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Lag0016193 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0016193
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr12:34612466..34613461
RNA-Seq ExpressionLag0016193
SyntenyLag0016193
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RYQ81102.1 hypothetical protein Ahy_Scaffold1g107105 isoform A [Arachis hypogaea]4.1e-0827.43Show/hide
Query:  KDLRSFAADYVQSSRSA-RCSRVSTGFKGSNVSSVPPSRTQWVAPVGCDLKLNTDAAYHGDTRTAGAICVLQDASGRGFTRLQ------------IEFDS
        ++L+   A+Y+ +++   R ++V  G  G +       R  W  P    +K+N DAA+  +T  A +  V++D  G+  T +             IE D 
Subjt:  KDLRSFAADYVQSSRSA-RCSRVSTGFKGSNVSSVPPSRTQWVAPVGCDLKLNTDAAYHGDTRTAGAICVLQDASGRGFTRLQ------------IEFDS

Query:  LRVVRLLTKEVEDISEVGALMDLVLQMFPRGHFGGASFTSRDGNRVAHKLAQMAMESPLKRVWVGECPDRISSLV
        L +V+ + K    ++E   ++  +LQM       GA++T R+GN +AH+LA MA E+ L+R W    P ++ +++
Subjt:  LRVVRLLTKEVEDISEVGALMDLVLQMFPRGHFGGASFTSRDGNRVAHKLAQMAMESPLKRVWVGECPDRISSLV

RYR56166.1 hypothetical protein Ahy_A05g021937 [Arachis hypogaea]1.4e-0835.96Show/hide
Query:  LKLNTDAAYHGDTRTAGAICVLQDASGRGFTRLQIEFDSLRVVRLLTKEVEDISEVGALMDLVLQMFPRGHFGGASFTSRDGNRVAHKLAQMAMESPLKR
        LK+NTDAAYH  T  A +  V+++  G+  T     F +   +     E +   E      L+LQM       GA++T R+GNRVAH+LA MA  + L+R
Subjt:  LKLNTDAAYHGDTRTAGAICVLQDASGRGFTRLQIEFDSLRVVRLLTKEVEDISEVGALMDLVLQMFPRGHFGGASFTSRDGNRVAHKLAQMAMESPLKR

Query:  VWVGECPDRISSLV
         W+   PD++ S +
Subjt:  VWVGECPDRISSLV

RYR61003.1 hypothetical protein Ahy_A04g018094 [Arachis hypogaea]5.4e-0829.28Show/hide
Query:  KGSNVSSVPP-------SRTQWVAPVGCDLKLNTDAAYHGDTRTAGAICVLQDASGRGFT---------------------------RLQ-----IEFDS
        +GS  + +P         R  W  P    LK+NTDAA+H DT  A    V++D  G+  T                            LQ     IE DS
Subjt:  KGSNVSSVPP-------SRTQWVAPVGCDLKLNTDAAYHGDTRTAGAICVLQDASGRGFT---------------------------RLQ-----IEFDS

Query:  LRVVRLLTKEVEDISEVGALMDLVLQMFPRGHFGGASFTSRDGNRVAHKLAQMAMESPLKRVWVGECPDRISSLVFLDCVL
        L +V+ + K    I+E  A+M  + Q+       GA++T RDGN++AH+LA M   + L R WV   P+++ +++  +  L
Subjt:  LRVVRLLTKEVEDISEVGALMDLVLQMFPRGHFGGASFTSRDGNRVAHKLAQMAMESPLKRVWVGECPDRISSLVFLDCVL

TXG71533.1 hypothetical protein EZV62_000112 [Acer yangbiense]8.3e-0930.19Show/hide
Query:  TGFKGSN----VSSVPPSR-TQWVAPVGCDLKLNTDAAYHGDTRTAG---------AICVLQD---ASGRGFTRLQIEFDSLRVVRLLTKEVEDISEVGA
        T ++G+N    V  V   R  +W+AP    +K+NTDAA +   + AG         A+ +L+    A  R F+++ +E D+L VV+ +  +    SEVG 
Subjt:  TGFKGSN----VSSVPPSR-TQWVAPVGCDLKLNTDAAYHGDTRTAG---------AICVLQD---ASGRGFTRLQIEFDSLRVVRLLTKEVEDISEVGA

Query:  LMDLVLQMFPRGHFGGASFTSRDGNRVAHKLAQMAMESPLKRVWVGECPDRISSLVFLD
        +++ +  +  R      +F  R GN+VAH LA++ +    + VW+ +CP  + +LV  D
Subjt:  LMDLVLQMFPRGHFGGASFTSRDGNRVAHKLAQMAMESPLKRVWVGECPDRISSLVFLD

