; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0016247 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0016247
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionProtein PXR1
Genome locationchr12:35242036..35244958
RNA-Seq ExpressionLag0016247
SyntenyLag0016247
Gene Ontology termsGO:0016874 - ligase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040007.1 protein PXR1 [Cucumis melo var. makuwa]3.9e-3379.05Show/hide
Query:  ERSLYE-EKKLYRGRRRNSISGGKENKSKKSKTEEDLDFPRHEKIKFGDVVEAPLKLLAVPKAFKSAQVASQERKRLQAINEYRNRKGWTSRPGIQIPSM
        E SL E  ++L +  RR      K+NK KK+KTEE LDFPRHEKIKFGDVVEAPLKLLAVPKAFKSAQVASQERKRLQAINEYRNRKGWTSRPGIQIPSM
Subjt:  ERSLYE-EKKLYRGRRRNSISGGKENKSKKSKTEEDLDFPRHEKIKFGDVVEAPLKLLAVPKAFKSAQVASQERKRLQAINEYRNRKGWTSRPGIQIPSM

Query:  TISPS
        TI+P+
Subjt:  TISPS

TYK24495.1 protein PXR1 [Cucumis melo var. makuwa]3.9e-3358.43Show/hide
Query:  NLKAEQSDKA-----TCKKNSGSIQKLYSTIYDAFSDDAATAAMVKRMISYEGKGE-----ERSLYE-EKKLYRGRRRNSISGGKENKSKKSKTEEDLDF
        N+K+ Q D +       K N G+ Q    T  D   DD  + +  K+    + K       E SL E  ++L +  RR      K+NK KK+KTEE LDF
Subjt:  NLKAEQSDKA-----TCKKNSGSIQKLYSTIYDAFSDDAATAAMVKRMISYEGKGE-----ERSLYE-EKKLYRGRRRNSISGGKENKSKKSKTEEDLDF

Query:  PRHEKIKFGDVVEAPLKLLAVPKAFKSAQVASQERKRLQAINEYRNRKGWTSRPGIQIPSMTISPS
        PRHEKIKFGDVVEAPLKLLAVPKAFKSAQVASQERKRLQAINEYRNRKGWTSRPGIQIPSMTI+P+
Subjt:  PRHEKIKFGDVVEAPLKLLAVPKAFKSAQVASQERKRLQAINEYRNRKGWTSRPGIQIPSMTISPS

XP_022153750.1 DNA ligase 1 [Momordica charantia]3.9e-3376.42Show/hide
Query:  EERSLYEEKKLYRGRRRNSISGGKENKSKKSKTEEDLDFPRHEKIKFGDVVEAPLKLLAVPKAFKSAQVASQERKRLQAINEYRNRKGWTSRPGIQIPSM
        EE +    ++L +  RR      K+NK KK KTEEDLDFPRHEKIKFGDVVEAPLKL+AVPKAFKSAQVASQERKRLQAINEYRNRK WTSRPGIQIPSM
Subjt:  EERSLYEEKKLYRGRRRNSISGGKENKSKKSKTEEDLDFPRHEKIKFGDVVEAPLKLLAVPKAFKSAQVASQERKRLQAINEYRNRKGWTSRPGIQIPSM

Query:  TISPSV
         ISP+V
Subjt:  TISPSV

XP_022959194.1 uncharacterized protein LOC111460256 [Cucurbita moschata]1.1e-3274.53Show/hide
Query:  EERSLYEEKKLYRGRRRNSISGGKENKSKKSKTEEDLDFPRHEKIKFGDVVEAPLKLLAVPKAFKSAQVASQERKRLQAINEYRNRKGWTSRPGIQIPSM
        E+ S    ++L +  R+      K+NK KK KT+EDLDFPRHEKIKFGDVVEAPLKL AVPKAFKSAQVASQERKRLQAI EYRNRKGWTSRPG+QIPSM
Subjt:  EERSLYEEKKLYRGRRRNSISGGKENKSKKSKTEEDLDFPRHEKIKFGDVVEAPLKLLAVPKAFKSAQVASQERKRLQAINEYRNRKGWTSRPGIQIPSM

