| GenBank top hits | e value | %identity | Alignment |
|---|
| GAU19483.1 hypothetical protein TSUD_77270 [Trifolium subterraneum] | 6.4e-132 | 45.42 | Show/hide |
Query: ESSLVVNPQYEVWVAVDQLLLGWLYNSMTPEVATQVIGVENAKDLWSTIQELFGVQSRAEEDFLRQTFQQTRKGNLKMAEYLRVMKNHADNLGLAGSPVT
+SS N + W A DQ LLGW+ NSMT E+ATQ++ E +K LW Q L G +R++ +L+ F RKG +KM +YL MKN D L LAG+PV+
Subjt: ESSLVVNPQYEVWVAVDQLLLGWLYNSMTPEVATQVIGVENAKDLWSTIQELFGVQSRAEEDFLRQTFQQTRKGNLKMAEYLRVMKNHADNLGLAGSPVT
Query: NRNLVSQVLLGLDEEFNAVVAMLQGRASVSWSELQAELLVFEKRLEIQNSHKSTVSFSHNATANMAVNRGSNSPKPSNPANGNGNRQGYYNGNARGGNGS
+L+ Q L GLD E+N VV L + ++SW +LQA+LL FE R+E N + + + NATAN+A NR + K SN + N+RG G
Subjt: NRNLVSQVLLGLDEEFNAVVAMLQGRASVSWSELQAELLVFEKRLEIQNSHKSTVSFSHNATANMAVNRGSNSPKPSNPANGNGNRQGYYNGNARGGNGS
Query: RGRGKGRGYNYSNNRPPCQVCGKGN--------------VNGNYHPGRGNGQSPNAFMATQQPATPETVADPSWYADSGASNHVTSNYENLSNPTEYGGN
RGRGK + + PCQVCG N N+ G S NAF+A+Q +V D WY DSGASNHVT E + TE+ G
Subjt: RGRGKGRGYNYSNNRPPCQVCGKGN--------------VNGNYHPGRGNGQSPNAFMATQQPATPETVADPSWYADSGASNHVTSNYENLSNPTEYGGN
Query: ERVTVGNGDKLSIKCVGSSILTDGIHILNLENVLCVPEIAKNLVSMSKLAQDNNVFVEFHGDFCLVKDKSSGQVVLKGTLKDGLYQLQDVNARVVSSVSS
+ VGNG+KL+I GSS L LNL ++L VP I KNL+S+SKLA DNN+ VEF + C VKDK +G+V+LKG LKDGLYQL S
Subjt: ERVTVGNGDKLSIKCVGSSILTDGIHILNLENVLCVPEIAKNLVSMSKLAQDNNVFVEFHGDFCLVKDKSSGQVVLKGTLKDGLYQLQDVNARVVSSVSS
Query: NRLNTSVNNGVKSAFVVSYVMPQVNMVESKNVWHRRLGHPSPKVLDMIVKGCNLQVKSNEVLSFCESCQFGKSHALAFPLSNNRAVHRFDLVHTDLWGPA
+ N S V K WHRRLGHP+ KVLD +++ C ++V ++ SFCE+CQ+GK H L F S++ A +LVHTD+WGPA
Subjt: NRLNTSVNNGVKSAFVVSYVMPQVNMVESKNVWHRRLGHPSPKVLDMIVKGCNLQVKSNEVLSFCESCQFGKSHALAFPLSNNRAVHRFDLVHTDLWGPA
Query: PVPSVEGFRYYVLFLDDNSRFTWLYPLKQKNDTLAAFEHFRTMVKTQFGCVIKALQSDNGGEHSRVHKLCQQLGIHSRFSYPYTSSQNGRAERKHRHLVE
P+ + GF+YYV F+DD SRFTW+YPLKQK++T+ AF F+ + + QF IK +Q D GGE+ V KL + GI R S PYTS QNGRAERKHRH+ E
Subjt: PVPSVEGFRYYVLFLDDNSRFTWLYPLKQKNDTLAAFEHFRTMVKTQFGCVIKALQSDNGGEHSRVHKLCQQLGIHSRFSYPYTSSQNGRAERKHRHLVE
Query: TGLTLLAQASMP
GLTLLAQA MP
Subjt: TGLTLLAQASMP
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| GAU51268.1 hypothetical protein TSUD_412550 [Trifolium subterraneum] | 1.1e-123 | 44.12 | Show/hide |
Query: ESSLVVNPQYEVWVAVDQLLLGWLYNSMTPEVATQVIGVENAKDLWSTIQELFGVQSRAEEDFLRQTFQQTRKGNLKMAEYLRVMKNHADNLGLAGSPVT
+ S VNP + W+A DQ LLGWL NSM ++ATQ++ E +K LW Q L G +++ +L+ F TRKG +KM EYL MKN +D L LAGSP++
Subjt: ESSLVVNPQYEVWVAVDQLLLGWLYNSMTPEVATQVIGVENAKDLWSTIQELFGVQSRAEEDFLRQTFQQTRKGNLKMAEYLRVMKNHADNLGLAGSPVT
Query: NRNLVSQVLLGLDEEFNAVVAMLQGRASVSWSELQAELLVFEKRLEIQNSHKSTVSFSHNATANMAVNRGSNSPKPSNPANGNGNRQGYYNGNARGGNGS
N +L+ Q L GLD E+N VV L + ++SW ++QA+LL FE RL+ N +FS T N + N + + N N GN + N RG G
Subjt: NRNLVSQVLLGLDEEFNAVVAMLQGRASVSWSELQAELLVFEKRLEIQNSHKSTVSFSHNATANMAVNRGSNSPKPSNPANGNGNRQGYYNGNARGGNGS
Query: RGRGKGRGYNYSNNRPPCQVC-GKGNV-------------NGNYHPGRGNGQSPNAFMATQQPATPETVADPSWYADSGASNHVTSNYENLSNPTEYGGN
GRGKGR SN + CQVC G G++ NY S +AF+ A+P D WY DSGA+NHVT + E+ G
Subjt: RGRGKGRGYNYSNNRPPCQVC-GKGNV-------------NGNYHPGRGNGQSPNAFMATQQPATPETVADPSWYADSGASNHVTSNYENLSNPTEYGGN
Query: ERVTVGNGDKLSIKCVGSSILTDGIHILNLENVLCVPEIAKNLVSMSKLAQDNNVFVEFHGDFCLVKDKSSGQVVLKGTLKDGLYQLQDVNARVVSSVSS
+ VGNG+KL I GS+ L + LNL +VL VP+I KNL+S+SKL DNN+ VEF + C VKDK +GQ +LKG LKDGLYQL + V SV
Subjt: ERVTVGNGDKLSIKCVGSSILTDGIHILNLENVLCVPEIAKNLVSMSKLAQDNNVFVEFHGDFCLVKDKSSGQVVLKGTLKDGLYQLQDVNARVVSSVSS
Query: NRLNTSVNNGVKSAFVVSYVMPQVNMVESKNVWHRRLGHPSPKVLDMIVKGCNLQVKSNEVLSFCESCQFGKSHALAFPLSNNRAVHRFDLVHTDLWGPA
K WHR+LGHP+ KVLD ++K CN+++ ++ SFCE+CQFGK H L F S++ L+H+D+WGPA
Subjt: NRLNTSVNNGVKSAFVVSYVMPQVNMVESKNVWHRRLGHPSPKVLDMIVKGCNLQVKSNEVLSFCESCQFGKSHALAFPLSNNRAVHRFDLVHTDLWGPA
Query: PVPSVEGFRYYVLFLDDNSRFTWLYPLKQKNDTLAAFEHFRTMVKTQFGCVIKALQSDNGGEHSRVHKLCQQLGIHSRFSYPYTSSQNGRAERKHRHLVE
P+ S GF+YYV F+DD SRFTW++PLKQK+DT+ AF F+ + + QF IK +Q D GGE+ V K+ + GI R S PYTS QNGRAERKHRH+ E
Subjt: PVPSVEGFRYYVLFLDDNSRFTWLYPLKQKNDTLAAFEHFRTMVKTQFGCVIKALQSDNGGEHSRVHKLCQQLGIHSRFSYPYTSSQNGRAERKHRHLVE