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]6.3e-1734.5Show/hide
Query:  DLRSFAADYVQSSRSARCSRVSTGFKGSNVSSVPPSRTQWVAPVGCDLKLNTDAAYHGDTRTAGAICVLQDASG--------------------------
        DL S++ +Y+Q  ++A+ S  S     + V   PP    W  P    LK+N DAA+  ++  AG   +++D++G                          
Subjt:  DLRSFAADYVQSSRSARCSRVSTGFKGSNVSSVPPSRTQWVAPVGCDLKLNTDAAYHGDTRTAGAICVLQDASG--------------------------

Query:  -------RGFTRLQIEFDSLRVVRLLTKEVEDISEVGALMDLVLQMFPRGHFG--GASFTSRDGNRVAHKLAQMAMESPLKRVWVGECPDRISSLVFLDC
                GF R QIE DSLR+  LLT +  D SEVG L   V+++F   H      SFT R+GN  AH LAQ+A+ SP  ++WV E PD ISS++ +DC
Subjt:  -------RGFTRLQIEFDSLRVVRLLTKEVEDISEVGALMDLVLQMFPRGHFG--GASFTSRDGNRVAHKLAQMAMESPLKRVWVGECPDRISSLVFLDC

TrEMBL top hitse value%identityAlignment
A0A444WUQ1 RNase H domain-containing protein2.0e-0827.43Show/hide
Query:  KDLRSFAADYVQSSRSA-RCSRVSTGFKGSNVSSVPPSRTQWVAPVGCDLKLNTDAAYHGDTRTAGAICVLQDASGRGFTRLQ------------IEFDS
        ++L+   A+Y+ +++   R ++V  G  G +       R  W  P    +K+N DAA+  +T  A +  V++D  G+  T +             IE D 
Subjt:  KDLRSFAADYVQSSRSA-RCSRVSTGFKGSNVSSVPPSRTQWVAPVGCDLKLNTDAAYHGDTRTAGAICVLQDASGRGFTRLQ------------IEFDS

Query:  LRVVRLLTKEVEDISEVGALMDLVLQMFPRGHFGGASFTSRDGNRVAHKLAQMAMESPLKRVWVGECPDRISSLV
        L +V+ + K    ++E   ++  +LQM       GA++T R+GN +AH+LA MA E+ L+R W    P ++ +++
Subjt:  LRVVRLLTKEVEDISEVGALMDLVLQMFPRGHFGGASFTSRDGNRVAHKLAQMAMESPLKRVWVGECPDRISSLV

A0A445CZ05 RNase H domain-containing protein6.8e-0935.96Show/hide
Query:  LKLNTDAAYHGDTRTAGAICVLQDASGRGFTRLQIEFDSLRVVRLLTKEVEDISEVGALMDLVLQMFPRGHFGGASFTSRDGNRVAHKLAQMAMESPLKR
        LK+NTDAAYH  T  A +  V+++  G+  T     F +   +     E +   E      L+LQM       GA++T R+GNRVAH+LA MA  + L+R
Subjt:  LKLNTDAAYHGDTRTAGAICVLQDASGRGFTRLQIEFDSLRVVRLLTKEVEDISEVGALMDLVLQMFPRGHFGGASFTSRDGNRVAHKLAQMAMESPLKR

Query:  VWVGECPDRISSLV
         W+   PD++ S +
Subjt:  VWVGECPDRISSLV

A0A445DCW5 RNase H domain-containing protein2.6e-0829.28Show/hide
Query:  KGSNVSSVPP-------SRTQWVAPVGCDLKLNTDAAYHGDTRTAGAICVLQDASGRGFT---------------------------RLQ-----IEFDS
        +GS  + +P         R  W  P    LK+NTDAA+H DT  A    V++D  G+  T                            LQ     IE DS
Subjt:  KGSNVSSVPP-------SRTQWVAPVGCDLKLNTDAAYHGDTRTAGAICVLQDASGRGFT---------------------------RLQ-----IEFDS

Query:  LRVVRLLTKEVEDISEVGALMDLVLQMFPRGHFGGASFTSRDGNRVAHKLAQMAMESPLKRVWVGECPDRISSLVFLDCVL
        L +V+ + K    I+E  A+M  + Q+       GA++T RDGN++AH+LA M   + L R WV   P+++ +++  +  L
Subjt:  LRVVRLLTKEVEDISEVGALMDLVLQMFPRGHFGGASFTSRDGNRVAHKLAQMAMESPLKRVWVGECPDRISSLVFLDCVL

A0A5C7IQ65 RNase H domain-containing protein4.0e-0930.19Show/hide
Query:  TGFKGSN----VSSVPPSR-TQWVAPVGCDLKLNTDAAYHGDTRTAG---------AICVLQD---ASGRGFTRLQIEFDSLRVVRLLTKEVEDISEVGA
        T ++G+N    V  V   R  +W+AP    +K+NTDAA +   + AG         A+ +L+    A  R F+++ +E D+L VV+ +  +    SEVG 
Subjt:  TGFKGSN----VSSVPPSR-TQWVAPVGCDLKLNTDAAYHGDTRTAG---------AICVLQD---ASGRGFTRLQIEFDSLRVVRLLTKEVEDISEVGA

