; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0016182 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0016182
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr12:34450957..34457914
RNA-Seq ExpressionLag0016182
SyntenyLag0016182
Gene Ontology termsGO:0006275 - regulation of DNA replication (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0030337 - DNA polymerase processivity factor activity (molecular function)
InterPro domainsIPR000730 - Proliferating cell nuclear antigen, PCNA
IPR022648 - Proliferating cell nuclear antigen, PCNA, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7026022.1 hypothetical protein SDJN02_12520, partial [Cucurbita argyrosperma subsp. argyrosperma]1.6e-4547.96Show/hide
Query:  MFIIRVKPVIPFFEAISPLTRISTQADLKFSPQELRITVFQHSPRLVAMLQMTSQHFSSFLVSRNLTARINLDTFHSTLMAANNYSAITINFLENKMSLL
        M  I + PV P   A+SPLT+I+TQAD+  SP    +TV Q+ PR + +LQ+T   F+SFLV++NL ARI LD+FH+TL++A+  SA++IN +E    LL
Subjt:  MFIIRVKPVIPFFEAISPLTRISTQADLKFSPQELRITVFQHSPRLVAMLQMTSQHFSSFLVSRNLTARINLDTFHSTLMAANNYSAITINFLENKMSLL

Query:  LRFENSKNRPVWRGELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRICVTLTNSQVKFTAGAKEVILSKEDGEFVLLDGKEDLVDKQ
        L  EN+    + R  LELLP E  + D+  IDFTN VSI   +F RIV  ELSV+Y+DR+C+T + SQ+K + G K+ IL++E GE+V ++ +   V+ +
Subjt:  LRFENSKNRPVWRGELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRICVTLTNSQVKFTAGAKEVILSKEDGEFVLLDGKEDLVDKQ

Query:  FHFTIHPMTFFGDLTDRSRRE
        F F+IHP +FF +LTD+SRR+
Subjt:  FHFTIHPMTFFGDLTDRSRRE

XP_022145570.1 uncharacterized protein LOC111014988 [Momordica charantia]3.6e-4551.61Show/hide
Query:  MFIIRVKPVIPFFEAISPLTRISTQADLKFSPQELRITVFQHSPRLVAMLQMTSQHFSSFLVSRNLTARINLDTFHSTLMAANNYSAITINFLENKMSLL
        MF+IR++P+ P F+AI  LTRI+T+AD+KFSP +  I V Q SP  +A LQM+ + F+SF V  N T+RI LD+ HS LM    Y A+T + LEN+  LL
Subjt:  MFIIRVKPVIPFFEAISPLTRISTQADLKFSPQELRITVFQHSPRLVAMLQMTSQHFSSFLVSRNLTARINLDTFHSTLMAANNYSAITINFLENKMSLL

Query:  LRFENSKNRPVWRGELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRICVTLTNSQVKFTAGAKEVILSKEDGEFVLLDGKEDLVDKQ
        LRFENS+N P  R EL+L PSEEE  DV +ID+ N VSI S EF  IV  +LS  +  RIC TLT+SQVKF+   +E+IL+KE G+ +++   E  V+ +
Subjt:  LRFENSKNRPVWRGELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRICVTLTNSQVKFTAGAKEVILSKEDGEFVLLDGKEDLVDKQ

Query:  FHFTIHPMTFFGDLTDR
        F FT+HP +FF DL D+
Subjt:  FHFTIHPMTFFGDLTDR

XP_022964069.1 uncharacterized protein LOC111464206 [Cucurbita moschata]3.3e-3049.06Show/hide
Query:  VSRNLTARINLDTFHSTLMAANNYSAITINFLENKMSLLLRFENSKNRPVWRGELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRIC
        V++NL ARI LD+FH+TL++A+  SA++IN +E    LLL  EN+    + R  LELLP E  + D+  IDFTN VSI   +F RIV  ELSV+Y+DR+C
Subjt:  VSRNLTARINLDTFHSTLMAANNYSAITINFLENKMSLLLRFENSKNRPVWRGELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRIC

Query:  VTLTNSQVKFTAGAKEVILSKEDGEFVLLDGKEDLVDKQFHFTIHPMTFFGDLTDRSRR
        +T + SQ+K + G K+ IL++E GE+V ++ +E  V+ +F F+IHP +FF +LTD+SRR
Subjt:  VTLTNSQVKFTAGAKEVILSKEDGEFVLLDGKEDLVDKQFHFTIHPMTFFGDLTDRSRR

