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Lag0016229 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0016229
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr12:35051748..35053024
RNA-Seq ExpressionLag0016229
SyntenyLag0016229
Gene Ontology termsGO:0044237 - cellular metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036760.1 putative mitochondrial protein [Cucumis melo var. makuwa]3.0e-1332.78Show/hide
Query:  SQISQAISLGNKNSTVKLTDENFLMWKFQILTTLEGHELEGHISVECEPPPK-----------------------------------------TIQDVIT
        S ISQ     +K S VKL D+N + WKFQILT LE ++LE ++    +PP K                                         ++QD+++
Subjt:  SQISQAISLGNKNSTVKLTDENFLMWKFQILTTLEGHELEGHISVECEPPPK-----------------------------------------TIQDVIT

Query:  FLLTHESRIKS-KANSDGVL-------PSANLTIQNPGQKEDWNWYPDLGATNHLINSLGNMSVSSDYLGNNQVLIGNGA
         LLT ES+I+S  ANS           P  +  + +     D NWYP+LGATNHLI++L N+S  S+Y G + +   NG+
Subjt:  FLLTHESRIKS-KANSDGVL-------PSANLTIQNPGQKEDWNWYPDLGATNHLINSLGNMSVSSDYLGNNQVLIGNGA

KAA0068024.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.3e-2034.27Show/hide
Query:  KNSEISHASQISQAISLGNKNSTVKLTDENFLMWKFQILTTLEGHELEGHISVECEPPPKTIQDVITFLLT---------HESRIKSKANSDGVLPSANL
        +N+E S  S I+Q    GNK S VKL D+NFL+WKFQILT LE +++E  +  E EPP K +    +   +          ES+ +SK  S+  LPS N+
Subjt:  KNSEISHASQISQAISLGNKNSTVKLTDENFLMWKFQILTTLEGHELEGHISVECEPPPKTIQDVITFLLT---------HESRIKSKANSDGVLPSANL

Query:  TIQNP---------------------------------------------------GQKEDWNWYPDLGATNHLINSLGNMSVSSDYLGNNQVLIGNGAS
          Q                                                     G   D NWYPD GATNHL +SL N+S  S+Y G NQ+   NG+ 
Subjt:  TIQNP---------------------------------------------------GQKEDWNWYPDLGATNHLINSLGNMSVSSDYLGNNQVLIGNGAS

Query:  LPISKLGYASFTS
        LPI+  G  SF S
Subjt:  LPISKLGYASFTS

TYJ95829.1 putative copia-like retrotransposon Hopscotch polyprotein [Cucumis melo var. makuwa]3.2e-1531.9Show/hide
Query:  SQISQAISLGNKNSTVKLTDENFLMWKFQILTTLEGHELEGHISVECEPPPK------------------------------------------------
        S ISQ    G+K S VKL D+N + WKFQILT LE ++LE ++    +PP K                                                
Subjt:  SQISQAISLGNKNSTVKLTDENFLMWKFQILTTLEGHELEGHISVECEPPPK------------------------------------------------

Query:  -------------TIQDVITFLLTHESRIKSKANSDGVLPSANLTIQNPG----QKE--------------DWNWYPDLGATNHLINSLGNMSVSSDYLG
                     ++QD+++ LLT ES+I+SK  SD  LP+ N+T QN      +KE              D NWYP+LGATNHLI++L N+S  S+Y G
Subjt:  -------------TIQDVITFLLTHESRIKSKANSDGVLPSANLTIQNPG----QKE--------------DWNWYPDLGATNHLINSLGNMSVSSDYLG

Query:  NNQVLIGNGA
         + +   NG+
Subjt:  NNQVLIGNGA

XP_022148749.1 uncharacterized protein LOC111017341 isoform X1 [Momordica charantia]3.0e-1353.76Show/hide
Query:  LETSKNSEI----SHASQISQAISLGNKNSTVKLTDENFLMWKFQILTTLEGHELEGHISVECEPPPKTIQ--DVITFLLT--HESRIKSKAN
        +++S N+EI    ++  Q SQ I+ GNK STVKLTDENFL+WKFQ+LTTLEGH LE +I  + +PPPK IQ  DV+T  L+  + +R+K K N
Subjt:  LETSKNSEI----SHASQISQAISLGNKNSTVKLTDENFLMWKFQILTTLEGHELEGHISVECEPPPKTIQ--DVITFLLT--HESRIKSKAN