Query: TGLTLLAQASMP
GLTLLAQA MP
Subjt: TGLTLLAQASMP
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| PNX76291.1 gag/pol polyprotein - maize retrotransposon Hopscotch, partial [Trifolium pratense] | 7.1e-131 | 44.12 | Show/hide |
Query: ESSLVVNPQYEVWVAVDQLLLGWLYNSMTPEVATQVIGVENAKDLWSTIQELFGVQSRAEEDFLRQTFQQTRKGNLKMAEYLRVMKNHADNLGLAGSPVT
+SS NP++E W A DQ LLGWL NSMT +ATQ++ E + LW Q L G +R++ +L+ F TRKG +KM +YL MKN AD L LAG+P++
Subjt: ESSLVVNPQYEVWVAVDQLLLGWLYNSMTPEVATQVIGVENAKDLWSTIQELFGVQSRAEEDFLRQTFQQTRKGNLKMAEYLRVMKNHADNLGLAGSPVT
Query: NRNLVSQVLLGLDEEFNAVVAMLQGRASVSWSELQAELLVFEKRLEIQNSHKSTVSFSHNATANMAVNRGSNSPKPSNPANGNGNRQGYYNGNARGGNGS
+L+ Q L GLD E+N VV L + ++SW +LQA+LL FE R+E N S + + NATAN+A + ++ N G+ + N RG G
Subjt: NRNLVSQVLLGLDEEFNAVVAMLQGRASVSWSELQAELLVFEKRLEIQNSHKSTVSFSHNATANMAVNRGSNSPKPSNPANGNGNRQGYYNGNARGGNGS
Query: RGRGKGRGYNYSNNRPPCQVCGKGN--------------VNGNYHPGRGNGQSPNAFMATQQPATPETVADPSWYADSGASNHVTSNYENLSNPTEYGGN
RGRG+ + + CQVCG N N+ S NAF+A+Q ++ D WY DSGASNHVT + N +E+ G
Subjt: RGRGKGRGYNYSNNRPPCQVCGKGN--------------VNGNYHPGRGNGQSPNAFMATQQPATPETVADPSWYADSGASNHVTSNYENLSNPTEYGGN
Query: ERVTVGNGDKLSIKCVGSSILTDGIHILNLENVLCVPEIAKNLVSMSKLAQDNNVFVEFHGDFCLVKDKSSGQVVLKGTLKDGLYQLQDVNARVVSSVSS
+ VGNG+KL I GSS L LNL ++L VP+I KNL+S+SKLA DNN+ VEF + C VKDK +G+ +L+G LKDGLYQL + ++ S+
Subjt: ERVTVGNGDKLSIKCVGSSILTDGIHILNLENVLCVPEIAKNLVSMSKLAQDNNVFVEFHGDFCLVKDKSSGQVVLKGTLKDGLYQLQDVNARVVSSVSS
Query: NRLNTSVNNGVKSAFVVSYVMPQVNMVESKNVWHRRLGHPSPKVLDMIVKGCNLQVKSNEVLSFCESCQFGKSHALAFPLSNNRAVHRFDLVHTDLWGPA
K WHR+LGHP+ KVLD+++K CN+++ ++ SFCE+CQ+GK H L F S + A +LVHTD+WGPA
Subjt: NRLNTSVNNGVKSAFVVSYVMPQVNMVESKNVWHRRLGHPSPKVLDMIVKGCNLQVKSNEVLSFCESCQFGKSHALAFPLSNNRAVHRFDLVHTDLWGPA
Query: PVPSVEGFRYYVLFLDDNSRFTWLYPLKQKNDTLAAFEHFRTMVKTQFGCVIKALQSDNGGEHSRVHKLCQQLGIHSRFSYPYTSSQNGRAERKHRHLVE
P+ S GF+YYV F+DD +RFTW+YPLKQK+DT AF F+ MV+ QF IK +Q D GGE+ V K + GI R S PYTS QNGRAERKHRH+ E
Subjt: PVPSVEGFRYYVLFLDDNSRFTWLYPLKQKNDTLAAFEHFRTMVKTQFGCVIKALQSDNGGEHSRVHKLCQQLGIHSRFSYPYTSSQNGRAERKHRHLVE
Query: TGLTLLAQASMP
GLTLLAQA MP
Subjt: TGLTLLAQASMP
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| PNX94503.1 putative retrotransposon Ty1-copia subclass protein, partial [Trifolium pratense] | 3.4e-125 | 44.39 | Show/hide |
Query: VNPQYEVWVAVDQLLLGWLYNSMTPEVATQVIGVENAKDLWSTIQELFGVQSRAEEDFLRQTFQQTRKGNLKMAEYLRVMKNHADNLGLAGSPVTNRNLV
+NP Y+ W A DQ LLGWL NSMT ++ATQV+ E +K LW Q L G +R+ +L+ F T K +KM +YL MKN AD L LAGSP+++ +L+
Subjt: VNPQYEVWVAVDQLLLGWLYNSMTPEVATQVIGVENAKDLWSTIQELFGVQSRAEEDFLRQTFQQTRKGNLKMAEYLRVMKNHADNLGLAGSPVTNRNLV
Query: SQVLLGLDEEFNAVVAMLQGRASVSWSELQAELLVFEKRLEIQNSHKSTVSFSHNATANMAVNRGSNSPKPSNPANGNGNRQGYYNGNARGGNGSRGRGK
Q L GLD E+N VV L + ++SW + QA+LL FE RL+ N+ + + NA+AN A K + N G+R G+ N+RG G RGR +
Subjt: SQVLLGLDEEFNAVVAMLQGRASVSWSELQAELLVFEKRLEIQNSHKSTVSFSHNATANMAVNRGSNSPKPSNPANGNGNRQGYYNGNARGGNGSRGRGK
Query: GRGYNYSNNRPPCQVCGK-------------GNVNGNYHPGRGNGQSPNAFMATQQPATPETVADPSWYADSGASNHVTSNYENLSNPTEYGGNERVTVG
RP CQ+CGK + H G G S +AF+ A+P D WY DSGASNHVT L + E G + VG
Subjt: GRGYNYSNNRPPCQVCGK-------------GNVNGNYHPGRGNGQSPNAFMATQQPATPETVADPSWYADSGASNHVTSNYENLSNPTEYGGNERVTVG
Query: NGDKLSIKCVGSSILTDGIHILNLENVLCVPEIAKNLVSMSKLAQDNNVFVEFHGDFCLVKDKSSGQVVLKGTLKDGLYQLQDVNARVVSSVSSNRLNTS
NG+KL I GS+ L D +NL NVL VPEI KNL+S+SKL DNN VEF ++C VKDK +G+ +LKG LKDGLYQL S+N+
Subjt: NGDKLSIKCVGSSILTDGIHILNLENVLCVPEIAKNLVSMSKLAQDNNVFVEFHGDFCLVKDKSSGQVVLKGTLKDGLYQLQDVNARVVSSVSSNRLNTS
Query: VNNGVKSAFVVSYVMPQVNMVESKNVWHRRLGHPSPKVLDMIVKGCNLQVKSNEVLSFCESCQFGKSHALAFPLSNNRAVHRFDLVHTDLWGPAPVPSVE
N A+ + K +WHR+LGHP+ KVL+ ++K N+++ ++ +FCE+CQFGK H L F S++ A DL+HTD+WGPAP+ S
Subjt: VNNGVKSAFVVSYVMPQVNMVESKNVWHRRLGHPSPKVLDMIVKGCNLQVKSNEVLSFCESCQFGKSHALAFPLSNNRAVHRFDLVHTDLWGPAPVPSVE
Query: GFRYYVLFLDDNSRFTWLYPLKQKNDTLAAFEHFRTMVKTQFGCVIKALQSDNGGEHSRVHKLCQQLGIHSRFSYPYTSSQNGRAERKHRHLVETGLTLL
F+YYV FLDD SRFTW++PLKQK++T+ AF F+ +V+ QF IK ++ D GGE+ V K GI + S PYTS QNGRAERKHRH+ E GLTLL
