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Lag0016203 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0016203
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr12:34689787..34690783
RNA-Seq ExpressionLag0016203
SyntenyLag0016203
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022145060.1 uncharacterized protein LOC111014578 [Momordica charantia]1.8e-0730.88Show/hide
Query:  PRATPSDVQNWYESDRWLCMGDQQWIKHLDLICVGAWAIWNDRNNVIHNRPVPPIDIRCMWIIDYMSEYKTSNWRNPKWQQSIEDIQSFLSETEK-----
        P+A P    N    D  L + +       DL+ VG WAIWNDRN +   R +P   IR  WI+ Y+ +++  +  +    +  ED  S     E      
Subjt:  PRATPSDVQNWYESDRWLCMGDQQWIKHLDLICVGAWAIWNDRNNVIHNRPVPPIDIRCMWIIDYMSEYKTSNWRNPKWQQSIEDIQSFLSETEK-----

Query:  ----VVIHADAACYPISRKADIGVVIRDSNGQLIAA
            + I+ DAAC     +  IG+V R+  GQ++AA
Subjt:  ----VVIHADAACYPISRKADIGVVIRDSNGQLIAA

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]4.3e-0930.43Show/hide
Query:  WLCMGDQQWIKHLDLICVGAWAIWNDRNNVIHNRPVPPIDIRCMWIIDYMSEYKTSNWRN--PKWQQSIEDIQSFL--SETEKVVIHADAACYPISRKAD
        W  + +Q   K L+L  +  W IWNDRN++IH + V P++ +C W+  ++  +  +   N  P+ Q +   +  +   S +  + ++ DAAC   S    
Subjt:  WLCMGDQQWIKHLDLICVGAWAIWNDRNNVIHNRPVPPIDIRCMWIIDYMSEYKTSNWRN--PKWQQSIEDIQSFL--SETEKVVIHADAACYPISRKAD

Query:  IGVVIRDSNGQLIAA
         G +IRDS+  L+AA
Subjt:  IGVVIRDSNGQLIAA

XP_023891683.1 uncharacterized protein LOC112003714 [Quercus suber]5.3e-0727.35Show/hide
Query:  WLCMGDQQWIKH-LDLICVGAWAIWNDRNNVIHNRPVPPIDIRCMWIIDYMSEYKTSNWRNPKWQQSIEDIQSFLSETEKVVIHADAACYPISRKADIGV
        W     +QW++  + L+ + AW IW +RN V H +   P  +   WI +Y+ +Y  +N     +++S +    F  +      + D A +   R+A +GV
Subjt:  WLCMGDQQWIKH-LDLICVGAWAIWNDRNNVIHNRPVPPIDIRCMWIIDYMSEYKTSNWRNPKWQQSIEDIQSFLSETEKVVIHADAACYPISRKADIGV

Query:  VIRDSNGQLIAAMHNAL
        +IRD  G ++A +   L
Subjt:  VIRDSNGQLIAAMHNAL

XP_023906534.1 uncharacterized protein LOC112018253 [Quercus suber]3.1e-0729.91Show/hide
Query:  WLCMGDQQWIKH-LDLICVGAWAIWNDRNNVIHNRPVPPIDIRCMWIIDYMSEYKTSNWRNPKWQQSIEDIQSFLSETEKVVIHADAACYPISRKADIGV
        W     ++W +  + L+   AW IW +RN V H R      +   W  +Y+ EY T+N     +++S+E +   L +     ++ D+A +   ++A IGV
Subjt:  WLCMGDQQWIKH-LDLICVGAWAIWNDRNNVIHNRPVPPIDIRCMWIIDYMSEYKTSNWRNPKWQQSIEDIQSFLSETEKVVIHADAACYPISRKADIGV

