; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0016212 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0016212
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr12:34790385..34797451
RNA-Seq ExpressionLag0016212
SyntenyLag0016212
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022135942.1 uncharacterized protein LOC111007775 [Momordica charantia]1.4e-1939.13Show/hide
Query:  LVDWAVNYLAVFRRASR-----TYCEGFGGAPRSAAKWSPPEEGWYKANVDAAYCGDLFRAGAGVVVRDEVGRVMLSAVVSHDCCLVQNLAEGLAVVDGL
        +VDW  +YL V++ A          +G GG     + W PP   ++K NVDAA+    F AG  +++RD    V+LSA+          LAE LA  +G+
Subjt:  LVDWAVNYLAVFRRASR-----TYCEGFGGAPRSAAKWSPPEEGWYKANVDAAYCGDLFRAGAGVVVRDEVGRVMLSAVVSHDCCLVQNLAEGLAVVDGL

Query:  RLVVEMGLAPVILETDSMRAFSLLQDSAMVDLSEFGVLVSEVRREVSA-HIQHKFSFTKREGNCVAHELARFAMREGGLEIEIE
         L +E GL P  +ETDS + F+LL+     D SE GVL S +R  VS+ HI   FSF  REGN  AH LAR  M      + +E
Subjt:  RLVVEMGLAPVILETDSMRAFSLLQDSAMVDLSEFGVLVSEVRREVSA-HIQHKFSFTKREGNCVAHELARFAMREGGLEIEIE

XP_022139684.1 uncharacterized protein LOC111010533 [Momordica charantia]6.0e-1833.51Show/hide
Query:  RVPSAGLVDWAVNYLAVFRRASRTYCEGFGGAPRSAAK------------WSPPEEGWYKANVDAAYCGDLFRAGAGV-VVRDEVGRVMLSAVVSHDCCL
        RV    L  W   Y+A F+  +  +        +S  +            W P EEG +K   DA++    F AG GV ++RD  G+V+ SA    +   
Subjt:  RVPSAGLVDWAVNYLAVFRRASRTYCEGFGGAPRSAAK------------WSPPEEGWYKANVDAAYCGDLFRAGAGV-VVRDEVGRVMLSAVVSHDCCL

Query:  VQNLAEGLAVVDGLRLVVEMGLAPVILETDSMRAFSLLQDSAMVDLSEFGVLVSEVRREVSAHIQHKFSFTKREGNCVAHELARFAMR
          + AE LA V+GLR+ +E G++P++LETDS+R ++L        LS+ G ++  V+  ++  +Q  +SFTKR GN +AH LAR A++
Subjt:  VQNLAEGLAVVDGLRLVVEMGLAPVILETDSMRAFSLLQDSAMVDLSEFGVLVSEVRREVSAHIQHKFSFTKREGNCVAHELARFAMR

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]4.1e-1937.16Show/hide
Query:  LVDWAVNYLAVFRRASRTYCEGFGGAPRSAAK--WSPPEEGWYKANVDAAYCGDLFRAGAGVVVRDEVGRVMLSAVVSHDCCLVQNLAEGLAVVDGLRLV
        LV+WA  Y+  FR A+      F G   + A+  W PP++  YK N DA++      AG G+++R++ G+VM SA    +     ++AE +  V+GL+L 
Subjt:  LVDWAVNYLAVFRRASRTYCEGFGGAPRSAAK--WSPPEEGWYKANVDAAYCGDLFRAGAGVVVRDEVGRVMLSAVVSHDCCLVQNLAEGLAVVDGLRLV

Query:  VEMGLAPVILETDSMRAFSLLQDSAMVDLSEFGVLVSEVRREVSAHIQHKFSFTKREGNCVAHELARFAMREGGLEIEIESEP
         ++G+ PVILETDS R F+L    +  DLSE G +V + +   +  +   F+F KREGN  AH LAR A+      I +E  P
Subjt:  VEMGLAPVILETDSMRAFSLLQDSAMVDLSEFGVLVSEVRREVSAHIQHKFSFTKREGNCVAHELARFAMREGGLEIEIESEP

