; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0016246 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0016246
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionProtein PXR1
Genome locationchr12:35236896..35237928
RNA-Seq ExpressionLag0016246
SyntenyLag0016246
Gene Ontology termsGO:0016874 - ligase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040007.1 protein PXR1 [Cucumis melo var. makuwa]1.4e-5384.56Show/hide
Query:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREPLNTEKKSHPKDALGRSDVKRKANGGRSQMPQL
        MGGKGMRRRERNYRAAHGGYDRLPPPPD S+ D LPSKLRKLMSFTS R QESE VSEDIQRKRKR+ +NTEKKS+ KDA GRSDVK KANGG SQMPQ 
Subjt:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREPLNTEKKSHPKDALGRSDVKRKANGGRSQMPQL

Query:  SGSD-DDVQSKSSEKKNKKRKRNQVTDLRFEASLEDSNRRLKKKERRKK
        +GSD DDVQSKSSEKKNKKRKR QVTDLRFE SLE+S+RRLKK+ERRKK
Subjt:  SGSD-DDVQSKSSEKKNKKRKRNQVTDLRFEASLEDSNRRLKKKERRKK

KAG6574789.1 hypothetical protein SDJN03_25428, partial [Cucurbita argyrosperma subsp. sororia]2.0e-5581.08Show/hide
Query:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREPLNTEKKSHPKDALGRSDVKRKANGGRSQMPQL
        MGGKG+RRRERNYRAAHGGYDRLPPPP+AS+VD LPSKLRKLM+FTSPRPQESEKVSED+QRKRKRE ++TEKK HPK+A G+SD+K + NGG SQMPQL
Subjt:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREPLNTEKKSHPKDALGRSDVKRKANGGRSQMPQL

Query:  SGSDDDVQSKSSEKKNKKRKRNQVTDLRFEASLEDSNRRLKKKERRKK
        +GSDDDVQSKSSEKKNKKRK+ QVTDLRFE   E+SNRRLKK+ER++K
Subjt:  SGSDDDVQSKSSEKKNKKRKRNQVTDLRFEASLEDSNRRLKKKERRKK

XP_022959194.1 uncharacterized protein LOC111460256 [Cucurbita moschata]1.5e-5581.76Show/hide
Query:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREPLNTEKKSHPKDALGRSDVKRKANGGRSQMPQL
        MGGKG+RRRERNYRAAHGGYDRLPPPP+AS+VD LPSKLRKLM+FTSPRPQESEKVSED+QRKRKRE ++TEKK HPK+A G+SD+K K NGG SQMPQL
Subjt:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREPLNTEKKSHPKDALGRSDVKRKANGGRSQMPQL

Query:  SGSDDDVQSKSSEKKNKKRKRNQVTDLRFEASLEDSNRRLKKKERRKK
        +GSDDDVQSK SEKKNKKRK+ QVTDLRFE   E+SNRRLKK+ER+KK
Subjt:  SGSDDDVQSKSSEKKNKKRKRNQVTDLRFEASLEDSNRRLKKKERRKK

XP_023006093.1 probable H/ACA ribonucleoprotein complex subunit 4 [Cucurbita maxima]7.6e-5581.88Show/hide
Query:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREPLN-TEKKSHPKDALGRSDVKRKANGGRSQMPQ
        MGGKG+RRRERNYRAAHGGYDRLPPPP+AS+VD LPSKLRKLMSFTSPRPQESEKVSED+QRKRKRE ++ TEKK HPK+A G+SD+K K NGG SQMPQ
Subjt:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREPLN-TEKKSHPKDALGRSDVKRKANGGRSQMPQ

Query:  LSGSDDDVQSKSSEKKNKKRKRNQVTDLRFEASLEDSNRRLKKKERRKK
        L+GSDDDVQSKS+EKKNKKRK+ QVTDLRFE   E+SNRRLKK+ER+KK
Subjt:  LSGSDDDVQSKSSEKKNKKRKRNQVTDLRFEASLEDSNRRLKKKERRKK