Query:  VIRDSNGQLIAAMHNAL
        VIRD +G ++AA+   L
Subjt:  VIRDSNGQLIAAMHNAL

XP_030931239.1 uncharacterized protein LOC115957159 [Quercus lobata]2.0e-0629.2Show/hide
Query:  WLCMGDQQWIKH-LDLICVGAWAIWNDRNNVIHNRPVPPIDIRCMWIIDYMSEYKTSNWRNPKWQQSIEDIQSFLSETEKVVIHADAACYPISRKADIGV
        W     ++W +  + L+ + AW IW + N V H R   P  IR  W  +Y+ +Y T+N     +++S+E +   L +      + D+A +   ++  I V
Subjt:  WLCMGDQQWIKH-LDLICVGAWAIWNDRNNVIHNRPVPPIDIRCMWIIDYMSEYKTSNWRNPKWQQSIEDIQSFLSETEKVVIHADAACYPISRKADIGV

Query:  VIRDSNGQLIAAM
        VIRD +G ++AA+
Subjt:  VIRDSNGQLIAAM

TrEMBL top hitse value%identityAlignment
A0A6J1CTE3 uncharacterized protein LOC1110145788.8e-0830.88Show/hide
Query:  PRATPSDVQNWYESDRWLCMGDQQWIKHLDLICVGAWAIWNDRNNVIHNRPVPPIDIRCMWIIDYMSEYKTSNWRNPKWQQSIEDIQSFLSETEK-----
        P+A P    N    D  L + +       DL+ VG WAIWNDRN +   R +P   IR  WI+ Y+ +++  +  +    +  ED  S     E      
Subjt:  PRATPSDVQNWYESDRWLCMGDQQWIKHLDLICVGAWAIWNDRNNVIHNRPVPPIDIRCMWIIDYMSEYKTSNWRNPKWQQSIEDIQSFLSETEK-----

Query:  ----VVIHADAACYPISRKADIGVVIRDSNGQLIAA
            + I+ DAAC     +  IG+V R+  GQ++AA
Subjt:  ----VVIHADAACYPISRKADIGVVIRDSNGQLIAA

A0A6J1DX30 uncharacterized protein LOC1110248742.1e-0930.43Show/hide
Query:  WLCMGDQQWIKHLDLICVGAWAIWNDRNNVIHNRPVPPIDIRCMWIIDYMSEYKTSNWRN--PKWQQSIEDIQSFL--SETEKVVIHADAACYPISRKAD
        W  + +Q   K L+L  +  W IWNDRN++IH + V P++ +C W+  ++  +  +   N  P+ Q +   +  +   S +  + ++ DAAC   S    
Subjt:  WLCMGDQQWIKHLDLICVGAWAIWNDRNNVIHNRPVPPIDIRCMWIIDYMSEYKTSNWRN--PKWQQSIEDIQSFL--SETEKVVIHADAACYPISRKAD

Query:  IGVVIRDSNGQLIAA
         G +IRDS+  L+AA
Subjt:  IGVVIRDSNGQLIAA

A0A7J8LI70 RNase H domain-containing protein (Fragment)1.8e-0531.93Show/hide
Query:  MGDQQWI---------KHLDLICVGAWAIWNDRNNVIHNRPVPPIDIRCMWIIDYMSEY----KTSNWRNPKWQQSIEDIQSFLSETEKVVIHADAACYP
        MG +QW+          H  + CV  WAIW DRNN +HN+          ++I Y+SE     KTS   +   ++ ++   SF+       I+ DAA   
Subjt:  MGDQQWI---------KHLDLICVGAWAIWNDRNNVIHNRPVPPIDIRCMWIIDYMSEY----KTSNWRNPKWQQSIEDIQSFLSETEKVVIHADAACYP

Query:  ISRKADIGVVIRDSNGQLI
           KA IGVV R+  G ++
Subjt:  ISRKADIGVVIRDSNGQLI

A0A7J9IAD6 RNase H domain-containing protein7.0e-0531.67Show/hide
Query:  MGDQQWI---------KHLDLICVGAWAIWNDRNNVIHNRPVPPIDIRCMWIIDYMSEY----KTSNWRNPKWQQSIEDIQSFLSETEKVV-IHADAACY
        MG +QW+          +  + CV  WAIW DRNN +HN+          ++I Y+SE     KTS       +QS   ++ ++  T+  + I+ DAA  
Subjt:  MGDQQWI---------KHLDLICVGAWAIWNDRNNVIHNRPVPPIDIRCMWIIDYMSEY----KTSNWRNPKWQQSIEDIQSFLSETEKVV-IHADAACY

