  L S       +      K+HC+++D   L+   
Subjt:  MEKLEMTRRRRKIMKGNWELLPHIHDLIFSKLYISNFPVCRLVCKSWNGLVLDYASFSSKLLLSNILLFSDFIPPRCSLSRWKTKIHCLDIDKLSLTTLM

Query:  DVSSSKD-----------------------------SPCECF-YDDDIFNPMTGEFFKLNGPVSEDDNFVFGFGFNPNTKQYKLFK-----------ANY
        D     +                             S C  + +   IFNPMT EF +++   + DD +++GFGF+P TKQYKLF+           ++ 
Subjt:  DVSSSKD-----------------------------SPCECF-YDDDIFNPMTGEFFKLNGPVSEDDNFVFGFGFNPNTKQYKLFK-----------ANY

Query:  LESSLTMEIFTIGRGGVGN
        +++  TME+ T GR G  +
Subjt:  LESSLTMEIFTIGRGGVGN

XP_011660339.1 putative F-box protein At1g32420 [Cucumis sativus]2.1e-1739.26Show/hide
Query:  IFSKLYISNFPVCRLVCKSWNGLVLDYASFSSKLLLSNILLFS-DFIPP-RCSLSRWKTKIHCLDIDKLSLTTLMDV------SSSKDS-----------
        IFSKL +SN P CR+VCK+WN L+LD+AS +SK L ++ +LF+ D + P  C  +     +HCL  D L L   +D+      SSS ++           
Subjt:  IFSKLYISNFPVCRLVCKSWNGLVLDYASFSSKLLLSNILLFS-DFIPP-RCSLSRWKTKIHCLDIDKLSLTTLMDV------SSSKDS-----------

Query:  ------------PCECFYDDDIFNPMTGEFFKLNGPVSEDDNFVFGFGFNPNTKQYKLFKANY
                    P E      IFNPMT EFF++  P  E   + +GFGF P TKQYKLF+ N+
Subjt:  ------------PCECFYDDDIFNPMTGEFFKLNGPVSEDDNFVFGFGFNPNTKQYKLFKANY

XP_038879760.1 uncharacterized protein LOC120071509 [Benincasa hispida]1.4e-2136.04Show/hide
Query:  KIMKGNWELLPHIHDLIFSKLYISNFPVCRLVCKSWNGLVLDYASFSSKLLLSNILLFSDFIPPRC-SLSRWKTKIHCLDIDKLSLTTLMDVSSSKDSP-
        KI+    EL   I + IF +L +SN   CR+VCK+WN L+LDY+S SSKLL ++ +LF+    P C S S +  K+HC  +D L + + M+   +K +  
Subjt:  KIMKGNWELLPHIHDLIFSKLYISNFPVCRLVCKSWNGLVLDYASFSSKLLLSNILLFSDFIPPRC-SLSRWKTKIHCLDIDKLSLTTLMDVSSSKDSP-

Query:  ---------------------------CECFYDDDIFNPMTGEFFKLNGPVSEDDNFVFGFGFNPNTKQYKLFKANYLES---SLTMEIFTIGRGGV
                                   C C     IFNPMT EFF++     + + +V+GFGF P TK YKLF+    +    S  ME+ T GRGG+
Subjt:  ---------------------------CECFYDDDIFNPMTGEFFKLNGPVSEDDNFVFGFGFNPNTKQYKLFKANYLES---SLTMEIFTIGRGGV

TrEMBL top hitse value%identityAlignment
A0A0A0LPC6 Uncharacterized protein2.5e-1632.59Show/hide
Query:  MEKLEMTRRRRKIMKGNWELLPHIHDLIFSKLYISNFPVCRLVCKSWNGLVLDYASFSSKLLLSNILLFSDFIPPRCSLSRWKTKIHCLDIDKLSLTTLM
        ME +EM  RR  I  G   L P I   IFSKL ISN P CR VCK+WN LVL YAS +    L+N  L S       +      K+HC+++D    +  +
Subjt:  MEKLEMTRRRRKIMKGNWELLPHIHDLIFSKLYISNFPVCRLVCKSWNGLVLDYASFSSKLLLSNILLFSDFIPPRCSLSRWKTKIHCLDIDKLSLTTLM

