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Lag0016233 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0016233
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr12:35107932..35108492
RNA-Seq ExpressionLag0016233
SyntenyLag0016233
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_006491472.1 uncharacterized protein LOC102626455 [Citrus sinensis]9.9e-2842.38Show/hide
Query:  ELQNAEEQLESLLVEEEMYWKQRSRDSWLKWGDRNTRWFHNHASSRRRRNEVKGLEDEDGVWQQDPDRILGLIEGYFEDLYTTSQPSNEEIDQALLHVSP
        E++  E+Q+ ++LV+EE+YWKQRSR  WLK GD+NT++FH+ AS+RRR+N++ G+ED+ G W  DP+ I G   G+F+ L+T+S PS  +I +AL  + P
Subjt:  ELQNAEEQLESLLVEEEMYWKQRSRDSWLKWGDRNTRWFHNHASSRRRRNEVKGLEDEDGVWQQDPDRILGLIEGYFEDLYTTSQPSNEEIDQALLHVSP

Query:  AVSDGMNSELLRPFQQDEVVLALKQIHPNKARARMDYQGHFISTHGLSLGQ
         VS  MN+ L  PF  +++  AL ++ P KA         F   H   +G+
Subjt:  AVSDGMNSELLRPFQQDEVVLALKQIHPNKARARMDYQGHFISTHGLSLGQ

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]4.9e-3543.58Show/hide
Query:  GNFRHRIRVATNQVQGALERLGSMGSRAELQNAEEQLESLLVEEEMYWKQRSRDSWLKWGDRNTRWFHNHASSRRRRNEVKGLEDEDGVWQQDPDRILGL
        GNFR+R++VA   +Q A+  L    +R   Q A   +  LL EEE++W+QRSRD W K GDRNT+WFH  AS RRR NE+KGL D+ G W+++  +++G+
Subjt:  GNFRHRIRVATNQVQGALERLGSMGSRAELQNAEEQLESLLVEEEMYWKQRSRDSWLKWGDRNTRWFHNHASSRRRRNEVKGLEDEDGVWQQDPDRILGL

Query:  IEGYFEDLYTTSQPSNEEIDQALLHVSPAVSDGMNSELLRPFQQDEVVLALKQIHPNKARARMDYQGHFISTHGLSLGQ
        IE YF +L+++S+PS   I+Q    +   VS G N +LL+PF ++E+++AL QIHP+KA     +   F       +GQ
Subjt:  IEGYFEDLYTTSQPSNEEIDQALLHVSPAVSDGMNSELLRPFQQDEVVLALKQIHPNKARARMDYQGHFISTHGLSLGQ

XP_024037590.1 uncharacterized protein LOC112097210 [Citrus clementina]1.6e-2543.15Show/hide
Query:  AELQNAEEQLESLLVEEEMYWKQRSRDSWLKWGDRNTRWFHNHASSRRRRNEVKGLEDEDGVWQQDPDRILGLIEGYFEDLYTTSQPSNEEIDQALLHVS
        +E+++ EEQ+E +L++EE+YWKQRSR  WLK GD+NT++FH+ ASSR+R+N + G+ D+  VW  D + +      YF  L+TTS PS ++I+ AL  + 
Subjt:  AELQNAEEQLESLLVEEEMYWKQRSRDSWLKWGDRNTRWFHNHASSRRRRNEVKGLEDEDGVWQQDPDRILGLIEGYFEDLYTTSQPSNEEIDQALLHVS

Query:  PAVSDGMNSELLRPFQQDEVVLALKQIHPNKARARMDYQGHFISTH
        P V+  MN++L  PF ++EV  AL Q+ P KA         F   H
Subjt:  PAVSDGMNSELLRPFQQDEVVLALKQIHPNKARARMDYQGHFISTH