XP_022148750.1 uncharacterized protein LOC111017341 isoform X2 [Momordica charantia]3.0e-1358.67Show/hide
Query:  LETSKNSEI----SHASQISQAISLGNKNSTVKLTDENFLMWKFQILTTLEGHELEGHISVECEPPPKTIQDVIT
        +++S N+EI    ++  Q SQ I+ GNK STVKLTDENFL+WKFQ+LTTLEGH LE +I  + +PPPK IQD +T
Subjt:  LETSKNSEI----SHASQISQAISLGNKNSTVKLTDENFLMWKFQILTTLEGHELEGHISVECEPPPKTIQDVIT

TrEMBL top hitse value%identityAlignment
A0A5A7T077 Putative mitochondrial protein1.5e-1332.78Show/hide
Query:  SQISQAISLGNKNSTVKLTDENFLMWKFQILTTLEGHELEGHISVECEPPPK-----------------------------------------TIQDVIT
        S ISQ     +K S VKL D+N + WKFQILT LE ++LE ++    +PP K                                         ++QD+++
Subjt:  SQISQAISLGNKNSTVKLTDENFLMWKFQILTTLEGHELEGHISVECEPPPK-----------------------------------------TIQDVIT

Query:  FLLTHESRIKS-KANSDGVL-------PSANLTIQNPGQKEDWNWYPDLGATNHLINSLGNMSVSSDYLGNNQVLIGNGA
         LLT ES+I+S  ANS           P  +  + +     D NWYP+LGATNHLI++L N+S  S+Y G + +   NG+
Subjt:  FLLTHESRIKS-KANSDGVL-------PSANLTIQNPGQKEDWNWYPDLGATNHLINSLGNMSVSSDYLGNNQVLIGNGA

A0A5D3B9Z0 Putative copia-like retrotransposon Hopscotch polyprotein1.6e-1531.9Show/hide
Query:  SQISQAISLGNKNSTVKLTDENFLMWKFQILTTLEGHELEGHISVECEPPPK------------------------------------------------
        S ISQ    G+K S VKL D+N + WKFQILT LE ++LE ++    +PP K                                                
Subjt:  SQISQAISLGNKNSTVKLTDENFLMWKFQILTTLEGHELEGHISVECEPPPK------------------------------------------------

Query:  -------------TIQDVITFLLTHESRIKSKANSDGVLPSANLTIQNPG----QKE--------------DWNWYPDLGATNHLINSLGNMSVSSDYLG
                     ++QD+++ LLT ES+I+SK  SD  LP+ N+T QN      +KE              D NWYP+LGATNHLI++L N+S  S+Y G
Subjt:  -------------TIQDVITFLLTHESRIKSKANSDGVLPSANLTIQNPG----QKE--------------DWNWYPDLGATNHLINSLGNMSVSSDYLG

Query:  NNQVLIGNGA
         + +   NG+
Subjt:  NNQVLIGNGA

A0A5D3D3G2 Retrovirus-related Pol polyprotein from transposon TNT 1-942.1e-2034.27Show/hide
Query:  KNSEISHASQISQAISLGNKNSTVKLTDENFLMWKFQILTTLEGHELEGHISVECEPPPKTIQDVITFLLT---------HESRIKSKANSDGVLPSANL
        +N+E S  S I+Q    GNK S VKL D+NFL+WKFQILT LE +++E  +  E EPP K +    +   +          ES+ +SK  S+  LPS N+
Subjt:  KNSEISHASQISQAISLGNKNSTVKLTDENFLMWKFQILTTLEGHELEGHISVECEPPPKTIQDVITFLLT---------HESRIKSKANSDGVLPSANL

Query:  TIQNP---------------------------------------------------GQKEDWNWYPDLGATNHLINSLGNMSVSSDYLGNNQVLIGNGAS
          Q                                                     G   D NWYPD GATNHL +SL N+S  S+Y G NQ+   NG+ 
Subjt:  TIQNP---------------------------------------------------GQKEDWNWYPDLGATNHLINSLGNMSVSSDYLGNNQVLIGNGAS

Query:  LPISKLGYASFTS
        LPI+  G  SF S
Subjt:  LPISKLGYASFTS

A0A6J1D3S9 uncharacterized protein LOC111017341 isoform X21.5e-1358.67Show/hide
Query:  LETSKNSEI----SHASQISQAISLGNKNSTVKLTDENFLMWKFQILTTLEGHELEGHISVECEPPPKTIQDVIT
        +++S N+EI    ++  Q SQ I+ GNK STVKLTDENFL+WKFQ+LTTLEGH LE +I  + +PPPK IQD +T
Subjt:  LETSKNSEI----SHASQISQAISLGNKNSTVKLTDENFLMWKFQILTTLEGHELEGHISVECEPPPKTIQDVIT