Query:  DVSSSKD---SPCECFYDD---------------------------DIFNPMTGEFFKLNGPVSEDDNFVFGFGFNPNTKQYKLFKANYL----------
        D     +   S    FY D                            IFNPMT EFF+++   + DD + +GFG +  +KQYKLF+ +            
Subjt:  DVSSSKD---SPCECFYDD---------------------------DIFNPMTGEFFKLNGPVSEDDNFVFGFGFNPNTKQYKLFKANYL----------

Query:  ------ESSLTMEIFTIGRGGVGN
              ++  TME+ T GR G  +
Subjt:  ------ESSLTMEIFTIGRGGVGN

A0A0A0LSE0 F-box domain-containing protein1.0e-1739.26Show/hide
Query:  IFSKLYISNFPVCRLVCKSWNGLVLDYASFSSKLLLSNILLFS-DFIPP-RCSLSRWKTKIHCLDIDKLSLTTLMDV------SSSKDS-----------
        IFSKL +SN P CR+VCK+WN L+LD+AS +SK L ++ +LF+ D + P  C  +     +HCL  D L L   +D+      SSS ++           
Subjt:  IFSKLYISNFPVCRLVCKSWNGLVLDYASFSSKLLLSNILLFS-DFIPP-RCSLSRWKTKIHCLDIDKLSLTTLMDV------SSSKDS-----------

Query:  ------------PCECFYDDDIFNPMTGEFFKLNGPVSEDDNFVFGFGFNPNTKQYKLFKANY
                    P E      IFNPMT EFF++  P  E   + +GFGF P TKQYKLF+ N+
Subjt:  ------------PCECFYDDDIFNPMTGEFFKLNGPVSEDDNFVFGFGFNPNTKQYKLFKANY

A0A0A0LUP7 F-box domain-containing protein1.1e-1631.98Show/hide
Query:  MEKLEMTRRRRKIMKGNWELLPHIHDLIFSKLYISNFPVCRLVCKSWNGLVLDYASFSSKLLLSNILLFSDFIPPRCSLSRWKTKIHCLDIDKLSLTTLM
        ME +EM  RR  I  G   L P I  +IFSKL ISN P CR VCK+WN LVL YAS +    L+N  L S       +      K+H +++D    +  +
Subjt:  MEKLEMTRRRRKIMKGNWELLPHIHDLIFSKLYISNFPVCRLVCKSWNGLVLDYASFSSKLLLSNILLFSDFIPPRCSLSRWKTKIHCLDIDKLSLTTLM

Query:  DVSSS------------------KDSPC----------ECFYDDDIFNPMTGEFFKLNGPVSEDDNFVFGFGFNPNTKQYKLFKANYL------------
        D+                        PC          +  +   IFNPMT EFF+++   + DD + +GFG +P TKQYKLF+ +              
Subjt:  DVSSS------------------KDSPC----------ECFYDDDIFNPMTGEFFKLNGPVSEDDNFVFGFGFNPNTKQYKLFKANYL------------

Query:  ----ESSLTMEIFTIGRGGVGN
            ++   ME+ T GR G  +
Subjt:  ----ESSLTMEIFTIGRGGVGN

A0A0A0LWG1 F-box domain-containing protein7.8e-1832.42Show/hide
Query:  MEKLEMTRRRRKIMKGNWELLPHIHDLIFSKLYISNFPVCRLVCKSWNGLVLDYASFSSKLLLSNILLFSDFIPPRCSLSRWKTKIHCLDIDKLSLTTLM
        +E +E++ RR  I  G   L P I   IFSKL IS+ P CRLV  +WN LVLDYAS +    L N  L S       +      K+HC+++D   L+   
Subjt:  MEKLEMTRRRRKIMKGNWELLPHIHDLIFSKLYISNFPVCRLVCKSWNGLVLDYASFSSKLLLSNILLFSDFIPPRCSLSRWKTKIHCLDIDKLSLTTLM