XP_030487384.1 uncharacterized protein LOC115704310 [Cannabis sativa]2.4e-2643.08Show/hide
Query:  LQNAEEQLESLLVEEEMYWKQRSRDSWLKWGDRNTRWFHNHASSRRRRNEVKGLEDEDGVWQQDPDRILGLIEGYFEDLYTTSQPSNEEIDQALLHVSPA
        +Q  E++L  L+ ++E YW+QRSR  WL+WGDRNT++FH+ ASSRR++NE+KGL+D  G+WQ D + +  ++E Y+  L+T+S+ + +   + L  + P 
Subjt:  LQNAEEQLESLLVEEEMYWKQRSRDSWLKWGDRNTRWFHNHASSRRRRNEVKGLEDEDGVWQQDPDRILGLIEGYFEDLYTTSQPSNEEIDQALLHVSPA

Query:  VSDGMNSELLRPFQQDEVVLALKQIHPNKA
        V+  MN +L+  F  +EVV A+K+++P KA
Subjt:  VSDGMNSELLRPFQQDEVVLALKQIHPNKA

XP_030963753.1 uncharacterized protein LOC115984908 [Quercus lobata]1.0e-2440.99Show/hide
Query:  MGNFRHRIRVATNQVQG-ALERLGSMGSRAELQNAEEQLESLLVEEEMYWKQRSRDSWLKWGDRNTRWFHNHASSRRRRNEVKGLEDEDGVWQQDPDRIL
        +GN   +I+     +   +++  G+ G  AE+     ++  LL  EE+ W+QRS+  W K GDRNT++FH HAS RR++N + GL +EDGVW ++ D I 
Subjt:  MGNFRHRIRVATNQVQG-ALERLGSMGSRAELQNAEEQLESLLVEEEMYWKQRSRDSWLKWGDRNTRWFHNHASSRRRRNEVKGLEDEDGVWQQDPDRIL

Query:  GLIEGYFEDLYTTSQPSNEEIDQALLHVSPAVSDGMNSELLRPFQQDEVVLALKQIHPNKA
             YFE +Y+TS PS   I++    +S  V++ MN+EL + F +DEV +ALKQ+HP KA
Subjt:  GLIEGYFEDLYTTSQPSNEEIDQALLHVSPAVSDGMNSELLRPFQQDEVVLALKQIHPNKA

TrEMBL top hitse value%identityAlignment
A0A2N9HK89 Uncharacterized protein3.4e-2643.95Show/hide
Query:  RHRIRVA-TNQVQGALERLGSMGSRAELQNAEEQLESLLVEEEMYWKQRSRDSWLKWGDRNTRWFHNHASSRRRRNEVKGLEDEDGVWQQDPDRILGLIE
        R ++ VA T+ +QG        GS   L++ +  +  LL +EE  W+QRSR SWLK GDRNTR+FH  AS RRRRN + GL + +GVW ++ + ++ ++ 
Subjt:  RHRIRVA-TNQVQGALERLGSMGSRAELQNAEEQLESLLVEEEMYWKQRSRDSWLKWGDRNTRWFHNHASSRRRRNEVKGLEDEDGVWQQDPDRILGLIE

Query:  GYFEDLYTTSQPSNEEIDQALLHVSPAVSDGMNSELLRPFQQDEVVLALKQIHPNKA
        GY+E ++TTSQP++  I++A+ +V   VS  MN  L RP+ + EV  ALKQ+ P KA
Subjt:  GYFEDLYTTSQPSNEEIDQALLHVSPAVSDGMNSELLRPFQQDEVVLALKQIHPNKA

A0A6J1DAR4 uncharacterized protein LOC1110189542.4e-3543.58Show/hide
Query:  GNFRHRIRVATNQVQGALERLGSMGSRAELQNAEEQLESLLVEEEMYWKQRSRDSWLKWGDRNTRWFHNHASSRRRRNEVKGLEDEDGVWQQDPDRILGL
        GNFR+R++VA   +Q A+  L    +R   Q A   +  LL EEE++W+QRSRD W K GDRNT+WFH  AS RRR NE+KGL D+ G W+++  +++G+
Subjt:  GNFRHRIRVATNQVQGALERLGSMGSRAELQNAEEQLESLLVEEEMYWKQRSRDSWLKWGDRNTRWFHNHASSRRRRNEVKGLEDEDGVWQQDPDRILGL