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]3.4e-2140.44Show/hide
Query:  LVDWAVNYLAVFRRASRTYCEGFGGA-PRSAAKWSPPEEGWYKANVDAAYCGDLFRAGAGVVVRDEVGRVMLSAVVSHDCCLVQNLAEGLAVVDGLRLVV
        LV W+ NYL V++ A R+         P   A W PP     K NVDAA+  + F AG GV++RD  G V L+A+         +  EG AV +G+ L V
Subjt:  LVDWAVNYLAVFRRASRTYCEGFGGA-PRSAAKWSPPEEGWYKANVDAAYCGDLFRAGAGVVVRDEVGRVMLSAVVSHDCCLVQNLAEGLAVVDGLRLVV

Query:  EMGLAPVILETDSMRAFSLLQDSAMVDLSEFGVLVSEVRREVSAHIQH-KFSFTKREGNCVAHELARFAMREGGLEIEIESEP
        E G     +ETDS+R F+LL     VD SE GVL S ++  +S+H +   FSFT R GN  AH LA+ A+    L+I +E  P
Subjt:  EMGLAPVILETDSMRAFSLLQDSAMVDLSEFGVLVSEVRREVSAHIQH-KFSFTKREGNCVAHELARFAMREGGLEIEIESEP

XP_023928856.1 uncharacterized protein LOC112040187 [Quercus suber]2.5e-1640.24Show/hide
Query:  FGGAP--RSAAKWSPPEEGWYKANVDAAYCGDLFRAGAGVVVRDEVGRVMLSAVVSHDCCLVQNLA--EGLAVVDGLRLVVEMGLAPVILETDSMRAFSL
        F  AP  R  A+W+PP  GW+KAN DAA   D+ RAG GV+ RD  G  M+S  ++ +  LV ++A  E LA    L L  E+G   VI E DS    + 
Subjt:  FGGAP--RSAAKWSPPEEGWYKANVDAAYCGDLFRAGAGVVVRDEVGRVMLSAVVSHDCCLVQNLA--EGLAVVDGLRLVVEMGLAPVILETDSMRAFSL

Query:  LQDSAMVDLSEFGVLVSEVRREVSAHIQH-KFSFTKREGNCVAHELARFAMREGGLEIEIESEP
        L D     L+ FG+L+ E  ++++  + H KF    REGN VAH LAR A    G  + +E  P
Subjt:  LQDSAMVDLSEFGVLVSEVRREVSAHIQH-KFSFTKREGNCVAHELARFAMREGGLEIEIESEP

TrEMBL top hitse value%identityAlignment
A0A5C7IIT4 Uncharacterized protein1.0e-1532.99Show/hide
Query:  MHQKFRGRVPSAGLVDWAVNYLAVFRRASRTYCEGFGGAPRSAAKWSPPEEGWYKANVDAAYCGDLFRAGAGVVVRDEVGRVMLSAVVSHDCCLVQNLAE
        +++K    V    ++DWA +++  F +A++T   G     R A KW P   G YK N DA         G GVV+RD  G VM S   S    L     E
Subjt:  MHQKFRGRVPSAGLVDWAVNYLAVFRRASRTYCEGFGGAPRSAAKWSPPEEGWYKANVDAAYCGDLFRAGAGVVVRDEVGRVMLSAVVSHDCCLVQNLAE

Query:  GLAVVDGLRLVVEMGLAPVILETDSMRAFSLLQDSAMVDLSEFGVLVSEVRREVSAHIQHKFSFTKREGNCVAHELARFAMREGGLEIEIESEP
         +AV+ G RL +E GL P  +E+DS+   +L+ +S  +  +E GV++ ++    S       SF  R  NCVAH LA+ ++   G  + +E  P
Subjt:  GLAVVDGLRLVVEMGLAPVILETDSMRAFSLLQDSAMVDLSEFGVLVSEVRREVSAHIQHKFSFTKREGNCVAHELARFAMREGGLEIEIESEP

A0A6J1C467 uncharacterized protein LOC1110077756.9e-2039.13Show/hide
Query:  LVDWAVNYLAVFRRASR-----TYCEGFGGAPRSAAKWSPPEEGWYKANVDAAYCGDLFRAGAGVVVRDEVGRVMLSAVVSHDCCLVQNLAEGLAVVDGL
        +VDW  +YL V++ A          +G GG     + W PP   ++K NVDAA+    F AG  +++RD    V+LSA+          LAE LA  +G+
Subjt:  LVDWAVNYLAVFRRASR-----TYCEGFGGAPRSAAKWSPPEEGWYKANVDAAYCGDLFRAGAGVVVRDEVGRVMLSAVVSHDCCLVQNLAEGLAVVDGL