Query:  DVSSSKD-----------------------------SPCECF-YDDDIFNPMTGEFFKLNGPVSEDDNFVFGFGFNPNTKQYKLFK-----------ANY
        D     +                             S C  + +   IFNPMT EF +++   + DD +++GFGF+P TKQYKLF+           ++ 
Subjt:  DVSSSKD-----------------------------SPCECF-YDDDIFNPMTGEFFKLNGPVSEDDNFVFGFGFNPNTKQYKLFK-----------ANY

Query:  LESSLTMEIFTIGRGGVGN
        +++  TME+ T GR G  +
Subjt:  LESSLTMEIFTIGRGGVGN

A0A1S3CB99 F-box protein At3g07870-like7.5e-2139.3Show/hide
Query:  MEKLEMTRRRRKIMKGNWELLPHIHDLIFSKLYISNFPVCRLVCKSWNGLVLDYASFSSKLLLSNILL-----FSDFIPPRCSLSRWKTKIHCLDIDK--
        ME LE   ++R  M  N  L PHI   IFSKL ISN P CR+VCK+WN LVL+YAS +  L  + + L      S++IP + S      KIHC+DID   
Subjt:  MEKLEMTRRRRKIMKGNWELLPHIHDLIFSKLYISNFPVCRLVCKSWNGLVLDYASFSSKLLLSNILL-----FSDFIPPRCSLSRWKTKIHCLDIDK--

Query:  -----------LSLTTLMDVSSSKDSPCECFYD---DDIFNPMTGEFFKLNGPVSEDDNFVFGFGFNPNTKQYKLFKA------NYLESSLTMEIFTIGR
                    S  T+++  +     C+  +D   + I NPMT EF ++  P  E D    GFGF+P TKQYKLF+       N  +    MEIFT   
Subjt:  -----------LSLTTLMDVSSSKDSPCECFYD---DDIFNPMTGEFFKLNGPVSEDDNFVFGFGFNPNTKQYKLFKA------NYLESSLTMEIFTIGR

Query:  G
        G
Subjt:  G

SwissProt top hitse value%identityAlignment
Q9SFC7 F-box protein At3g078703.6e-0430.72Show/hide
Query:  GNWELLPH-IHDLIFSKLYISNFPVCRLVCKSWNGLVLDY---ASFSSKLLLSNILLFSD--------FIPPRCSLSRWKTKIHCLDIDKLSLTTLMDVS
        G  E LP  I   IFS+L IS+      VC+SW  ++  +   +S SS      +LL  D        F+       R KTK   L     S+     V 
Subjt:  GNWELLPH-IHDLIFSKLYISNFPVCRLVCKSWNGLVLDY---ASFSSKLLLSNILLFSD--------FIPPRCSLSRWKTKIHCLDIDKLSLTTLMDVS

Query:  SSKDSPC--ECFYDDD--IFNPMTGEFFKLNGPVSE--DDNFVFGFGFNPNTKQYKLFKANYLESS
        S     C  +  Y+D   ++NP T    +L    ++  D   VFGFGF+  TK+YK+ K  Y   S
Subjt:  SSKDSPC--ECFYDDD--IFNPMTGEFFKLNGPVSE--DDNFVFGFGFNPNTKQYKLFKANYLESS