Subjt: GFRYYVLFLDDNSRFTWLYPLKQKNDTLAAFEHFRTMVKTQFGCVIKALQSDNGGEHSRVHKLCQQLGIHSRFSYPYTSSQNGRAERKHRHLVETGLTLL
Query: AQASMP
AQA MP
Subjt: AQASMP
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| PNY01489.1 copia-like polyprotein, partial [Trifolium pratense] | 7.6e-125 | 45.14 | Show/hide |
Query: ESSLVVNPQYEVWVAVDQLLLGWLYNSMTPEVATQVIGVENAKDLWSTIQELFGVQSRAEEDFLRQTFQQTRKGNLKMAEYLRVMKNHADNLGLAGSPVT
+ S VNP ++ W+A DQ LLGWL NSM ++ATQ++ E +K LW Q L G +++ +L+ F TRKG +KM EYL MKN +D L L+GSP++
Subjt: ESSLVVNPQYEVWVAVDQLLLGWLYNSMTPEVATQVIGVENAKDLWSTIQELFGVQSRAEEDFLRQTFQQTRKGNLKMAEYLRVMKNHADNLGLAGSPVT
Query: NRNLVSQVLLGLDEEFNAVVAMLQGRASVSWSELQAELLVFEKRLEIQNSHKSTVSFSHNATANMAVNRGSNSPKPSNPANGNGNRQGYYNGNARGGNGS
N +L+ Q L GLD E+N VV L + ++SW ++QA+LL FE RL+ N +FS T N + N + + N + GN + N RG G
Subjt: NRNLVSQVLLGLDEEFNAVVAMLQGRASVSWSELQAELLVFEKRLEIQNSHKSTVSFSHNATANMAVNRGSNSPKPSNPANGNGNRQGYYNGNARGGNGS
Query: RGRGKGRGYNYSNNRPPCQVC---GKGNVNGNYHPGRGNGQSPNAFMATQQPATPETVADP------SWYADSGASNHVTSNYENLSNPTEYGGNERVTV
GRGKGR SN + CQVC G V+ +Y R + A +Q + VA P WY DSGASNHVT + E+ G + V
Subjt: RGRGKGRGYNYSNNRPPCQVC---GKGNVNGNYHPGRGNGQSPNAFMATQQPATPETVADP------SWYADSGASNHVTSNYENLSNPTEYGGNERVTV
Query: GNGDKLSIKCVGSSILTDGIHILNLENVLCVPEIAKNLVSMSKLAQDNNVFVEFHGDFCLVKDKSSGQVVLKGTLKDGLYQLQDVNARVVSSVSSNRLNT
GNG+KL I GS+ L + LNL +VL VP+I KNL+S+SKL DNN+FVEF + C VKDK +GQ +LKG LKDGLYQL DV S SN+
Subjt: GNGDKLSIKCVGSSILTDGIHILNLENVLCVPEIAKNLVSMSKLAQDNNVFVEFHGDFCLVKDKSSGQVVLKGTLKDGLYQLQDVNARVVSSVSSNRLNT
Query: SVNNGVKSAFVVSYVMPQVNMVESKNVWHRRLGHPSPKVLDMIVKGCNLQVKSNEVLSFCESCQFGKSHALAFPLSNNRAVHRFDLVHTDLWGPAPVPSV
P V M K WHR+LGHP+ KVL+ ++K CN+++ ++ SFCE+CQFGK H L F S++ L+H+D+WGPAP+ S
Subjt: SVNNGVKSAFVVSYVMPQVNMVESKNVWHRRLGHPSPKVLDMIVKGCNLQVKSNEVLSFCESCQFGKSHALAFPLSNNRAVHRFDLVHTDLWGPAPVPSV
Query: EGFRYYVLFLDDNSRFTWLYPLKQKNDTLAAFEHFRTMVKTQFGCVIKALQSDNGGEHSRVHKLCQQLGIHSRFSYPYTSSQNGRAERKHRHLVETGLTL
GF+YYV F+DD SRFTW++PLKQK+DT+ AF F+ + + QF IK +Q D GGE+ V K+ + GI R S PYTS QNGRAERKHRH+VE GLTL
Subjt: EGFRYYVLFLDDNSRFTWLYPLKQKNDTLAAFEHFRTMVKTQFGCVIKALQSDNGGEHSRVHKLCQQLGIHSRFSYPYTSSQNGRAERKHRHLVETGLTL
Query: LAQASMP
LAQA MP
Subjt: LAQASMP
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A2K3LCM1 Gag/pol polyprotein-maize retrotransposon Hopscotch (Fragment) | 3.4e-131 | 44.12 | Show/hide |
Query: ESSLVVNPQYEVWVAVDQLLLGWLYNSMTPEVATQVIGVENAKDLWSTIQELFGVQSRAEEDFLRQTFQQTRKGNLKMAEYLRVMKNHADNLGLAGSPVT
+SS NP++E W A DQ LLGWL NSMT +ATQ++ E + LW Q L G +R++ +L+ F TRKG +KM +YL MKN AD L LAG+P++
Subjt: ESSLVVNPQYEVWVAVDQLLLGWLYNSMTPEVATQVIGVENAKDLWSTIQELFGVQSRAEEDFLRQTFQQTRKGNLKMAEYLRVMKNHADNLGLAGSPVT
Query: NRNLVSQVLLGLDEEFNAVVAMLQGRASVSWSELQAELLVFEKRLEIQNSHKSTVSFSHNATANMAVNRGSNSPKPSNPANGNGNRQGYYNGNARGGNGS
+L+ Q L GLD E+N VV L + ++SW +LQA+LL FE R+E N S + + NATAN+A + ++ N G+ + N RG G
Subjt: NRNLVSQVLLGLDEEFNAVVAMLQGRASVSWSELQAELLVFEKRLEIQNSHKSTVSFSHNATANMAVNRGSNSPKPSNPANGNGNRQGYYNGNARGGNGS
Query: RGRGKGRGYNYSNNRPPCQVCGKGN--------------VNGNYHPGRGNGQSPNAFMATQQPATPETVADPSWYADSGASNHVTSNYENLSNPTEYGGN
RGRG+ + + CQVCG N N+ S NAF+A+Q ++ D WY DSGASNHVT + N +E+ G
Subjt: RGRGKGRGYNYSNNRPPCQVCGKGN--------------VNGNYHPGRGNGQSPNAFMATQQPATPETVADPSWYADSGASNHVTSNYENLSNPTEYGGN
Query: ERVTVGNGDKLSIKCVGSSILTDGIHILNLENVLCVPEIAKNLVSMSKLAQDNNVFVEFHGDFCLVKDKSSGQVVLKGTLKDGLYQLQDVNARVVSSVSS
+ VGNG+KL I GSS L LNL ++L VP+I KNL+S+SKLA DNN+ VEF + C VKDK +G+ +L+G LKDGLYQL + ++ S+
Subjt: ERVTVGNGDKLSIKCVGSSILTDGIHILNLENVLCVPEIAKNLVSMSKLAQDNNVFVEFHGDFCLVKDKSSGQVVLKGTLKDGLYQLQDVNARVVSSVSS
Query: NRLNTSVNNGVKSAFVVSYVMPQVNMVESKNVWHRRLGHPSPKVLDMIVKGCNLQVKSNEVLSFCESCQFGKSHALAFPLSNNRAVHRFDLVHTDLWGPA
K WHR+LGHP+ KVLD+++K CN+++ ++ SFCE+CQ+GK H L F S + A +LVHTD+WGPA
Subjt: NRLNTSVNNGVKSAFVVSYVMPQVNMVESKNVWHRRLGHPSPKVLDMIVKGCNLQVKSNEVLSFCESCQFGKSHALAFPLSNNRAVHRFDLVHTDLWGPA
Query: PVPSVEGFRYYVLFLDDNSRFTWLYPLKQKNDTLAAFEHFRTMVKTQFGCVIKALQSDNGGEHSRVHKLCQQLGIHSRFSYPYTSSQNGRAERKHRHLVE
P+ S GF+YYV F+DD +RFTW+YPLKQK+DT AF F+ MV+ QF IK +Q D GGE+ V K + GI R S PYTS QNGRAERKHRH+ E