XP_023547832.1 protein PXR1 [Cucurbita pepo subsp. pepo]1.7e-5480.41Show/hide
Query:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREPLNTEKKSHPKDALGRSDVKRKANGGRSQMPQL
        MGGKG+RRRERNYRAAHGGYDRLPPPP+AS+VD LPSKLRKLM+FTSPRPQESEKVSED+QRKRKRE ++TEKK HPK+A G+SD+K K +GG SQ+PQL
Subjt:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREPLNTEKKSHPKDALGRSDVKRKANGGRSQMPQL

Query:  SGSDDDVQSKSSEKKNKKRKRNQVTDLRFEASLEDSNRRLKKKERRKK
        +GSDDDVQSKSSEKK KKRK+ QVTDLRFE   E+SNRRLKK+ER+KK
Subjt:  SGSDDDVQSKSSEKKNKKRKRNQVTDLRFEASLEDSNRRLKKKERRKK

TrEMBL top hitse value%identityAlignment
A0A1S4E2Q2 LOW QUALITY PROTEIN: protein PXR11.5e-5383.89Show/hide
Query:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREPLNTEKKSHPKDALGRSDVKRKANGGRSQMPQL
        MGGKGMRRRERNYRAAHGGYDRLPPPPD S+ D LPSKLRKLMSFTS R QESE VSED+QRKRKR+  NTEKKS+ KDA GRSDVK KANGG SQMPQ 
Subjt:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREPLNTEKKSHPKDALGRSDVKRKANGGRSQMPQL

Query:  SGSD-DDVQSKSSEKKNKKRKRNQVTDLRFEASLEDSNRRLKKKERRKK
        +GSD DDVQSKSSEKKNKKRKR QVTDLRFE SLE+S+RRLKK+ERRKK
Subjt:  SGSD-DDVQSKSSEKKNKKRKRNQVTDLRFEASLEDSNRRLKKKERRKK

A0A5A7TEP7 Protein PXR16.9e-5484.56Show/hide
Query:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREPLNTEKKSHPKDALGRSDVKRKANGGRSQMPQL
        MGGKGMRRRERNYRAAHGGYDRLPPPPD S+ D LPSKLRKLMSFTS R QESE VSEDIQRKRKR+ +NTEKKS+ KDA GRSDVK KANGG SQMPQ 
Subjt:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREPLNTEKKSHPKDALGRSDVKRKANGGRSQMPQL

Query:  SGSD-DDVQSKSSEKKNKKRKRNQVTDLRFEASLEDSNRRLKKKERRKK
        +GSD DDVQSKSSEKKNKKRKR QVTDLRFE SLE+S+RRLKK+ERRKK
Subjt:  SGSD-DDVQSKSSEKKNKKRKRNQVTDLRFEASLEDSNRRLKKKERRKK

A0A6J1DLN3 DNA ligase 13.9e-4975.68Show/hide
Query:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREPLNTEKKSHPKDALGRSDVKRKANGGRSQMPQL
        MGGKG RRRERNYRAAHG YDRLPPPPD+SK+DALPSKLRKLMSFTS R QESEKV +D Q KRK+E +++EKKSHP+DA GR+DVK + NGG S+MPQL
Subjt:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREPLNTEKKSHPKDALGRSDVKRKANGGRSQMPQL

Query:  SGSDDDVQSKSSEKKNKKRKRNQVTDLRFEASLEDSNRRLKKKERRKK
        + S DD+QSKSSEKK+KKRKR QV DLRFE    +SNRRLKK+ERRKK
Subjt:  SGSDDDVQSKSSEKKNKKRKRNQVTDLRFEASLEDSNRRLKKKERRKK

A0A6J1H3V7 uncharacterized protein LOC1114602567.4e-5681.76Show/hide
Query:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREPLNTEKKSHPKDALGRSDVKRKANGGRSQMPQL
        MGGKG+RRRERNYRAAHGGYDRLPPPP+AS+VD LPSKLRKLM+FTSPRPQESEKVSED+QRKRKRE ++TEKK HPK+A G+SD+K K NGG SQMPQL
Subjt:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREPLNTEKKSHPKDALGRSDVKRKANGGRSQMPQL