Query:  IEGYFEDLYTTSQPSNEEIDQALLHVSPAVSDGMNSELLRPFQQDEVVLALKQIHPNKARARMDYQGHFISTHGLSLGQ
        IE YF +L+++S+PS   I+Q    +   VS G N +LL+PF ++E+++AL QIHP+KA     +   F       +GQ
Subjt:  IEGYFEDLYTTSQPSNEEIDQALLHVSPAVSDGMNSELLRPFQQDEVVLALKQIHPNKARARMDYQGHFISTHGLSLGQ

A0A803NGM9 Uncharacterized protein1.3e-2842.14Show/hide
Query:  RHRIRVATNQVQGALERLGSMGSR---AELQNAEEQLESLLVEEEMYWKQRSRDSWLKWGDRNTRWFHNHASSRRRRNEVKGLEDEDGVWQQDPDRILGL
        +  ++  TN+++ A+ +L S        EL+  E+QL  +L ++E YW+QRSR  WLKW D NT++FH  AS+RR++NE+KGL D  G+WQ D   I  L
Subjt:  RHRIRVATNQVQGALERLGSMGSR---AELQNAEEQLESLLVEEEMYWKQRSRDSWLKWGDRNTRWFHNHASSRRRRNEVKGLEDEDGVWQQDPDRILGL

Query:  IEGYFEDLYTTSQPSNEEIDQALLHVSPAVSDGMNSELLRPFQQDEVVLALKQIHPNKA
        +E Y+  L++ S P  +++++ L  V P V++ MN ELLRPF   EV+ A+K ++P KA
Subjt:  IEGYFEDLYTTSQPSNEEIDQALLHVSPAVSDGMNSELLRPFQQDEVVLALKQIHPNKA

A0A803P9M1 Uncharacterized protein5.3e-2740.99Show/hide
Query:  NFRHRIRVATNQVQGALERLGSMGSRA---ELQNAEEQLESLLVEEEMYWKQRSRDSWLKWGDRNTRWFHNHASSRRRRNEVKGLEDEDGVWQQDPDRIL
        N +  ++V T +++ A+  L      +   EL+  E+QL  +L ++E YW+QRS+  WLKWGD NT++F+  AS+RR++NE+KGL D  G+WQ D   I 
Subjt:  NFRHRIRVATNQVQGALERLGSMGSRA---ELQNAEEQLESLLVEEEMYWKQRSRDSWLKWGDRNTRWFHNHASSRRRRNEVKGLEDEDGVWQQDPDRIL

Query:  GLIEGYFEDLYTTSQPSNEEIDQALLHVSPAVSDGMNSELLRPFQQDEVVLALKQIHPNKA
         LIE YF +L++TS  + +++D+ L  V P V++ MN  L+ PF  +EV+ A+K ++P KA
Subjt:  GLIEGYFEDLYTTSQPSNEEIDQALLHVSPAVSDGMNSELLRPFQQDEVVLALKQIHPNKA

A0A803PV25 Uncharacterized protein1.4e-2740.88Show/hide
Query:  RHRIRVATNQVQGALERLGSM---GSRAELQNAEEQLESLLVEEEMYWKQRSRDSWLKWGDRNTRWFHNHASSRRRRNEVKGLEDEDGVWQQDPDRILGL
        + ++     +++ AL  L  M   G    +Q  E +L  LL ++E YW+QRSR  WL+WGDRNT++FH+ AS+RR++NE+KGL+D  GVWQ D   +  +
Subjt:  RHRIRVATNQVQGALERLGSM---GSRAELQNAEEQLESLLVEEEMYWKQRSRDSWLKWGDRNTRWFHNHASSRRRRNEVKGLEDEDGVWQQDPDRILGL