A0A6J1D4X2 uncharacterized protein LOC111017341 isoform X11.5e-1353.76Show/hide
Query:  LETSKNSEI----SHASQISQAISLGNKNSTVKLTDENFLMWKFQILTTLEGHELEGHISVECEPPPKTIQ--DVITFLLT--HESRIKSKAN
        +++S N+EI    ++  Q SQ I+ GNK STVKLTDENFL+WKFQ+LTTLEGH LE +I  + +PPPK IQ  DV+T  L+  + +R+K K N
Subjt:  LETSKNSEI----SHASQISQAISLGNKNSTVKLTDENFLMWKFQILTTLEGHELEGHISVECEPPPKTIQ--DVITFLLT--HESRIKSKAN

SwissProt top hitse value%identityAlignment
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.4e-0534.33Show/hide
Query:  PSANLTIQNPGQKEDWNWYPDLGATNHLINSLGNMSVSSDYLGNNQVLIGNGASLPISKLGYASFTS
        P ANL + +P      NW  D GAT+H+ +   N+S+   Y G + V++ +G+++PIS  G  S ++
Subjt:  PSANLTIQNPGQKEDWNWYPDLGATNHLINSLGNMSVSSDYLGNNQVLIGNGASLPISKLGYASFTS

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.4e-0537.5Show/hide
Query:  PSANLTIQNPGQKEDWNWYPDLGATNHLINSLGNMSVSSDYLGNNQVLIGNGASLPISKLGYAS
        P ANL + +P      NW  D GAT+H+ +   N+S    Y G + V+I +G+++PI+  G AS
Subjt:  PSANLTIQNPGQKEDWNWYPDLGATNHLINSLGNMSVSSDYLGNNQVLIGNGASLPISKLGYAS

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGACCTTGGAGACCTCGAAGAATTCAGAAATCTCGCATGCAAGCCAGATTTCTCAGGCGATCAGTCTTGGAAATAAAAATTCAACCGTAAAGCTAACCGATGAAAA
TTTCCTGATGTGGAAATTCCAGATTCTTACTACCCTAGAGGGTCATGAACTTGAAGGTCATATTAGTGTAGAATGTGAACCTCCTCCAAAAACAATCCAGGATGTTATAA
CTTTTCTTCTAACTCATGAAAGTAGGATAAAAAGTAAAGCAAATTCTGATGGAGTTTTACCTTCTGCAAATCTTACTATTCAAAATCCTGGTCAAAAGGAAGATTGGAAT
TGGTATCCTGATTTGGGAGCCACCAATCACTTGATTAATAGTCTTGGTAATATGTCTGTAAGCTCAGATTATCTTGGAAACAATCAGGTTCTAATTGGAAACGGTGCAAG
TTTGCCTATTTCTAAACTTGGATATGCCTCTTTTACTTCCCCGAATAATCATGTTGTTGTTGGGTTTTATGCCCTAAAACTCGTAGATAGTGAATGTAGCCGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGACCTTGGAGACCTCGAAGAATTCAGAAATCTCGCATGCAAGCCAGATTTCTCAGGCGATCAGTCTTGGAAATAAAAATTCAACCGTAAAGCTAACCGATGAAAA
TTTCCTGATGTGGAAATTCCAGATTCTTACTACCCTAGAGGGTCATGAACTTGAAGGTCATATTAGTGTAGAATGTGAACCTCCTCCAAAAACAATCCAGGATGTTATAA
CTTTTCTTCTAACTCATGAAAGTAGGATAAAAAGTAAAGCAAATTCTGATGGAGTTTTACCTTCTGCAAATCTTACTATTCAAAATCCTGGTCAAAAGGAAGATTGGAAT
TGGTATCCTGATTTGGGAGCCACCAATCACTTGATTAATAGTCTTGGTAATATGTCTGTAAGCTCAGATTATCTTGGAAACAATCAGGTTCTAATTGGAAACGGTGCAAG
TTTGCCTATTTCTAAACTTGGATATGCCTCTTTTACTTCCCCGAATAATCATGTTGTTGTTGGGTTTTATGCCCTAAAACTCGTAGATAGTGAATGTAGCCGTTGA
Protein sequenceShow/hide protein sequence
METLETSKNSEISHASQISQAISLGNKNSTVKLTDENFLMWKFQILTTLEGHELEGHISVECEPPPKTIQDVITFLLTHESRIKSKANSDGVLPSANLTIQNPGQKEDWN
WYPDLGATNHLINSLGNMSVSSDYLGNNQVLIGNGASLPISKLGYASFTSPNNHVVVGFYALKLVDSECSR