Query:  RLVVEMGLAPVILETDSMRAFSLLQDSAMVDLSEFGVLVSEVRREVSA-HIQHKFSFTKREGNCVAHELARFAMREGGLEIEIE
         L +E GL P  +ETDS + F+LL+     D SE GVL S +R  VS+ HI   FSF  REGN  AH LAR  M      + +E
Subjt:  RLVVEMGLAPVILETDSMRAFSLLQDSAMVDLSEFGVLVSEVRREVSA-HIQHKFSFTKREGNCVAHELARFAMREGGLEIEIE

A0A6J1CDQ4 uncharacterized protein LOC1110105332.9e-1833.51Show/hide
Query:  RVPSAGLVDWAVNYLAVFRRASRTYCEGFGGAPRSAAK------------WSPPEEGWYKANVDAAYCGDLFRAGAGV-VVRDEVGRVMLSAVVSHDCCL
        RV    L  W   Y+A F+  +  +        +S  +            W P EEG +K   DA++    F AG GV ++RD  G+V+ SA    +   
Subjt:  RVPSAGLVDWAVNYLAVFRRASRTYCEGFGGAPRSAAK------------WSPPEEGWYKANVDAAYCGDLFRAGAGV-VVRDEVGRVMLSAVVSHDCCL

Query:  VQNLAEGLAVVDGLRLVVEMGLAPVILETDSMRAFSLLQDSAMVDLSEFGVLVSEVRREVSAHIQHKFSFTKREGNCVAHELARFAMR
          + AE LA V+GLR+ +E G++P++LETDS+R ++L        LS+ G ++  V+  ++  +Q  +SFTKR GN +AH LAR A++
Subjt:  VQNLAEGLAVVDGLRLVVEMGLAPVILETDSMRAFSLLQDSAMVDLSEFGVLVSEVRREVSAHIQHKFSFTKREGNCVAHELARFAMR

A0A6J1CIF1 uncharacterized protein LOC1110112372.0e-1937.16Show/hide
Query:  LVDWAVNYLAVFRRASRTYCEGFGGAPRSAAK--WSPPEEGWYKANVDAAYCGDLFRAGAGVVVRDEVGRVMLSAVVSHDCCLVQNLAEGLAVVDGLRLV
        LV+WA  Y+  FR A+      F G   + A+  W PP++  YK N DA++      AG G+++R++ G+VM SA    +     ++AE +  V+GL+L 
Subjt:  LVDWAVNYLAVFRRASRTYCEGFGGAPRSAAK--WSPPEEGWYKANVDAAYCGDLFRAGAGVVVRDEVGRVMLSAVVSHDCCLVQNLAEGLAVVDGLRLV

Query:  VEMGLAPVILETDSMRAFSLLQDSAMVDLSEFGVLVSEVRREVSAHIQHKFSFTKREGNCVAHELARFAMREGGLEIEIESEP
         ++G+ PVILETDS R F+L    +  DLSE G +V + +   +  +   F+F KREGN  AH LAR A+      I +E  P
Subjt:  VEMGLAPVILETDSMRAFSLLQDSAMVDLSEFGVLVSEVRREVSAHIQHKFSFTKREGNCVAHELARFAMREGGLEIEIESEP

A0A6J1DBJ7 uncharacterized protein LOC1110189731.6e-2140.44Show/hide
Query:  LVDWAVNYLAVFRRASRTYCEGFGGA-PRSAAKWSPPEEGWYKANVDAAYCGDLFRAGAGVVVRDEVGRVMLSAVVSHDCCLVQNLAEGLAVVDGLRLVV
        LV W+ NYL V++ A R+         P   A W PP     K NVDAA+  + F AG GV++RD  G V L+A+         +  EG AV +G+ L V
Subjt:  LVDWAVNYLAVFRRASRTYCEGFGGA-PRSAAKWSPPEEGWYKANVDAAYCGDLFRAGAGVVVRDEVGRVMLSAVVSHDCCLVQNLAEGLAVVDGLRLVV