Query:  IEGYFEDLYTTSQPSNEEIDQALLHVSPAVSDGMNSELLRPFQQDEVVLALKQIHPNKA
        +E Y+E L+T+S  +   +++ L  V P VS  MN++LL  F ++EV+ A+K+++P KA
Subjt:  IEGYFEDLYTTSQPSNEEIDQALLHVSPAVSDGMNSELLRPFQQDEVVLALKQIHPNKA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43760.1 DNAse I-like superfamily protein1.3e-0424Show/hide
Query:  GNFRHRIRVATNQVQGALERLGSMGS----RAELQNAEEQLESLLVEEEMYWKQRSRDSWLKWGDRNTRWFHNHASSRRRRNEVKGLEDEDGVWQQDPDR
        GN +H+ + A + ++    +L +  S    R E   A ++        E +++Q+SR  WL+ GD NTR+FH    + + +N +K L  +D V  ++  +
Subjt:  GNFRHRIRVATNQVQGALERLGSMGS----RAELQNAEEQLESLLVEEEMYWKQRSRDSWLKWGDRNTRWFHNHASSRRRRNEVKGLEDEDGVWQQDPDR

Query:  ILGLIEGYFEDLY-TTSQPSNEEIDQALLHVSP-AVSDGMNSELLRPFQQDEVVLALKQIHPNKARARMDYQGHF
        +  +I  Y+  L  + S     +  Q +  + P   +D + S L       E+  A+  +  NKA     +   F
Subjt:  ILGLIEGYFEDLY-TTSQPSNEEIDQALLHVSP-AVSDGMNSELLRPFQQDEVVLALKQIHPNKARARMDYQGHF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAATTTTAGGCATCGTATCCGGGTGGCGACGAATCAGGTTCAGGGGGCGTTGGAGCGGTTGGGCAGTATGGGATCTCGAGCTGAGCTACAGAATGCAGAGGAGCA
GTTGGAGTCCTTGCTGGTGGAGGAAGAGATGTACTGGAAACAGAGATCTAGAGATAGTTGGCTGAAATGGGGGGACAGGAACACTCGATGGTTTCATAATCATGCCTCGA
GTAGGAGAAGGAGAAATGAGGTGAAGGGTTTGGAGGATGAGGACGGGGTTTGGCAGCAGGATCCGGACAGAATCTTGGGGCTTATTGAGGGTTACTTTGAGGATTTGTAT
ACGACATCGCAACCTTCGAATGAGGAAATAGATCAGGCCTTGTTACATGTGTCTCCCGCTGTTTCGGATGGGATGAATAGTGAGCTCCTTCGTCCGTTTCAGCAGGATGA
AGTTGTGCTTGCTTTGAAGCAGATTCACCCAAATAAAGCCCGGGCCCGGATGGACTATCAGGGGCATTTTATCAGCACTCATGGTCTGTCGTTGGGGCAGATGTGGTTCA
ATGTTGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAATTTTAGGCATCGTATCCGGGTGGCGACGAATCAGGTTCAGGGGGCGTTGGAGCGGTTGGGCAGTATGGGATCTCGAGCTGAGCTACAGAATGCAGAGGAGCA
GTTGGAGTCCTTGCTGGTGGAGGAAGAGATGTACTGGAAACAGAGATCTAGAGATAGTTGGCTGAAATGGGGGGACAGGAACACTCGATGGTTTCATAATCATGCCTCGA
GTAGGAGAAGGAGAAATGAGGTGAAGGGTTTGGAGGATGAGGACGGGGTTTGGCAGCAGGATCCGGACAGAATCTTGGGGCTTATTGAGGGTTACTTTGAGGATTTGTAT
ACGACATCGCAACCTTCGAATGAGGAAATAGATCAGGCCTTGTTACATGTGTCTCCCGCTGTTTCGGATGGGATGAATAGTGAGCTCCTTCGTCCGTTTCAGCAGGATGA
AGTTGTGCTTGCTTTGAAGCAGATTCACCCAAATAAAGCCCGGGCCCGGATGGACTATCAGGGGCATTTTATCAGCACTCATGGTCTGTCGTTGGGGCAGATGTGGTTCA
ATGTTGTTTGA
Protein sequenceShow/hide protein sequence
MGNFRHRIRVATNQVQGALERLGSMGSRAELQNAEEQLESLLVEEEMYWKQRSRDSWLKWGDRNTRWFHNHASSRRRRNEVKGLEDEDGVWQQDPDRILGLIEGYFEDLY
TTSQPSNEEIDQALLHVSPAVSDGMNSELLRPFQQDEVVLALKQIHPNKARARMDYQGHFISTHGLSLGQMWFNVV