Subjt: PVPSVEGFRYYVLFLDDNSRFTWLYPLKQKNDTLAAFEHFRTMVKTQFGCVIKALQSDNGGEHSRVHKLCQQLGIHSRFSYPYTSSQNGRAERKHRHLVE
Query: TGLTLLAQASMP
GLTLLAQA MP
Subjt: TGLTLLAQASMP
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| A0A2K3MUJ9 Putative retrotransposon Ty1-copia subclass protein (Fragment) | 1.7e-125 | 44.39 | Show/hide |
Query: VNPQYEVWVAVDQLLLGWLYNSMTPEVATQVIGVENAKDLWSTIQELFGVQSRAEEDFLRQTFQQTRKGNLKMAEYLRVMKNHADNLGLAGSPVTNRNLV
+NP Y+ W A DQ LLGWL NSMT ++ATQV+ E +K LW Q L G +R+ +L+ F T K +KM +YL MKN AD L LAGSP+++ +L+
Subjt: VNPQYEVWVAVDQLLLGWLYNSMTPEVATQVIGVENAKDLWSTIQELFGVQSRAEEDFLRQTFQQTRKGNLKMAEYLRVMKNHADNLGLAGSPVTNRNLV
Query: SQVLLGLDEEFNAVVAMLQGRASVSWSELQAELLVFEKRLEIQNSHKSTVSFSHNATANMAVNRGSNSPKPSNPANGNGNRQGYYNGNARGGNGSRGRGK
Q L GLD E+N VV L + ++SW + QA+LL FE RL+ N+ + + NA+AN A K + N G+R G+ N+RG G RGR +
Subjt: SQVLLGLDEEFNAVVAMLQGRASVSWSELQAELLVFEKRLEIQNSHKSTVSFSHNATANMAVNRGSNSPKPSNPANGNGNRQGYYNGNARGGNGSRGRGK
Query: GRGYNYSNNRPPCQVCGK-------------GNVNGNYHPGRGNGQSPNAFMATQQPATPETVADPSWYADSGASNHVTSNYENLSNPTEYGGNERVTVG
RP CQ+CGK + H G G S +AF+ A+P D WY DSGASNHVT L + E G + VG
Subjt: GRGYNYSNNRPPCQVCGK-------------GNVNGNYHPGRGNGQSPNAFMATQQPATPETVADPSWYADSGASNHVTSNYENLSNPTEYGGNERVTVG
Query: NGDKLSIKCVGSSILTDGIHILNLENVLCVPEIAKNLVSMSKLAQDNNVFVEFHGDFCLVKDKSSGQVVLKGTLKDGLYQLQDVNARVVSSVSSNRLNTS
NG+KL I GS+ L D +NL NVL VPEI KNL+S+SKL DNN VEF ++C VKDK +G+ +LKG LKDGLYQL S+N+
Subjt: NGDKLSIKCVGSSILTDGIHILNLENVLCVPEIAKNLVSMSKLAQDNNVFVEFHGDFCLVKDKSSGQVVLKGTLKDGLYQLQDVNARVVSSVSSNRLNTS
Query: VNNGVKSAFVVSYVMPQVNMVESKNVWHRRLGHPSPKVLDMIVKGCNLQVKSNEVLSFCESCQFGKSHALAFPLSNNRAVHRFDLVHTDLWGPAPVPSVE
N A+ + K +WHR+LGHP+ KVL+ ++K N+++ ++ +FCE+CQFGK H L F S++ A DL+HTD+WGPAP+ S
Subjt: VNNGVKSAFVVSYVMPQVNMVESKNVWHRRLGHPSPKVLDMIVKGCNLQVKSNEVLSFCESCQFGKSHALAFPLSNNRAVHRFDLVHTDLWGPAPVPSVE
Query: GFRYYVLFLDDNSRFTWLYPLKQKNDTLAAFEHFRTMVKTQFGCVIKALQSDNGGEHSRVHKLCQQLGIHSRFSYPYTSSQNGRAERKHRHLVETGLTLL
F+YYV FLDD SRFTW++PLKQK++T+ AF F+ +V+ QF IK ++ D GGE+ V K GI + S PYTS QNGRAERKHRH+ E GLTLL
Subjt: GFRYYVLFLDDNSRFTWLYPLKQKNDTLAAFEHFRTMVKTQFGCVIKALQSDNGGEHSRVHKLCQQLGIHSRFSYPYTSSQNGRAERKHRHLVETGLTLL
Query: AQASMP
AQA MP
Subjt: AQASMP
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| A0A2K3NEN7 Copia-like polyprotein (Fragment) | 3.7e-125 | 45.14 | Show/hide |
Query: ESSLVVNPQYEVWVAVDQLLLGWLYNSMTPEVATQVIGVENAKDLWSTIQELFGVQSRAEEDFLRQTFQQTRKGNLKMAEYLRVMKNHADNLGLAGSPVT
+ S VNP ++ W+A DQ LLGWL NSM ++ATQ++ E +K LW Q L G +++ +L+ F TRKG +KM EYL MKN +D L L+GSP++
Subjt: ESSLVVNPQYEVWVAVDQLLLGWLYNSMTPEVATQVIGVENAKDLWSTIQELFGVQSRAEEDFLRQTFQQTRKGNLKMAEYLRVMKNHADNLGLAGSPVT
Query: NRNLVSQVLLGLDEEFNAVVAMLQGRASVSWSELQAELLVFEKRLEIQNSHKSTVSFSHNATANMAVNRGSNSPKPSNPANGNGNRQGYYNGNARGGNGS
N +L+ Q L GLD E+N VV L + ++SW ++QA+LL FE RL+ N +FS T N + N + + N + GN + N RG G
Subjt: NRNLVSQVLLGLDEEFNAVVAMLQGRASVSWSELQAELLVFEKRLEIQNSHKSTVSFSHNATANMAVNRGSNSPKPSNPANGNGNRQGYYNGNARGGNGS
Query: RGRGKGRGYNYSNNRPPCQVC---GKGNVNGNYHPGRGNGQSPNAFMATQQPATPETVADP------SWYADSGASNHVTSNYENLSNPTEYGGNERVTV
GRGKGR SN + CQVC G V+ +Y R + A +Q + VA P WY DSGASNHVT + E+ G + V
Subjt: RGRGKGRGYNYSNNRPPCQVC---GKGNVNGNYHPGRGNGQSPNAFMATQQPATPETVADP------SWYADSGASNHVTSNYENLSNPTEYGGNERVTV
Query: GNGDKLSIKCVGSSILTDGIHILNLENVLCVPEIAKNLVSMSKLAQDNNVFVEFHGDFCLVKDKSSGQVVLKGTLKDGLYQLQDVNARVVSSVSSNRLNT
GNG+KL I GS+ L + LNL +VL VP+I KNL+S+SKL DNN+FVEF + C VKDK +GQ +LKG LKDGLYQL DV S SN+
Subjt: GNGDKLSIKCVGSSILTDGIHILNLENVLCVPEIAKNLVSMSKLAQDNNVFVEFHGDFCLVKDKSSGQVVLKGTLKDGLYQLQDVNARVVSSVSSNRLNT
Query: SVNNGVKSAFVVSYVMPQVNMVESKNVWHRRLGHPSPKVLDMIVKGCNLQVKSNEVLSFCESCQFGKSHALAFPLSNNRAVHRFDLVHTDLWGPAPVPSV
P V M K WHR+LGHP+ KVL+ ++K CN+++ ++ SFCE+CQFGK H L F S++ L+H+D+WGPAP+ S
Subjt: SVNNGVKSAFVVSYVMPQVNMVESKNVWHRRLGHPSPKVLDMIVKGCNLQVKSNEVLSFCESCQFGKSHALAFPLSNNRAVHRFDLVHTDLWGPAPVPSV
Query: EGFRYYVLFLDDNSRFTWLYPLKQKNDTLAAFEHFRTMVKTQFGCVIKALQSDNGGEHSRVHKLCQQLGIHSRFSYPYTSSQNGRAERKHRHLVETGLTL
GF+YYV F+DD SRFTW++PLKQK+DT+ AF F+ + + QF IK +Q D GGE+ V K+ + GI R S PYTS QNGRAERKHRH+VE GLTL
