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Lag0016101 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0016101
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr12:33120836..33122568
RNA-Seq ExpressionLag0016101
SyntenyLag0016101
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040138.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.6e-0948.78Show/hide
Query:  MNGAKSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLLETYKDVKIALKSRKEEIIISVAMHSPAFSSSSKQFEQASA
        MN +K+++ENLDEFKKLT+E  Q GEKL  ESEA I INSL +TYK+VK  LK  +E +++ V + +        Q E+ +A
Subjt:  MNGAKSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLLETYKDVKIALKSRKEEIIISVAMHSPAFSSSSKQFEQASA

KAA0042267.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.5e-0973.47Show/hide
Query:  KSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLLETYKDVKIALK
        K++DENLDEFKKLT+ + QTGEKLG ESEATILINS+ +TYK+VK  LK
Subjt:  KSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLLETYKDVKIALK

KAA0051442.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.2e-0948.42Show/hide
Query:  NGAKSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLLETYKDVKIALKSRKEEIII-SVAMHSPAFSSSSKQFEQASAKEEGRNYQKTEPR
        N  K++DENLDEFKKLT+ + QTGEKLG E+EA ILINS+ +TYK+VK  LK  +E I + SV     +     K   + S   EG+N+++ E R
Subjt:  NGAKSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLLETYKDVKIALKSRKEEIII-SVAMHSPAFSSSSKQFEQASAKEEGRNYQKTEPR

KAA0051753.1 copia-like retroelement pol polyprotein [Cucumis melo var. makuwa]6.2e-1167.8Show/hide
Query:  MNGAKSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLLETYKDVKIALKSRKEEI
        MN AKSMDENLDEFK+L+ EI QT EKLG ESEA IL+NSL +TYK+VK+A+K  ++ I
Subjt:  MNGAKSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLLETYKDVKIALKSRKEEI

TYK27655.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.6e-0948.78Show/hide
Query:  MNGAKSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLLETYKDVKIALKSRKEEIIISVAMHSPAFSSSSKQFEQASA
        MN +K+++ENLDEFKKLT+E  Q GEKL  ESEA I INSL +TYK+VK  LK  +E +++ V + +        Q E+ +A
Subjt:  MNGAKSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLLETYKDVKIALKSRKEEIIISVAMHSPAFSSSSKQFEQASA

TrEMBL top hitse value%identityAlignment
A0A5A7TAZ3 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-0948.78Show/hide
Query:  MNGAKSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLLETYKDVKIALKSRKEEIIISVAMHSPAFSSSSKQFEQASA
        MN +K+++ENLDEFKKLT+E  Q GEKL  ESEA I INSL +TYK+VK  LK  +E +++ V + +        Q E+ +A
Subjt:  MNGAKSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLLETYKDVKIALKSRKEEIIISVAMHSPAFSSSSKQFEQASA

A0A5A7TKQ1 Retrovirus-related Pol polyprotein from transposon TNT 1-942.2e-0973.47Show/hide
Query:  KSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLLETYKDVKIALK
        K++DENLDEFKKLT+ + QTGEKLG ESEATILINS+ +TYK+VK  LK
Subjt:  KSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLLETYKDVKIALK

A0A5A7U6R2 Retrovirus-related Pol polyprotein from transposon TNT 1-945.7e-1048.42Show/hide
Query:  NGAKSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLLETYKDVKIALKSRKEEIII-SVAMHSPAFSSSSKQFEQASAKEEGRNYQKTEPR
        N  K++DENLDEFKKLT+ + QTGEKLG E+EA ILINS+ +TYK+VK  LK  +E I + SV     +     K   + S   EG+N+++ E R
Subjt:  NGAKSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLLETYKDVKIALKSRKEEIII-SVAMHSPAFSSSSKQFEQASAKEEGRNYQKTEPR

A0A5A7U763 Copia-like retroelement pol polyprotein3.0e-1167.8Show/hide
Query:  MNGAKSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLLETYKDVKIALKSRKEEI
        MN AKSMDENLDEFK+L+ EI QT EKLG ESEA IL+NSL +TYK+VK+A+K  ++ I
Subjt:  MNGAKSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLLETYKDVKIALKSRKEEI

A0A5D3DWH4 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-0948.78Show/hide
Query:  MNGAKSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLLETYKDVKIALKSRKEEIIISVAMHSPAFSSSSKQFEQASA
        MN +K+++ENLDEFKKLT+E  Q GEKL  ESEA I INSL +TYK+VK  LK  +E +++ V + +        Q E+ +A
Subjt:  MNGAKSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLLETYKDVKIALKSRKEEIIISVAMHSPAFSSSSKQFEQASA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGGTGCAAAATCAATGGATGAGAATCTTGATGAATTCAAGAAGTTAACCTCTGAAATTAAACAAACTGGTGAGAAATTAGGAAATGAAAGTGAGGCAACTATTCT
GATTAATTCACTTCTTGAAACTTATAAGGATGTGAAGATTGCACTGAAGTCAAGAAAAGAGGAAATAATCATATCAGTGGCCATGCACTCACCTGCTTTTTCAAGCTCAT
CAAAACAATTTGAACAAGCAAGTGCAAAAGAAGAAGGAAGAAATTACCAAAAGACTGAACCCAGAGACAACACAGAGGGAGACGACAATGGCGGTGCTAGAGAGAGAAAG
TTCACTGAGATGGCCAGTCATGATAAGGGCAATCACTTGCAAGAAATACTACGAAAAGCTTGCAACAACAAGAGGATTTGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATGGTGCAAAATCAATGGATGAGAATCTTGATGAATTCAAGAAGTTAACCTCTGAAATTAAACAAACTGGTGAGAAATTAGGAAATGAAAGTGAGGCAACTATTCT
GATTAATTCACTTCTTGAAACTTATAAGGATGTGAAGATTGCACTGAAGTCAAGAAAAGAGGAAATAATCATATCAGTGGCCATGCACTCACCTGCTTTTTCAAGCTCAT
CAAAACAATTTGAACAAGCAAGTGCAAAAGAAGAAGGAAGAAATTACCAAAAGACTGAACCCAGAGACAACACAGAGGGAGACGACAATGGCGGTGCTAGAGAGAGAAAG
TTCACTGAGATGGCCAGTCATGATAAGGGCAATCACTTGCAAGAAATACTACGAAAAGCTTGCAACAACAAGAGGATTTGCTGA
Protein sequenceShow/hide protein sequence
MNGAKSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLLETYKDVKIALKSRKEEIIISVAMHSPAFSSSSKQFEQASAKEEGRNYQKTEPRDNTEGDDNGGARERK
FTEMASHDKGNHLQEILRKACNNKRIC