Query:  PISRKADIGVVIRDSNGQLI
            KA IGVV R+  G ++
Subjt:  PISRKADIGVVIRDSNGQLI

A0A7N2LJB8 RNase H domain-containing protein1.7e-0628.21Show/hide
Query:  WLCMGDQQWIKH-LDLICVGAWAIWNDRNNVIHNRPVPPIDIRCMWIIDYMSEYKTSNWRNPKWQQSIEDIQSFLSETEKVVIHADAACYPISRKADIGV
        W     +QW +  + L+ + AW IW +RN V H +   P  +   W   Y+ +Y  +N     +++S E +   L +      + D A +   ++A +GV
Subjt:  WLCMGDQQWIKH-LDLICVGAWAIWNDRNNVIHNRPVPPIDIRCMWIIDYMSEYKTSNWRNPKWQQSIEDIQSFLSETEKVVIHADAACYPISRKADIGV

Query:  VIRDSNGQLIAAMHNAL
        VIRD  G ++AA+   L
Subjt:  VIRDSNGQLIAAMHNAL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAATTACCGCTGAGCTAAGCTCGCTTTGGCAACGTGGAGGTTCTCCTAGGGCTACGCCTTCTGATGTTCAGAATTGGTATGAATCTGACCGGTGGCTTTGTATGGG
TGACCAGCAATGGATAAAACACCTTGATCTTATATGTGTAGGGGCTTGGGCTATTTGGAATGATAGGAACAACGTCATCCACAATAGACCAGTGCCCCCGATTGATATCC
GTTGCATGTGGATTATCGACTACATGTCAGAATATAAGACATCTAATTGGAGAAACCCTAAATGGCAACAAAGTATTGAGGATATACAATCTTTTCTGTCAGAAACGGAA
AAAGTGGTTATTCATGCGGATGCTGCCTGTTATCCTATCAGTCGTAAAGCAGATATTGGTGTGGTGATTCGAGACTCCAATGGCCAATTGATAGCTGCCATGCATAACGC
CCTTGATATCTCCAATATGTGCAGAATCATATGCTATTTTAGAAGAGCTTCGTTTGGGTCAAAGGAAGGGATTCAAACGCATTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCAATTACCGCTGAGCTAAGCTCGCTTTGGCAACGTGGAGGTTCTCCTAGGGCTACGCCTTCTGATGTTCAGAATTGGTATGAATCTGACCGGTGGCTTTGTATGGG
TGACCAGCAATGGATAAAACACCTTGATCTTATATGTGTAGGGGCTTGGGCTATTTGGAATGATAGGAACAACGTCATCCACAATAGACCAGTGCCCCCGATTGATATCC
GTTGCATGTGGATTATCGACTACATGTCAGAATATAAGACATCTAATTGGAGAAACCCTAAATGGCAACAAAGTATTGAGGATATACAATCTTTTCTGTCAGAAACGGAA
AAAGTGGTTATTCATGCGGATGCTGCCTGTTATCCTATCAGTCGTAAAGCAGATATTGGTGTGGTGATTCGAGACTCCAATGGCCAATTGATAGCTGCCATGCATAACGC
CCTTGATATCTCCAATATGTGCAGAATCATATGCTATTTTAGAAGAGCTTCGTTTGGGTCAAAGGAAGGGATTCAAACGCATTAA
Protein sequenceShow/hide protein sequence
MPITAELSSLWQRGGSPRATPSDVQNWYESDRWLCMGDQQWIKHLDLICVGAWAIWNDRNNVIHNRPVPPIDIRCMWIIDYMSEYKTSNWRNPKWQQSIEDIQSFLSETE
KVVIHADAACYPISRKADIGVVIRDSNGQLIAAMHNALDISNMCRIICYFRRASFGSKEGIQTH