Subjt: EGFRYYVLFLDDNSRFTWLYPLKQKNDTLAAFEHFRTMVKTQFGCVIKALQSDNGGEHSRVHKLCQQLGIHSRFSYPYTSSQNGRAERKHRHLVETGLTL
Query: LAQASMP
LAQA MP
Subjt: LAQASMP
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| A0A2Z6MBG6 Integrase catalytic domain-containing protein | 3.1e-132 | 45.42 | Show/hide |
Query: ESSLVVNPQYEVWVAVDQLLLGWLYNSMTPEVATQVIGVENAKDLWSTIQELFGVQSRAEEDFLRQTFQQTRKGNLKMAEYLRVMKNHADNLGLAGSPVT
+SS N + W A DQ LLGW+ NSMT E+ATQ++ E +K LW Q L G +R++ +L+ F RKG +KM +YL MKN D L LAG+PV+
Subjt: ESSLVVNPQYEVWVAVDQLLLGWLYNSMTPEVATQVIGVENAKDLWSTIQELFGVQSRAEEDFLRQTFQQTRKGNLKMAEYLRVMKNHADNLGLAGSPVT
Query: NRNLVSQVLLGLDEEFNAVVAMLQGRASVSWSELQAELLVFEKRLEIQNSHKSTVSFSHNATANMAVNRGSNSPKPSNPANGNGNRQGYYNGNARGGNGS
+L+ Q L GLD E+N VV L + ++SW +LQA+LL FE R+E N + + + NATAN+A NR + K SN + N+RG G
Subjt: NRNLVSQVLLGLDEEFNAVVAMLQGRASVSWSELQAELLVFEKRLEIQNSHKSTVSFSHNATANMAVNRGSNSPKPSNPANGNGNRQGYYNGNARGGNGS
Query: RGRGKGRGYNYSNNRPPCQVCGKGN--------------VNGNYHPGRGNGQSPNAFMATQQPATPETVADPSWYADSGASNHVTSNYENLSNPTEYGGN
RGRGK + + PCQVCG N N+ G S NAF+A+Q +V D WY DSGASNHVT E + TE+ G
Subjt: RGRGKGRGYNYSNNRPPCQVCGKGN--------------VNGNYHPGRGNGQSPNAFMATQQPATPETVADPSWYADSGASNHVTSNYENLSNPTEYGGN
Query: ERVTVGNGDKLSIKCVGSSILTDGIHILNLENVLCVPEIAKNLVSMSKLAQDNNVFVEFHGDFCLVKDKSSGQVVLKGTLKDGLYQLQDVNARVVSSVSS
+ VGNG+KL+I GSS L LNL ++L VP I KNL+S+SKLA DNN+ VEF + C VKDK +G+V+LKG LKDGLYQL S
Subjt: ERVTVGNGDKLSIKCVGSSILTDGIHILNLENVLCVPEIAKNLVSMSKLAQDNNVFVEFHGDFCLVKDKSSGQVVLKGTLKDGLYQLQDVNARVVSSVSS
Query: NRLNTSVNNGVKSAFVVSYVMPQVNMVESKNVWHRRLGHPSPKVLDMIVKGCNLQVKSNEVLSFCESCQFGKSHALAFPLSNNRAVHRFDLVHTDLWGPA
+ N S V K WHRRLGHP+ KVLD +++ C ++V ++ SFCE+CQ+GK H L F S++ A +LVHTD+WGPA
Subjt: NRLNTSVNNGVKSAFVVSYVMPQVNMVESKNVWHRRLGHPSPKVLDMIVKGCNLQVKSNEVLSFCESCQFGKSHALAFPLSNNRAVHRFDLVHTDLWGPA
Query: PVPSVEGFRYYVLFLDDNSRFTWLYPLKQKNDTLAAFEHFRTMVKTQFGCVIKALQSDNGGEHSRVHKLCQQLGIHSRFSYPYTSSQNGRAERKHRHLVE
P+ + GF+YYV F+DD SRFTW+YPLKQK++T+ AF F+ + + QF IK +Q D GGE+ V KL + GI R S PYTS QNGRAERKHRH+ E
Subjt: PVPSVEGFRYYVLFLDDNSRFTWLYPLKQKNDTLAAFEHFRTMVKTQFGCVIKALQSDNGGEHSRVHKLCQQLGIHSRFSYPYTSSQNGRAERKHRHLVE
Query: TGLTLLAQASMP
GLTLLAQA MP
Subjt: TGLTLLAQASMP
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| A0A2Z6P4D5 Integrase catalytic domain-containing protein | 5.3e-124 | 44.12 | Show/hide |
Query: ESSLVVNPQYEVWVAVDQLLLGWLYNSMTPEVATQVIGVENAKDLWSTIQELFGVQSRAEEDFLRQTFQQTRKGNLKMAEYLRVMKNHADNLGLAGSPVT
+ S VNP + W+A DQ LLGWL NSM ++ATQ++ E +K LW Q L G +++ +L+ F TRKG +KM EYL MKN +D L LAGSP++
Subjt: ESSLVVNPQYEVWVAVDQLLLGWLYNSMTPEVATQVIGVENAKDLWSTIQELFGVQSRAEEDFLRQTFQQTRKGNLKMAEYLRVMKNHADNLGLAGSPVT
Query: NRNLVSQVLLGLDEEFNAVVAMLQGRASVSWSELQAELLVFEKRLEIQNSHKSTVSFSHNATANMAVNRGSNSPKPSNPANGNGNRQGYYNGNARGGNGS
N +L+ Q L GLD E+N VV L + ++SW ++QA+LL FE RL+ N +FS T N + N + + N N GN + N RG G
Subjt: NRNLVSQVLLGLDEEFNAVVAMLQGRASVSWSELQAELLVFEKRLEIQNSHKSTVSFSHNATANMAVNRGSNSPKPSNPANGNGNRQGYYNGNARGGNGS
Query: RGRGKGRGYNYSNNRPPCQVC-GKGNV-------------NGNYHPGRGNGQSPNAFMATQQPATPETVADPSWYADSGASNHVTSNYENLSNPTEYGGN
GRGKGR SN + CQVC G G++ NY S +AF+ A+P D WY DSGA+NHVT + E+ G
Subjt: RGRGKGRGYNYSNNRPPCQVC-GKGNV-------------NGNYHPGRGNGQSPNAFMATQQPATPETVADPSWYADSGASNHVTSNYENLSNPTEYGGN
Query: ERVTVGNGDKLSIKCVGSSILTDGIHILNLENVLCVPEIAKNLVSMSKLAQDNNVFVEFHGDFCLVKDKSSGQVVLKGTLKDGLYQLQDVNARVVSSVSS
+ VGNG+KL I GS+ L + LNL +VL VP+I KNL+S+SKL DNN+ VEF + C VKDK +GQ +LKG LKDGLYQL + V SV
Subjt: ERVTVGNGDKLSIKCVGSSILTDGIHILNLENVLCVPEIAKNLVSMSKLAQDNNVFVEFHGDFCLVKDKSSGQVVLKGTLKDGLYQLQDVNARVVSSVSS
Query: NRLNTSVNNGVKSAFVVSYVMPQVNMVESKNVWHRRLGHPSPKVLDMIVKGCNLQVKSNEVLSFCESCQFGKSHALAFPLSNNRAVHRFDLVHTDLWGPA
K WHR+LGHP+ KVLD ++K CN+++ ++ SFCE+CQFGK H L F S++ L+H+D+WGPA
Subjt: NRLNTSVNNGVKSAFVVSYVMPQVNMVESKNVWHRRLGHPSPKVLDMIVKGCNLQVKSNEVLSFCESCQFGKSHALAFPLSNNRAVHRFDLVHTDLWGPA
Query: PVPSVEGFRYYVLFLDDNSRFTWLYPLKQKNDTLAAFEHFRTMVKTQFGCVIKALQSDNGGEHSRVHKLCQQLGIHSRFSYPYTSSQNGRAERKHRHLVE
P+ S GF+YYV F+DD SRFTW++PLKQK+DT+ AF F+ + + QF IK +Q D GGE+ V K+ + GI R S PYTS QNGRAERKHRH+ E