Arabidopsis top hitse value%identityAlignment
AT3G07870.1 F-box and associated interaction domains-containing protein2.6e-0530.72Show/hide
Query:  GNWELLPH-IHDLIFSKLYISNFPVCRLVCKSWNGLVLDY---ASFSSKLLLSNILLFSD--------FIPPRCSLSRWKTKIHCLDIDKLSLTTLMDVS
        G  E LP  I   IFS+L IS+      VC+SW  ++  +   +S SS      +LL  D        F+       R KTK   L     S+     V 
Subjt:  GNWELLPH-IHDLIFSKLYISNFPVCRLVCKSWNGLVLDY---ASFSSKLLLSNILLFSD--------FIPPRCSLSRWKTKIHCLDIDKLSLTTLMDVS

Query:  SSKDSPC--ECFYDDD--IFNPMTGEFFKLNGPVSE--DDNFVFGFGFNPNTKQYKLFKANYLESS
        S     C  +  Y+D   ++NP T    +L    ++  D   VFGFGF+  TK+YK+ K  Y   S
Subjt:  SSKDSPC--ECFYDDD--IFNPMTGEFFKLNGPVSE--DDNFVFGFGFNPNTKQYKLFKANYLESS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAGTTGGAGATGACTAGGAGGAGGAGGAAGATTATGAAGGGCAATTGGGAGCTTCTGCCTCATATTCATGACCTAATTTTCTCCAAACTCTATATCTCCAATTT
TCCTGTCTGCAGGCTTGTCTGTAAATCTTGGAATGGTCTAGTTTTAGATTACGCTTCTTTTTCTTCTAAATTACTCCTTTCAAACATTCTCCTTTTCTCTGATTTCATTC
CTCCGAGATGTAGTCTTAGTCGTTGGAAGACCAAGATCCATTGTCTCGATATTGATAAGCTGAGTTTGACGACACTGATGGATGTCTCCTCTTCGAAAGATTCTCCATGT
GAGTGTTTCTATGATGATGACATATTTAATCCAATGACTGGGGAATTCTTCAAACTTAATGGACCTGTATCAGAAGATGATAATTTCGTATTCGGATTTGGTTTCAACCC
TAATACCAAGCAGTACAAATTGTTCAAAGCAAACTACCTAGAATCCAGTCTTACAATGGAGATTTTCACGATTGGTAGAGGTGGTGTTGGGAATTGGGTGTGCAACCAAA
GTCCCACATTGGCTAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAGTTGGAGATGACTAGGAGGAGGAGGAAGATTATGAAGGGCAATTGGGAGCTTCTGCCTCATATTCATGACCTAATTTTCTCCAAACTCTATATCTCCAATTT
TCCTGTCTGCAGGCTTGTCTGTAAATCTTGGAATGGTCTAGTTTTAGATTACGCTTCTTTTTCTTCTAAATTACTCCTTTCAAACATTCTCCTTTTCTCTGATTTCATTC
CTCCGAGATGTAGTCTTAGTCGTTGGAAGACCAAGATCCATTGTCTCGATATTGATAAGCTGAGTTTGACGACACTGATGGATGTCTCCTCTTCGAAAGATTCTCCATGT
GAGTGTTTCTATGATGATGACATATTTAATCCAATGACTGGGGAATTCTTCAAACTTAATGGACCTGTATCAGAAGATGATAATTTCGTATTCGGATTTGGTTTCAACCC
TAATACCAAGCAGTACAAATTGTTCAAAGCAAACTACCTAGAATCCAGTCTTACAATGGAGATTTTCACGATTGGTAGAGGTGGTGTTGGGAATTGGGTGTGCAACCAAA
GTCCCACATTGGCTAGATAA
Protein sequenceShow/hide protein sequence
MEKLEMTRRRRKIMKGNWELLPHIHDLIFSKLYISNFPVCRLVCKSWNGLVLDYASFSSKLLLSNILLFSDFIPPRCSLSRWKTKIHCLDIDKLSLTTLMDVSSSKDSPC
ECFYDDDIFNPMTGEFFKLNGPVSEDDNFVFGFGFNPNTKQYKLFKANYLESSLTMEIFTIGRGGVGNWVCNQSPTLAR