Query:  EMGLAPVILETDSMRAFSLLQDSAMVDLSEFGVLVSEVRREVSAHIQH-KFSFTKREGNCVAHELARFAMREGGLEIEIESEP
        E G     +ETDS+R F+LL     VD SE GVL S ++  +S+H +   FSFT R GN  AH LA+ A+    L+I +E  P
Subjt:  EMGLAPVILETDSMRAFSLLQDSAMVDLSEFGVLVSEVRREVSAHIQH-KFSFTKREGNCVAHELARFAMREGGLEIEIESEP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein8.9e-0425.77Show/hide
Query:  ASRTYCEGFGGAPR----SAAKWSPPEEGWYKANVDAAYCGDLFRAGAGVVVRDEVGRVMLSAVVSHDCCLVQNLAEGLAVVDGLRLVV----EMGLAPV
        ++R   EG    P+     + +W  P   W K N DA +  +  R G G ++R+E G V+     +      +N+ E  A ++ LR  V          +
Subjt:  ASRTYCEGFGGAPR----SAAKWSPPEEGWYKANVDAAYCGDLFRAGAGVVVRDEVGRVMLSAVVSHDCCLVQNLAEGLAVVDGLRLVV----EMGLAPV

Query:  ILETDSMRAFSLLQDSAMVDLSEFGVLVSEVRREVSAHIQH----KFSFTKREGNCVAHELAR
        I E+D+    +LL         +F   +     ++   + H    KF FT R GN VA  +AR
Subjt:  ILETDSMRAFSLLQDSAMVDLSEFGVLVSEVRREVSAHIQH----KFSFTKREGNCVAHELAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTCTCTCCCAGTTCTCATCGTTGCCTCCATCTCATCTCAAATCTCTATCTCACAAGGTCGCTCGTCGTCGCCTCGCCTCCCTCGACCTCATCGTCGTCGTCGCCA
TCCTCATTTCGTCTCAATCTCTATTCTCACTTCTCCCTCGCCTGTCTCACACTCTCTGTTTCGAATTCTTCATCACGCCGTCTCTCTCTCCCTTTGGCCTCGTCATCGTC
ATCGTCATCCTCATGTCTTCTCGATCTCTATTCTCACTTCTCCCTCACGCCGTCTCTCACTCTCTGTTATGAGTTCTTCCTCACATCGTCTTTCCCTCTCCCTTGGCCTC
GTCATCGTCGTCTCTCTATTTTTCGTCTCCCTCATCGTCATCAGGTTCTCATCTCCCTCAAACCCTCGAGCAAGCAACCAAGCACTGCAAATCGAGGAAATAAAAGAGAA
AGGAGAAGGGGAAAAGGGAGAAGAAGGAAAGACAAAAGAAAAAATGGAGACAACGACGACAATGGAGGGCAGCAGTGGCGAGCGGTGGCAGCGTGGACGGTGGTGGATGG
GCATGCATCAGAAGTTTAGGGGGCGGGTTCCTTCAGCAGGACTTGTGGATTGGGCGGTGAACTACCTGGCTGTTTTTCGAAGGGCCTCTCGAACCTATTGTGAGGGGTTT
GGAGGAGCGCCTCGGAGTGCAGCAAAATGGTCCCCGCCGGAGGAGGGATGGTATAAGGCGAACGTGGATGCGGCATATTGTGGGGATCTGTTTCGAGCGGGTGCTGGAGT
TGTTGTTCGGGATGAGGTAGGGCGAGTCATGCTGTCAGCTGTTGTTAGCCATGACTGTTGCCTTGTGCAAAACTTGGCAGAGGGTCTGGCGGTGGTGGACGGATTGAGAC
TTGTGGTGGAGATGGGTTTAGCTCCAGTTATCCTTGAGACTGATTCTATGCGGGCTTTTTCGCTGTTACAAGATTCTGCGATGGTGGATCTGTCTGAGTTCGGTGTTCTA
GTTTCTGAGGTTCGAAGGGAGGTGTCTGCACATATTCAGCACAAATTCAGCTTTACAAAAAGGGAAGGAAACTGTGTTGCCCATGAGTTAGCCCGCTTTGCAATGAGAGA
GGGAGGCTTGGAGATCGAGATTGAAAGCGAACCAAAGAACCATTTATTTGGAAAGGTGACCAGCCTGAGCAGCGAAAGTCATTACCCAATACCATCGTGCAGATATCAGG