Subjt: PVPSVEGFRYYVLFLDDNSRFTWLYPLKQKNDTLAAFEHFRTMVKTQFGCVIKALQSDNGGEHSRVHKLCQQLGIHSRFSYPYTSSQNGRAERKHRHLVE
Query: TGLTLLAQASMP
GLTLLAQA MP
Subjt: TGLTLLAQASMP
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| SwissProt top hits | e value | %identity | Alignment |
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| P04146 Copia protein | 7.9e-16 | 21.03 | Show/hide |
Query: AKDLWSTIQELFGVQSRAEEDFLRQTFQQTR-KGNLKMAEYLRVMKNHADNLGLAGSPVTNRNLVSQVLLGLDEEFNAVVAMLQGRASVSWSELQAELLV
A+ + + ++ +S A + LR+ + + + + + L AG+ + + +S +L+ L ++ ++ ++ + + + + +
Subjt: AKDLWSTIQELFGVQSRAEEDFLRQTFQQTR-KGNLKMAEYLRVMKNHADNLGLAGSPVTNRNLVSQVLLGLDEEFNAVVAMLQGRASVSWSELQAELLV
Query: FEKRLEIQNSHKSTVSFSHNATANMAVNRGSNSPKPSNPANGNGNRQGYYNGNARGGNGSRGRGKGRGYNYSNNRPPCQVCGK-GNVNGN-YHPGR--GN
++ ++I+N H T N V+ +N+ K + N + + GN S + C CG+ G++ + +H R N
Subjt: FEKRLEIQNSHKSTVSFSHNATANMAVNRGSNSPKPSNPANGNGNRQGYYNGNARGGNGSRGRGKGRGYNYSNNRPPCQVCGK-GNVNGN-YHPGR--GN
Query: GQSPN------------AFMATQQPATPETVADPSWYADSGASNHVTSNYENLSNPTEYGGNERVTVGNGDKLSIKCVGSSILTDGIHILNLENVLCVPE
N AFM + T + + + DSGAS+H+ ++ ++ E ++ V + + H + LE+VL E
Subjt: GQSPN------------AFMATQQPATPETVADPSWYADSGASNHVTSNYENLSNPTEYGGNERVTVGNGDKLSIKCVGSSILTDGIHILNLENVLCVPE
Query: IAKNLVSMSKLAQDNNVFVEFHGDFCLVKDKSSGQVVLKGTLKDGLYQLQDVNARVVSSVSSNRLNTSVNNG-VKSAFVVSYVMPQVNMVESKN--VWHR
A NL+S+ +L Q+ + +EF DKS ++S N L N+G + + V+++ +N N +WH
Subjt: IAKNLVSMSKLAQDNNVFVEFHGDFCLVKDKSSGQVVLKGTLKDGLYQLQDVNARVVSSVSSNRLNTSVNNG-VKSAFVVSYVMPQVNMVESKN--VWHR
Query: RLGHPSP-KVLDMIVKG--CNLQVKSNEVLS--FCESCQFGKSHALAF-PLSNNRAVHR-FDLVHTDLWGPAPVPSVEGFRYYVLFLDDNSRFTWLYPLK
R GH S K+L++ K + + +N LS CE C GK L F L + + R +VH+D+ GP +++ Y+V+F+D + + Y +K
Subjt: RLGHPSP-KVLDMIVKG--CNLQVKSNEVLS--FCESCQFGKSHALAF-PLSNNRAVHR-FDLVHTDLWGPAPVPSVEGFRYYVLFLDDNSRFTWLYPLK
Query: QKNDTLAAFEHFRTMVKTQFGCVIKALQSDNGGEH--SRVHKLCQQLGIHSRFSYPYTSSQNGRAERKHRHLVETGLTLLAQASM
K+D + F+ F + F + L DNG E+ + + + C + GI + P+T NG +ER R + E T+++ A +
Subjt: QKNDTLAAFEHFRTMVKTQFGCVIKALQSDNGGEH--SRVHKLCQQLGIHSRFSYPYTSSQNGRAERKHRHLVETGLTLLAQASM
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 5.3e-36 | 23.79 | Show/hide |
Query: DVSSRPESSLVVNPQYEVWVAVDQLLLGWLYNSMTPEVATQVIGVENAKDLWSTIQELFGVQSRAEEDFL-RQTFQQTRKGNLKMAEYLRVMKNHADNLG
DV S+ ++ + E W +D+ + ++ +V +I + A+ +W+ ++ L+ ++ + +L +Q + +L V L
Subjt: DVSSRPESSLVVNPQYEVWVAVDQLLLGWLYNSMTPEVATQVIGVENAKDLWSTIQELFGVQSRAEEDFL-RQTFQQTRKGNLKMAEYLRVMKNHADNLG
Query: LAGSPVTNRNLVSQVLLGLDEEF-NAVVAMLQGRASVSWSELQAELLVFEK-RLEIQNSHKSTVSFSHNATANMAVNRGSNSPKPSNPANGNGNRQGYYN
G + + +L L + N +L G+ ++ ++ + LL+ EK R + +N ++ ++ RG + + SN Y
Subjt: LAGSPVTNRNLVSQVLLGLDEEF-NAVVAMLQGRASVSWSELQAELLVFEK-RLEIQNSHKSTVSFSHNATANMAVNRGSNSPKPSNPANGNGNRQGYYN
Query: GNARGGNGSRGRGKGRGYNYSNNRP-------PCQVCGKGNVNGNYHPGR-----GNGQSPNAFMATQQPATPETVADPSWYADSGASNHVTSNYENLSN
ARG + +R + + R Y+ N+P P GKG +G + N + F+ ++ + + W D+ AS+H T +L
Subjt: GNARGGNGSRGRGKGRGYNYSNNRP-------PCQVCGKGNVNGNYHPGR-----GNGQSPNAFMATQQPATPETVADPSWYADSGASNHVTSNYENLSN
Query: PTEYGGNERVTVGNGDKLSIKCVGSSILTDGIH-ILNLENVLCVPEIAKNLVSMSKLAQDNNVFVEFHGDFCLVKDKSSGQVVLKGTLKDGLYQLQDVNA
G V +GN I +G + + L L++V VP++ NL+S L +D + + L K V+ KG + LY
Subjt: PTEYGGNERVTVGNGDKLSIKCVGSSILTDGIH-ILNLENVLCVPEIAKNLVSMSKLAQDNNVFVEFHGDFCLVKDKSSGQVVLKGTLKDGLYQLQDVNA
Query: RVVSSVSSNRLNTSVNNGVKSAFVVSYVMPQVNMVESKNVWHRRLGHPSPKVLDMIVKGCNLQVKSNEVLSFCESCQFGKSHALAFPLSNNRAVHRFDLV
R + + LN + + S ++WH+R+GH S K L ++ K + + C+ C FGK H ++F S+ R ++ DLV
Subjt: RVVSSVSSNRLNTSVNNGVKSAFVVSYVMPQVNMVESKNVWHRRLGHPSPKVLDMIVKGCNLQVKSNEVLSFCESCQFGKSHALAFPLSNNRAVHRFDLV
Query: HTDLWGPAPVPSVEGFRYYVLFLDDNSRFTWLYPLKQKNDTLAAFEHFRTMVKTQFGCVIKALQSDNGGEHS--RVHKLCQQLGIHSRFSYPYTSSQNGR
++D+ GP + S+ G +Y+V F+DD SR W+Y LK K+ F+ F +V+ + G +K L+SDNGGE++ + C GI + P T NG
Subjt: HTDLWGPAPVPSVEGFRYYVLFLDDNSRFTWLYPLKQKNDTLAAFEHFRTMVKTQFGCVIKALQSDNGGEHS--RVHKLCQQLGIHSRFSYPYTSSQNGR
Query: AERKHRHLVETGLTLLAQASMP
AER +R +VE ++L A +P
Subjt: AERKHRHLVETGLTLLAQASMP