Query:  LMDLVLQMFPRGHFGGASFTSRDGNRVAHKLAQMAMESPLKRVWVGECPDRISSLVFLD
        +++ +  +  R      +F  R GN+VAH LA++ +    + VW+ +CP  + +LV  D
Subjt:  LMDLVLQMFPRGHFGGASFTSRDGNRVAHKLAQMAMESPLKRVWVGECPDRISSLVFLD

A0A6J1DBJ7 uncharacterized protein LOC1110189733.1e-1734.5Show/hide
Query:  DLRSFAADYVQSSRSARCSRVSTGFKGSNVSSVPPSRTQWVAPVGCDLKLNTDAAYHGDTRTAGAICVLQDASG--------------------------
        DL S++ +Y+Q  ++A+ S  S     + V   PP    W  P    LK+N DAA+  ++  AG   +++D++G                          
Subjt:  DLRSFAADYVQSSRSARCSRVSTGFKGSNVSSVPPSRTQWVAPVGCDLKLNTDAAYHGDTRTAGAICVLQDASG--------------------------

Query:  -------RGFTRLQIEFDSLRVVRLLTKEVEDISEVGALMDLVLQMFPRGHFG--GASFTSRDGNRVAHKLAQMAMESPLKRVWVGECPDRISSLVFLDC
                GF R QIE DSLR+  LLT +  D SEVG L   V+++F   H      SFT R+GN  AH LAQ+A+ SP  ++WV E PD ISS++ +DC
Subjt:  -------RGFTRLQIEFDSLRVVRLLTKEVEDISEVGALMDLVLQMFPRGHFG--GASFTSRDGNRVAHKLAQMAMESPLKRVWVGECPDRISSLVFLDC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTAGGATTGGTGGAAGAAAGCTTTGTGTTTTATGCCATCGATTTCCTGAGAGTGGCCTTCACGTGTTCTGGTATTGTAAGGATCTCAGGTCTTTTGCAGCTGACTA
TGTTCAAAGTTCCAGATCTGCTCGGTGCTCTCGGGTCTCTACTGGTTTTAAGGGCTCAAATGTGTCGTCGGTGCCTCCTAGCCGTACTCAGTGGGTGGCACCGGTGGGTT
GTGACTTGAAACTCAACACTGATGCAGCCTATCATGGTGACACTAGAACTGCAGGAGCGATTTGTGTTTTGCAAGATGCGAGTGGTCGGGGGTTCACCCGGTTGCAAATT
GAGTTTGATTCCTTACGGGTGGTTCGTTTGTTGACCAAAGAGGTTGAAGACATTTCAGAGGTGGGGGCTCTAATGGATTTGGTGCTACAAATGTTCCCTCGGGGTCATTT
TGGGGGTGCTTCGTTTACCTCTCGAGATGGCAATCGAGTGGCGCATAAATTAGCTCAAATGGCTATGGAATCTCCTCTGAAGCGTGTTTGGGTTGGGGAATGTCCTGACC
GTATTTCTTCGTTGGTTTTCTTGGACTGTGTTTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTAGGATTGGTGGAAGAAAGCTTTGTGTTTTATGCCATCGATTTCCTGAGAGTGGCCTTCACGTGTTCTGGTATTGTAAGGATCTCAGGTCTTTTGCAGCTGACTA
TGTTCAAAGTTCCAGATCTGCTCGGTGCTCTCGGGTCTCTACTGGTTTTAAGGGCTCAAATGTGTCGTCGGTGCCTCCTAGCCGTACTCAGTGGGTGGCACCGGTGGGTT
GTGACTTGAAACTCAACACTGATGCAGCCTATCATGGTGACACTAGAACTGCAGGAGCGATTTGTGTTTTGCAAGATGCGAGTGGTCGGGGGTTCACCCGGTTGCAAATT
GAGTTTGATTCCTTACGGGTGGTTCGTTTGTTGACCAAAGAGGTTGAAGACATTTCAGAGGTGGGGGCTCTAATGGATTTGGTGCTACAAATGTTCCCTCGGGGTCATTT
TGGGGGTGCTTCGTTTACCTCTCGAGATGGCAATCGAGTGGCGCATAAATTAGCTCAAATGGCTATGGAATCTCCTCTGAAGCGTGTTTGGGTTGGGGAATGTCCTGACC
GTATTTCTTCGTTGGTTTTCTTGGACTGTGTTTTGTAG
Protein sequenceShow/hide protein sequence
MFRIGGRKLCVLCHRFPESGLHVFWYCKDLRSFAADYVQSSRSARCSRVSTGFKGSNVSSVPPSRTQWVAPVGCDLKLNTDAAYHGDTRTAGAICVLQDASGRGFTRLQI
EFDSLRVVRLLTKEVEDISEVGALMDLVLQMFPRGHFGGASFTSRDGNRVAHKLAQMAMESPLKRVWVGECPDRISSLVFLDCVL