GAAGGTCTTCTGTTCCCCATGCTCTGGATCCTTATGTGGTTACTTTGTGGTCTGTTGATAACTACCCAAAAGATTATGCTGCTGAGCGACTGGAGGGAGCAAATTCTATG
CTGCAGCAAAACTGGGAACAGGACTGCCACATCACAGCTCGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGTCTCTCCCAGTTCTCATCGTTGCCTCCATCTCATCTCAAATCTCTATCTCACAAGGTCGCTCGTCGTCGCCTCGCCTCCCTCGACCTCATCGTCGTCGTCGCCA
TCCTCATTTCGTCTCAATCTCTATTCTCACTTCTCCCTCGCCTGTCTCACACTCTCTGTTTCGAATTCTTCATCACGCCGTCTCTCTCTCCCTTTGGCCTCGTCATCGTC
ATCGTCATCCTCATGTCTTCTCGATCTCTATTCTCACTTCTCCCTCACGCCGTCTCTCACTCTCTGTTATGAGTTCTTCCTCACATCGTCTTTCCCTCTCCCTTGGCCTC
GTCATCGTCGTCTCTCTATTTTTCGTCTCCCTCATCGTCATCAGGTTCTCATCTCCCTCAAACCCTCGAGCAAGCAACCAAGCACTGCAAATCGAGGAAATAAAAGAGAA
AGGAGAAGGGGAAAAGGGAGAAGAAGGAAAGACAAAAGAAAAAATGGAGACAACGACGACAATGGAGGGCAGCAGTGGCGAGCGGTGGCAGCGTGGACGGTGGTGGATGG
GCATGCATCAGAAGTTTAGGGGGCGGGTTCCTTCAGCAGGACTTGTGGATTGGGCGGTGAACTACCTGGCTGTTTTTCGAAGGGCCTCTCGAACCTATTGTGAGGGGTTT
GGAGGAGCGCCTCGGAGTGCAGCAAAATGGTCCCCGCCGGAGGAGGGATGGTATAAGGCGAACGTGGATGCGGCATATTGTGGGGATCTGTTTCGAGCGGGTGCTGGAGT
TGTTGTTCGGGATGAGGTAGGGCGAGTCATGCTGTCAGCTGTTGTTAGCCATGACTGTTGCCTTGTGCAAAACTTGGCAGAGGGTCTGGCGGTGGTGGACGGATTGAGAC
TTGTGGTGGAGATGGGTTTAGCTCCAGTTATCCTTGAGACTGATTCTATGCGGGCTTTTTCGCTGTTACAAGATTCTGCGATGGTGGATCTGTCTGAGTTCGGTGTTCTA
GTTTCTGAGGTTCGAAGGGAGGTGTCTGCACATATTCAGCACAAATTCAGCTTTACAAAAAGGGAAGGAAACTGTGTTGCCCATGAGTTAGCCCGCTTTGCAATGAGAGA
GGGAGGCTTGGAGATCGAGATTGAAAGCGAACCAAAGAACCATTTATTTGGAAAGGTGACCAGCCTGAGCAGCGAAAGTCATTACCCAATACCATCGTGCAGATATCAGG
GAAGGTCTTCTGTTCCCCATGCTCTGGATCCTTATGTGGTTACTTTGTGGTCTGTTGATAACTACCCAAAAGATTATGCTGCTGAGCGACTGGAGGGAGCAAATTCTATG
CTGCAGCAAAACTGGGAACAGGACTGCCACATCACAGCTCGTTAG
Protein sequenceShow/hide protein sequence
MSSLPVLIVASISSQISISQGRSSSPRLPRPHRRRRHPHFVSISILTSPSPVSHSLFRILHHAVSLSLWPRHRHRHPHVFSISILTSPSRRLSLSVMSSSSHRLSLSLGL
VIVVSLFFVSLIVIRFSSPSNPRASNQALQIEEIKEKGEGEKGEEGKTKEKMETTTTMEGSSGERWQRGRWWMGMHQKFRGRVPSAGLVDWAVNYLAVFRRASRTYCEGF
GGAPRSAAKWSPPEEGWYKANVDAAYCGDLFRAGAGVVVRDEVGRVMLSAVVSHDCCLVQNLAEGLAVVDGLRLVVEMGLAPVILETDSMRAFSLLQDSAMVDLSEFGVL
VSEVRREVSAHIQHKFSFTKREGNCVAHELARFAMREGGLEIEIESEPKNHLFGKVTSLSSESHYPIPSCRYQGRSSVPHALDPYVVTLWSVDNYPKDYAAERLEGANSM
LQQNWEQDCHITAR