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| Q03494 Transposon Ty2-DR2 Gag-Pol polyprotein | 1.6e-13 | 23.84 | Show/hide |
Query: VTNRNLVSQVLLGLDEEFNAVVAMLQGRASVSWSELQAELLVFEKRLEIQNSHKSTVSFSHNATANMAVNRGSNSPKPSNPANGNGNRQGYYNGNARGGN
V++R +L GL +F + + + ++ S+L AE+ + +I N +K + H+ N++ SP N N + Y+ N+
Subjt: VTNRNLVSQVLLGLDEEFNAVVAMLQGRASVSWSELQAELLVFEKRLEIQNSHKSTVSFSHNATANMAVNRGSNSPKPSNPANGNGNRQGYYNGNARGGN
Query: GSRGRGKGRGYNYSNNRPPCQVCGKGNVNGNYHPGRGN---GQSPNAFMATQQPATPETVADPSWYADSGAS----------NHVTSNYE-NLSN-----
++ +S R + V+ Y GQ T+ + + + D DSGAS +H T N E N+ +
Subjt: GSRGRGKGRGYNYSNNRPPCQVCGKGNVNGNYHPGRGN---GQSPNAFMATQQPATPETVADPSWYADSGAS----------NHVTSNYE-NLSN-----
Query: -PTEYGGNERVTVGNGDKLSIKCVGSSILTDGIHILNLENVLCVPEIAKNLVSMSKLAQDNNVFVEFHGDFCLVKD--KSSGQVVLKGTLKDGLYQLQDV
P GN NG K SIK L P IA +L+S+S+LA N C ++ + S VL +K G +
Subjt: -PTEYGGNERVTVGNGDKLSIKCVGSSILTDGIHILNLENVLCVPEIAKNLVSMSKLAQDNNVFVEFHGDFCLVKD--KSSGQVVLKGTLKDGLYQLQDV
Query: NARVVSSVSSNRLNTSVNNGVKSAFVVSYVMPQVNMVESKNVWHRRLGHPS-PKVLDMIVKGCNLQVK------SNEVLSFCESCQFGKS----HALAFP
+ S +S ++NN KS V Y P + HR LGH + + + K +K SN C C GKS H
Subjt: NARVVSSVSSNRLNTSVNNGVKSAFVVSYVMPQVNMVESKNVWHRRLGHPS-PKVLDMIVKGCNLQVK------SNEVLSFCESCQFGKS----HALAFP
Query: LSNNRAVHRFDLVHTDLWGPAPVPSVEGFRYYVLFLDDNSRFTWLYPL--KQKNDTLAAFEHFRTMVKTQFGCVIKALQSDNGGEHSR--VHKLCQQLGI
L + F +HTD++GP Y++ F D+ +RF W+YPL +++ L F +K QF + +Q D G E++ +HK GI
Subjt: LSNNRAVHRFDLVHTDLWGPAPVPSVEGFRYYVLFLDDNSRFTWLYPL--KQKNDTLAAFEHFRTMVKTQFGCVIKALQSDNGGEHSR--VHKLCQQLGI
Query: HSRFSYPYTSSQNGRAERKHRHLVETGLTLLAQASMP
+ ++ S +G AER +R L+ TLL + +P
Subjt: HSRFSYPYTSSQNGRAERKHRHLVETGLTLLAQASMP
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 1.2e-69 | 29.76 | Show/hide |
Query: DQLVAHSAS---SNVSKIQKLPSTMTNVFSNTTNAMAAGATMFSSPPLNQLLNQITSIKLDPAEASSSRATANGDVSSRPESSLVVNPQYEVWVAVDQLL
++LV ++ S N+S + KL ST ++S +A +F L L+ T++ AT D + R VNP Y W D+L+
Subjt: DQLVAHSAS---SNVSKIQKLPSTMTNVFSNTTNAMAAGATMFSSPPLNQLLNQITSIKLDPAEASSSRATANGDVSSRPESSLVVNPQYEVWVAVDQLL
Query: LGWLYNSMTPEVATQVIGVENAKDLWSTIQELFGVQSRAEEDFLRQTFQQTRKGNLKMAEYLRVMKNHADNLGLAGSPVTNRNLVSQVLLGLDEEFNAVV
+ +++ V V A +W T+++++ S LR +Q KG + +Y++ + D L L G P+ + V +VL L EE+ V+
Subjt: LGWLYNSMTPEVATQVIGVENAKDLWSTIQELFGVQSRAEEDFLRQTFQQTRKGNLKMAEYLRVMKNHADNLGLAGSPVTNRNLVSQVLLGLDEEFNAVV
Query: AMLQGR-ASVSWSELQAELLVFEKRLEIQNSHKSTVSFSHNATANMAVNRGSNSPKPSNPANGNGNRQGYYNGNARGGNGSRGRGKGRGYNYSNNRP---
+ + + +E+ LL E ++ + S + + + NA ++ +N N NGNR Y+ N + ++ +NN+
Subjt: AMLQGR-ASVSWSELQAELLVFEKRLEIQNSHKSTVSFSHNATANMAVNRGSNSPKPSNPANGNGNRQGYYNGNARGGNGSRGRGKGRGYNYSNNRP---
Query: --PCQVCGKGNVNGNYHPGRGNGQSPNAFMATQQPATPETVADP-------------SWYADSGASNHVTSNYENLSNPTEYGGNERVTVGNGDKLSIKC
CQ+CG V G+ Q + + +QQP +P T P +W DSGA++H+TS++ NLS Y G + V V +G + I
Subjt: --PCQVCGKGNVNGNYHPGRGNGQSPNAFMATQQPATPETVADP-------------SWYADSGASNHVTSNYENLSNPTEYGGNERVTVGNGDKLSIKC
Query: VGSSILTDGIHILNLENVLCVPEIAKNLVSMSKLAQDNNVFVEFHGDFCLVKDKSSGQVVLKGTLKDGLYQLQDVNARVVSSVSSNRLNTSVNNGVKSAF
GS+ L+ LNL N+L VP I KNL+S+ +L N V VEF VKD ++G +L+G KD LY+ +++ VS +S
Subjt: VGSSILTDGIHILNLENVLCVPEIAKNLVSMSKLAQDNNVFVEFHGDFCLVKDKSSGQVVLKGTLKDGLYQLQDVNARVVSSVSSNRLNTSVNNGVKSAF
Query: VVSYVMPQVNMVESKNVWHRRLGHPSPKVLDMIVKGCNLQV--KSNEVLSFCESCQFGKSHALAFPLSNNRAVHRFDLVHTDLWGPAPVPSVEGFRYYVL
P S WH RLGHP+P +L+ ++ +L V S++ LS C C KS+ + F S + + +++D+W +P+ S + +RYYV+
Subjt: VVSYVMPQVNMVESKNVWHRRLGHPSPKVLDMIVKGCNLQV--KSNEVLSFCESCQFGKSHALAFPLSNNRAVHRFDLVHTDLWGPAPVPSVEGFRYYVL
Query: FLDDNSRFTWLYPLKQKNDTLAAFEHFRTMVKTQFGCVIKALQSDNGGEHSRVHKLCQQLGIHSRFSYPYTSSQNGRAERKHRHLVETGLTLLAQASMP
F+D +R+TWLYPLKQK+ F F+ +++ +F I SDNGGE + + Q GI S P+T NG +ERKHRH+VETGLTLL+ AS+P
Subjt: FLDDNSRFTWLYPLKQKNDTLAAFEHFRTMVKTQFGCVIKALQSDNGGEHSRVHKLCQQLGIHSRFSYPYTSSQNGRAERKHRHLVETGLTLLAQASMP
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 2.5e-62 | 30.72 | Show/hide |
Query: VNPQYEVWVAVDQLLLGWLYNSMTPEVATQVIGVENAKDLWSTIQELFGVQSRAEEDFLRQTFQQTRKGNLKMAEYLRVMKNHADNLGLAGSPVTNRNLV
VNP Y W D+L+ + +++ V V A +W T+++++ S LR D L L G P+ + V