XP_023514482.1 uncharacterized protein LOC111778741 [Cucurbita pepo subsp. pepo]1.9e-3049.06Show/hide
Query:  VSRNLTARINLDTFHSTLMAANNYSAITINFLENKMSLLLRFENSKNRPVWRGELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRIC
        V++NL ARI LD+FH+TL++A+  SA++IN +E    LLL  EN+    + R  LELLP E  + D+  IDFTN VSI   +F RIV  ELSV+YQDR+C
Subjt:  VSRNLTARINLDTFHSTLMAANNYSAITINFLENKMSLLLRFENSKNRPVWRGELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRIC

Query:  VTLTNSQVKFTAGAKEVILSKEDGEFVLLDGKEDLVDKQFHFTIHPMTFFGDLTDRSRR
        +T + SQ+K + G K+ IL++E GE+V ++ ++  V+ +F F+IHP +FF +LTD+SRR
Subjt:  VTLTNSQVKFTAGAKEVILSKEDGEFVLLDGKEDLVDKQFHFTIHPMTFFGDLTDRSRR

XP_031744160.1 uncharacterized protein LOC116404808 [Cucumis sativus]4.3e-3039.55Show/hide
Query:  MFIIRVKPVIPFFEAISPLTRISTQADLKFSPQELRITVFQHSPRLVAMLQMTSQHFSSFLVSRNLTARINLDTFHSTLMAANNYSAITINFLENKMSLL
        MF++R+K   PFF A S L  I+ +AD+KF+P    ITV    PR VA L MT   F ++ V  + T+RI+L++FH  L+      ++TI+ L N   ++
Subjt:  MFIIRVKPVIPFFEAISPLTRISTQADLKFSPQELRITVFQHSPRLVAMLQMTSQHFSSFLVSRNLTARINLDTFHSTLMAANNYSAITINFLENKMSLL

Query:  LRFENSKNRPVWRGELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRICVTLTNSQVKFTAGAKEVILSKEDGEFVLLDGKEDLVDKQ
        LRFE+S + P  R EL L PS+EE  D+ +ID+    SIDS    R++++ L + + D ICVT T SQVKF+  +KE++L+KE+ E +++ G E   + +
Subjt:  LRFENSKNRPVWRGELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRICVTLTNSQVKFTAGAKEVILSKEDGEFVLLDGKEDLVDKQ

Query:  FHFTIHPMTFFGDLTDRSRR
            ++PM FF + T  + R
Subjt:  FHFTIHPMTFFGDLTDRSRR

TrEMBL top hitse value%identityAlignment
A0A1S4E4N8 uncharacterized protein LOC1035022634.3e-2838.28Show/hide
Query:  MFIIRVKPVIPFFEAISPLTRISTQADLKFSPQELRITVFQHSPRLVAMLQMTSQHFSSFLVSRNLTARINLDTFHSTLMAANNYSAITINFLENKMSLL
        MF++R+K   P F+A S L +I+ +AD+KF+P    I     SPR VA LQMT   F ++ V  + T+RI+L++FH  L+      ++TI+ L N   L+
Subjt:  MFIIRVKPVIPFFEAISPLTRISTQADLKFSPQELRITVFQHSPRLVAMLQMTSQHFSSFLVSRNLTARINLDTFHSTLMAANNYSAITINFLENKMSLL

Query:  LRFENSKNRPVWRGELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRICVTLTNSQVKFTAGAKEVILSKEDGEFVLLDGKE-DLVDK
        LRFE+S + P    EL L PS+EE  D+ ++D+    SIDS +  R++++ L + + D ICVT T SQVKF+  +KE++L+KE   F+     E D++++
Subjt:  LRFENSKNRPVWRGELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRICVTLTNSQVKFTAGAKEVILSKEDGEFVLLDGKE-DLVDK

Query:  QFHFTIHPM
        +    +  M
Subjt:  QFHFTIHPM

A0A6J1CUU8 uncharacterized protein LOC1110149881.7e-4551.61Show/hide
Query:  MFIIRVKPVIPFFEAISPLTRISTQADLKFSPQELRITVFQHSPRLVAMLQMTSQHFSSFLVSRNLTARINLDTFHSTLMAANNYSAITINFLENKMSLL
        MF+IR++P+ P F+AI  LTRI+T+AD+KFSP +  I V Q SP  +A LQM+ + F+SF V  N T+RI LD+ HS LM    Y A+T + LEN+  LL
Subjt:  MFIIRVKPVIPFFEAISPLTRISTQADLKFSPQELRITVFQHSPRLVAMLQMTSQHFSSFLVSRNLTARINLDTFHSTLMAANNYSAITINFLENKMSLL

Query:  LRFENSKNRPVWRGELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRICVTLTNSQVKFTAGAKEVILSKEDGEFVLLDGKEDLVDKQ
        LRFENS+N P  R EL+L PSEEE  DV +ID+ N VSI S EF  IV  +LS  +  RIC TLT+SQVKF+   +E+IL+KE G+ +++   E  V+ +
Subjt:  LRFENSKNRPVWRGELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRICVTLTNSQVKFTAGAKEVILSKEDGEFVLLDGKEDLVDKQ

Query:  FHFTIHPMTFFGDLTDR
        F FT+HP +FF DL D+
Subjt:  FHFTIHPMTFFGDLTDR

A0A6J1HM20 uncharacterized protein LOC1114642061.6e-3049.06Show/hide
Query:  VSRNLTARINLDTFHSTLMAANNYSAITINFLENKMSLLLRFENSKNRPVWRGELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRIC
        V++NL ARI LD+FH+TL++A+  SA++IN +E    LLL  EN+    + R  LELLP E  + D+  IDFTN VSI   +F RIV  ELSV+Y+DR+C
Subjt:  VSRNLTARINLDTFHSTLMAANNYSAITINFLENKMSLLLRFENSKNRPVWRGELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRIC

Query:  VTLTNSQVKFTAGAKEVILSKEDGEFVLLDGKEDLVDKQFHFTIHPMTFFGDLTDRSRR
        +T + SQ+K + G K+ IL++E GE+V ++ +E  V+ +F F+IHP +FF +LTD+SRR
Subjt:  VTLTNSQVKFTAGAKEVILSKEDGEFVLLDGKEDLVDKQFHFTIHPMTFFGDLTDRSRR

A0A6J1KE78 uncharacterized protein LOC1114941894.6e-3049.06Show/hide
Query:  VSRNLTARINLDTFHSTLMAANNYSAITINFLENKMSLLLRFENSKNRPVWRGELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRIC
        V++NL ARI LD+FH+TL++A+  SA++IN LE    LLL  EN+    + R  L+LLP E  + D+  IDFTN VSI   +F RIV  ELSV+YQDR+C
Subjt:  VSRNLTARINLDTFHSTLMAANNYSAITINFLENKMSLLLRFENSKNRPVWRGELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRIC

Query:  VTLTNSQVKFTAGAKEVILSKEDGEFVLLDGKEDLVDKQFHFTIHPMTFFGDLTDRSRR
        +T + SQ+K + G K+ IL++E GE+V ++ +   V+ +F F+IHP +FF +LTD+SRR
Subjt:  VTLTNSQVKFTAGAKEVILSKEDGEFVLLDGKEDLVDKQFHFTIHPMTFFGDLTDRSRR

A0A6J1KIW5 uncharacterized protein LOC1114948748.1e-2735.35Show/hide
Query:  MFIIRVKPVIPFFEAISPLTRISTQADLKFSPQELRITVFQHSPRLVAMLQMTSQHFSSFLVSRNLTARINLDTFHSTLMAANNYSAITINFLENKMSLL
        MF++R+K   P  +  S L +I+ ++D+ F+P  L++T  + SPR +A LQ+  Q F+ + V+ +  +RI+L++ H  L+   + SA+TI+ LEN   ++
Subjt:  MFIIRVKPVIPFFEAISPLTRISTQADLKFSPQELRITVFQHSPRLVAMLQMTSQHFSSFLVSRNLTARINLDTFHSTLMAANNYSAITINFLENKMSLL

Query:  LRFENSKNRPVWRGELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRICVTLTNSQVKFTAGAKEVILSKEDGEFVLLDGKEDLVDKQ
        LRFE   + P  R +  LLP +E+ ++  +I+++ S+++DS + LR V  EL + + D +CVT+T+S+V+F+  ++E+I  KE G   +L    D V  +
Subjt:  LRFENSKNRPVWRGELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRICVTLTNSQVKFTAGAKEVILSKEDGEFVLLDGKEDLVDKQ

Query:  FHFTIHPMTFFGDLT
        F   ++PM FF +LT
Subjt:  FHFTIHPMTFFGDLT

SwissProt top hitse value%identityAlignment
Q9VIT0 Proliferating cell nuclear antigen 25.8e-0623.12Show/hide
Query:  MFIIRVKPVIPFFEAISPLTRISTQADLKFSPQELRITVFQHSPRLVAMLQMTSQHFSSFLVSRNLTARINLDTFHSTLMAANNYSAITINFLENKMSLL
        M   R+   +   + +  L  I  Q  L  S   L +    +S   +  L + S  F  F   RN++  ++L +    L  AN+  A+TI  ++    + 
Subjt:  MFIIRVKPVIPFFEAISPLTRISTQADLKFSPQELRITVFQHSPRLVAMLQMTSQHFSSFLVSRNLTARINLDTFHSTLMAANNYSAITINFLENKMSLL

Query:  LRFENSKNRPVWRGELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRICVTLTNSQVKFTA
        L FE+         EL+LL  +++ +++ K D+T  + + S+EF RI +D     + + + +  ++  ++F A
Subjt:  LRFENSKNRPVWRGELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRICVTLTNSQVKFTA

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCATCATTAGGGTTAAGCCTGTGATTCCTTTCTTCGAAGCAATATCCCCTCTCACTCGAATCTCAACACAAGCCGACTTGAAATTCTCTCCACAGGAGTTGAGGAT
AACAGTGTTCCAACATTCCCCTCGCTTGGTCGCAATGCTTCAAATGACATCTCAACACTTCAGCTCCTTTTTGGTCAGTCGAAATCTCACTGCCAGAATTAACCTCGACA
CCTTCCACTCCACATTGATGGCAGCCAATAATTACTCTGCAATAACCATCAATTTTCTCGAAAACAAAATGAGCCTCCTCCTCAGATTTGAGAATTCAAAGAATCGACCA
GTGTGGCGTGGGGAATTGGAACTGTTGCCTTCAGAAGAGGAGGAGGTAGACGTGAGTAAAATTGATTTTACAAACAGTGTCTCAATTGATTCAACAGAGTTTCTACGCAT
TGTACAAGACGAGCTATCTGTCACTTACCAAGATAGAATTTGTGTCACACTAACCAATTCTCAAGTCAAGTTCACCGCTGGAGCTAAAGAGGTCATCCTTTCTAAAGAGG
ATGGAGAGTTTGTACTTTTGGATGGTAAAGAAGATTTAGTTGATAAACAATTCCATTTCACAATCCATCCCATGACGTTCTTCGGTGATCTGACCGATAGGTCGAGAAGG
GAAAACAGAGGAAAGTTGGAATTAACCCAGAAATGCGACCGCATTTCGGGAAAAACAGAGGTCGTTCCGAGTCCGTCATGGGTTGTTTTGAACGAGACTTTTGCTCACCT
AATCGGCCGTTTTGACCCTGAAAATGACTGGCCTACCTACCAACACCTATTTCGTGGCTCCTCAACCACTTCCAACACTATATAA
mRNA sequenceShow/hide mRNA sequence
ATGTTCATCATTAGGGTTAAGCCTGTGATTCCTTTCTTCGAAGCAATATCCCCTCTCACTCGAATCTCAACACAAGCCGACTTGAAATTCTCTCCACAGGAGTTGAGGAT
AACAGTGTTCCAACATTCCCCTCGCTTGGTCGCAATGCTTCAAATGACATCTCAACACTTCAGCTCCTTTTTGGTCAGTCGAAATCTCACTGCCAGAATTAACCTCGACA
CCTTCCACTCCACATTGATGGCAGCCAATAATTACTCTGCAATAACCATCAATTTTCTCGAAAACAAAATGAGCCTCCTCCTCAGATTTGAGAATTCAAAGAATCGACCA
GTGTGGCGTGGGGAATTGGAACTGTTGCCTTCAGAAGAGGAGGAGGTAGACGTGAGTAAAATTGATTTTACAAACAGTGTCTCAATTGATTCAACAGAGTTTCTACGCAT
TGTACAAGACGAGCTATCTGTCACTTACCAAGATAGAATTTGTGTCACACTAACCAATTCTCAAGTCAAGTTCACCGCTGGAGCTAAAGAGGTCATCCTTTCTAAAGAGG
ATGGAGAGTTTGTACTTTTGGATGGTAAAGAAGATTTAGTTGATAAACAATTCCATTTCACAATCCATCCCATGACGTTCTTCGGTGATCTGACCGATAGGTCGAGAAGG
GAAAACAGAGGAAAGTTGGAATTAACCCAGAAATGCGACCGCATTTCGGGAAAAACAGAGGTCGTTCCGAGTCCGTCATGGGTTGTTTTGAACGAGACTTTTGCTCACCT
AATCGGCCGTTTTGACCCTGAAAATGACTGGCCTACCTACCAACACCTATTTCGTGGCTCCTCAACCACTTCCAACACTATATAA
Protein sequenceShow/hide protein sequence
MFIIRVKPVIPFFEAISPLTRISTQADLKFSPQELRITVFQHSPRLVAMLQMTSQHFSSFLVSRNLTARINLDTFHSTLMAANNYSAITINFLENKMSLLLRFENSKNRP
VWRGELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRICVTLTNSQVKFTAGAKEVILSKEDGEFVLLDGKEDLVDKQFHFTIHPMTFFGDLTDRSRR
ENRGKLELTQKCDRISGKTEVVPSPSWVVLNETFAHLIGRFDPENDWPTYQHLFRGSSTTSNTI