Query:  SGSDDDVQSKSSEKKNKKRKRNQVTDLRFEASLEDSNRRLKKKERRKK
        +GSDDDVQSK SEKKNKKRK+ QVTDLRFE   E+SNRRLKK+ER+KK
Subjt:  SGSDDDVQSKSSEKKNKKRKRNQVTDLRFEASLEDSNRRLKKKERRKK

A0A6J1KUZ8 probable H/ACA ribonucleoprotein complex subunit 43.7e-5581.88Show/hide
Query:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREPLN-TEKKSHPKDALGRSDVKRKANGGRSQMPQ
        MGGKG+RRRERNYRAAHGGYDRLPPPP+AS+VD LPSKLRKLMSFTSPRPQESEKVSED+QRKRKRE ++ TEKK HPK+A G+SD+K K NGG SQMPQ
Subjt:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREPLN-TEKKSHPKDALGRSDVKRKANGGRSQMPQ

Query:  LSGSDDDVQSKSSEKKNKKRKRNQVTDLRFEASLEDSNRRLKKKERRKK
        L+GSDDDVQSKS+EKKNKKRK+ QVTDLRFE   E+SNRRLKK+ER+KK
Subjt:  LSGSDDDVQSKSSEKKNKKRKRNQVTDLRFEASLEDSNRRLKKKERRKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G45520.1 unknown protein1.1e-1947.3Show/hide
Query:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREPLNTEKKSHPKDALGRSDVKRKANGGRSQMPQL
        MGGKG +RRE+NY AAHGG  RLPPPPD SK D +PS LR LM++TSP P +S K  + +++K K               L +++V   A          
Subjt:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREPLNTEKKSHPKDALGRSDVKRKANGGRSQMPQL

Query:  SGSDDDVQSKSSEKKNKKRKRNQVTDLRFEASLEDSNRRLKKKERRKK
        S  DD V     EKK KKRKRNQ+TDLRFE  L + + R K+KER+KK
Subjt:  SGSDDDVQSKSSEKKNKKRKRNQVTDLRFEASLEDSNRRLKKKERRKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGGCAAAGGAATGCGGAGGAGAGAGCGGAATTACAGAGCCGCACATGGAGGCTACGATCGTCTCCCACCGCCGCCGGACGCTTCCAAAGTCGATGCTCTACCTTC
CAAACTCCGCAAGTTAATGTCCTTCACTTCCCCTCGACCTCAAGAGTCTGAGAAGGTCTCCGAGGATATTCAGCGAAAGCGCAAGAGAGAACCCCTTAATACTGAAAAGA
AATCCCATCCAAAGGATGCTCTGGGAAGATCTGATGTAAAGAGAAAAGCTAATGGTGGGAGATCACAAATGCCTCAGCTTTCAGGTAGTGATGATGACGTGCAAAGCAAG
TCCAGTGAGAAGAAGAACAAAAAACGAAAGAGAAATCAGGTTACTGATCTTCGTTTCGAAGCCTCGTTGGAGGATTCAAATCGGCGTTTAAAGAAGAAGGAACGCCGGAA
AAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGGCAAAGGAATGCGGAGGAGAGAGCGGAATTACAGAGCCGCACATGGAGGCTACGATCGTCTCCCACCGCCGCCGGACGCTTCCAAAGTCGATGCTCTACCTTC
CAAACTCCGCAAGTTAATGTCCTTCACTTCCCCTCGACCTCAAGAGTCTGAGAAGGTCTCCGAGGATATTCAGCGAAAGCGCAAGAGAGAACCCCTTAATACTGAAAAGA
AATCCCATCCAAAGGATGCTCTGGGAAGATCTGATGTAAAGAGAAAAGCTAATGGTGGGAGATCACAAATGCCTCAGCTTTCAGGTAGTGATGATGACGTGCAAAGCAAG
TCCAGTGAGAAGAAGAACAAAAAACGAAAGAGAAATCAGGTTACTGATCTTCGTTTCGAAGCCTCGTTGGAGGATTCAAATCGGCGTTTAAAGAAGAAGGAACGCCGGAA
AAAGTAA
Protein sequenceShow/hide protein sequence
MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREPLNTEKKSHPKDALGRSDVKRKANGGRSQMPQLSGSDDDVQSK
SSEKKNKKRKRNQVTDLRFEASLEDSNRRLKKKERRKK