Subjt: VNPQYEVWVAVDQLLLGWLYNSMTPEVATQVIGVENAKDLWSTIQELFGVQSRAEEDFLRQTFQQTRKGNLKMAEYLRVMKNHADNLGLAGSPVTNRNLV
Query: SQVLLGLDEEFNAVVAMLQGR-ASVSWSELQAELLVFEKRLEIQNSHKSTVSFSHNATANMAVNRGSNSPKPSNPANGNGNRQGYYNGNARGGNGSRGRG
+VL L +++ V+ + + S +E+ L+ E +L NS + TAN+ +R +N+ + N N N YN N N +
Subjt: SQVLLGLDEEFNAVVAMLQGR-ASVSWSELQAELLVFEKRLEIQNSHKSTVSFSHNATANMAVNRGSNSPKPSNPANGNGNRQGYYNGNARGGNGSRGRG
Query: KGRGYNYSNNRPP------CQVCGKGNVNGNYHPGRGNGQSPNAFMATQQPATP------ETVADP----SWYADSGASNHVTSNYENLSNPTEYGGNER
G + S+NR P CQ+C + P QS + P TP V P +W DSGA++H+TS++ NLS Y G +
Subjt: KGRGYNYSNNRPP------CQVCGKGNVNGNYHPGRGNGQSPNAFMATQQPATP------ETVADP----SWYADSGASNHVTSNYENLSNPTEYGGNER
Query: VTVGNGDKLSIKCVGSSILTDGIHILNLENVLCVPEIAKNLVSMSKLAQDNNVFVEFHGDFCLVKDKSSGQVVLKGTLKDGLYQLQDVNARVVSSVSSNR
V + +G + I GS+ L L+L VL VP I KNL+S+ +L N V VEF VKD ++G +L+G KD LY+ +++ VS +S
Subjt: VTVGNGDKLSIKCVGSSILTDGIHILNLENVLCVPEIAKNLVSMSKLAQDNNVFVEFHGDFCLVKDKSSGQVVLKGTLKDGLYQLQDVNARVVSSVSSNR
Query: LNTSVNNGVKSAFVVSYVMPQVNMVESKNVWHRRLGHPSPKVLDMIVKGCNLQV--KSNEVLSFCESCQFGKSHALAFPLSNNRAVHRFDLVHTDLWGPA
P S WH RLGHPS +L+ ++ +L V S+++LS C C KSH + F S + + +++D+W +
Subjt: LNTSVNNGVKSAFVVSYVMPQVNMVESKNVWHRRLGHPSPKVLDMIVKGCNLQV--KSNEVLSFCESCQFGKSHALAFPLSNNRAVHRFDLVHTDLWGPA
Query: PVPSVEGFRYYVLFLDDNSRFTWLYPLKQKNDTLAAFEHFRTMVKTQFGCVIKALQSDNGGEHSRVHKLCQQLGIHSRFSYPYTSSQNGRAERKHRHLVE
P+ S++ +RYYV+F+D +R+TWLYPLKQK+ F F+++V+ +F I L SDNGGE + Q GI S P+T NG +ERKHRH+VE
Subjt: PVPSVEGFRYYVLFLDDNSRFTWLYPLKQKNDTLAAFEHFRTMVKTQFGCVIKALQSDNGGEHSRVHKLCQQLGIHSRFSYPYTSSQNGRAERKHRHLVE
Query: TGLTLLAQASMP
GLTLL+ AS+P
Subjt: TGLTLLAQASMP
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| Arabidopsis top hits | e value | %identity | Alignment |
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| AT1G34070.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162) | 4.0e-07 | 28.45 | Show/hide |
Query: DVSSRPESSLVVNPQYEV-WVAVDQLLLGWLYNSMTP-EVATQVIGVENAKDLWSTIQELFGVQSRAEEDFLRQTFQQTRKGNLKMAEYLRVMKNHADNL
DV + +L+ +V W D ++ LY ++TP + + ++D+W I+ F A L + G++++A+Y R MK AD+L
Subjt: DVSSRPESSLVVNPQYEV-WVAVDQLLLGWLYNSMTP-EVATQVIGVENAKDLWSTIQELFGVQSRAEEDFLRQTFQQTRKGNLKMAEYLRVMKNHADNL
Query: GLAGSPVTNRNLVSQVLLGLDEEFNAVVAMLQGRASVSWSELQAELLVFEKRLEIQNSHKSTVSFSHNATANMAVNRGSNSPKPSNPANGNGNRQGYYNG
PVT+RNLV VL GL+ +F+ ++ +++ R + A +L E+ + + H++++ V S +P +N GN+ G Y G
Subjt: GLAGSPVTNRNLVSQVLLGLDEEFNAVVAMLQGRASVSWSELQAELLVFEKRLEIQNSHKSTVSFSHNATANMAVNRGSNSPKPSNPANGNGNRQGYYNG
Query: NARGGNGSRGRGKGRGYNYSN-------NRPP
RG N RGRG GR ++Y N NRPP
Subjt: NARGGNGSRGRGKGRGYNYSN-------NRPP
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| AT5G48050.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162) | 1.1e-07 | 27.21 | Show/hide |
Query: WVAVDQLLLGWLYNSMTPEVATQVIGVE-NAKDLWSTIQELFGVQSRAEEDFLRQTFQQTRKGNLKMAEYLRVMKNHADNLGLAGSPVTNRNLVSQVLLG
W D L+ W+Y ++T + +I V A+DLW +++ LF A + T +L + EY + +K+ +D L SP+++R LV +L G
Subjt: WVAVDQLLLGWLYNSMTPEVATQVIGVE-NAKDLWSTIQELFGVQSRAEEDFLRQTFQQTRKGNLKMAEYLRVMKNHADNLGLAGSPVTNRNLVSQVLLG
Query: LDEEFNAVVAMLQGRASV-SWSELQAELLVFEKRLEIQNSHKSTVSFSHNATANMAVNRGSNSPKPSN-----PANGNGNRQGYYNGNARGGNG-----S
L E+++ ++ +++ ++ S++E ++ LL+ E RL S+KS S SH +N P SN P Q Y+N N+ G G +
Subjt: LDEEFNAVVAMLQGRASV-SWSELQAELLVFEKRLEIQNSHKSTVSFSHNATANMAVNRGSNSPKPSN-----PANGNGNRQGYYNGNARGGNG-----S
Query: RGRGKGRG-YNYSN----NRPPCQVCGKGNVNGNY--------HPGRGNGQSPNAFMA-TQQPATPETVADP
RG G G YN +N N+PP + G Y H Q P +M+ T +P ++ +P
Subjt: RGRGKGRG-YNYSN----NRPPCQVCGKGNVNGNY--------HPGRGNGQSPNAFMA-TQQPATPETVADP
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| ATMG00300.1 Gag-Pol-related retrotransposon family protein | 2.3e-10 | 35.53 | Show/hide |
Query: ESKNVWHRRLGHPSPKVLDMIVKGCNLQVKSNEVLSFCESCQFGKSHALAFPLSNNRAVHRFDLVHTDLWGPAPVP
+ +WH RL H S + ++++VK L L FCE C +GK+H + F + + D VH+DLWG VP
Subjt: ESKNVWHRRLGHPSPKVLDMIVKGCNLQVKSNEVLSFCESCQFGKSHALAFPLSNNRAVHRFDLVHTDLWGPAPVP
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