Query:  TISPSV
        TISP+V
Subjt:  TISPSV

XP_038907272.1 protein PXR1 [Benincasa hispida]1.0e-3377.14Show/hide
Query:  ERSLYEEKKLYRGRRRNSISGGKENKSKKSKTEEDLDFPRHEKIKFGDVVEAPLKLLAVPKAFKSAQVASQERKRLQAINEYRNRKGWTSRPGIQIPSMT
        E S    ++L +  RR      K+NK KK++TEEDLDFPRHEKIKFGDVVEAPLKL+AVPKAFKSAQVASQERKR QAINEYRNRKGWTSRPGIQIPSMT
Subjt:  ERSLYEEKKLYRGRRRNSISGGKENKSKKSKTEEDLDFPRHEKIKFGDVVEAPLKLLAVPKAFKSAQVASQERKRLQAINEYRNRKGWTSRPGIQIPSMT

Query:  ISPSV
        ISP+V
Subjt:  ISPSV

TrEMBL top hitse value%identityAlignment
A0A1S4E2Q2 LOW QUALITY PROTEIN: protein PXR19.4e-3378.1Show/hide
Query:  ERSLYE-EKKLYRGRRRNSISGGKENKSKKSKTEEDLDFPRHEKIKFGDVVEAPLKLLAVPKAFKSAQVASQERKRLQAINEYRNRKGWTSRPGIQIPSM
        E SL E  ++L +  RR      K+NK KK+KTEE LDFPRHE IKFGDVVEAPLKLLAVPKAFKSAQVASQERKRLQAINEYRNRKGWTSRPGIQIPSM
Subjt:  ERSLYE-EKKLYRGRRRNSISGGKENKSKKSKTEEDLDFPRHEKIKFGDVVEAPLKLLAVPKAFKSAQVASQERKRLQAINEYRNRKGWTSRPGIQIPSM

Query:  TISPS
        TI+P+
Subjt:  TISPS

A0A5A7TEP7 Protein PXR11.9e-3379.05Show/hide
Query:  ERSLYE-EKKLYRGRRRNSISGGKENKSKKSKTEEDLDFPRHEKIKFGDVVEAPLKLLAVPKAFKSAQVASQERKRLQAINEYRNRKGWTSRPGIQIPSM
        E SL E  ++L +  RR      K+NK KK+KTEE LDFPRHEKIKFGDVVEAPLKLLAVPKAFKSAQVASQERKRLQAINEYRNRKGWTSRPGIQIPSM
Subjt:  ERSLYE-EKKLYRGRRRNSISGGKENKSKKSKTEEDLDFPRHEKIKFGDVVEAPLKLLAVPKAFKSAQVASQERKRLQAINEYRNRKGWTSRPGIQIPSM

Query:  TISPS
        TI+P+
Subjt:  TISPS

A0A5D3DLK4 Protein PXR11.9e-3358.43Show/hide
Query:  NLKAEQSDKA-----TCKKNSGSIQKLYSTIYDAFSDDAATAAMVKRMISYEGKGE-----ERSLYE-EKKLYRGRRRNSISGGKENKSKKSKTEEDLDF
        N+K+ Q D +       K N G+ Q    T  D   DD  + +  K+    + K       E SL E  ++L +  RR      K+NK KK+KTEE LDF
Subjt:  NLKAEQSDKA-----TCKKNSGSIQKLYSTIYDAFSDDAATAAMVKRMISYEGKGE-----ERSLYE-EKKLYRGRRRNSISGGKENKSKKSKTEEDLDF

Query:  PRHEKIKFGDVVEAPLKLLAVPKAFKSAQVASQERKRLQAINEYRNRKGWTSRPGIQIPSMTISPS
        PRHEKIKFGDVVEAPLKLLAVPKAFKSAQVASQERKRLQAINEYRNRKGWTSRPGIQIPSMTI+P+
Subjt:  PRHEKIKFGDVVEAPLKLLAVPKAFKSAQVASQERKRLQAINEYRNRKGWTSRPGIQIPSMTISPS

A0A6J1DLN3 DNA ligase 11.9e-3376.42Show/hide
Query:  EERSLYEEKKLYRGRRRNSISGGKENKSKKSKTEEDLDFPRHEKIKFGDVVEAPLKLLAVPKAFKSAQVASQERKRLQAINEYRNRKGWTSRPGIQIPSM
        EE +    ++L +  RR      K+NK KK KTEEDLDFPRHEKIKFGDVVEAPLKL+AVPKAFKSAQVASQERKRLQAINEYRNRK WTSRPGIQIPSM
Subjt:  EERSLYEEKKLYRGRRRNSISGGKENKSKKSKTEEDLDFPRHEKIKFGDVVEAPLKLLAVPKAFKSAQVASQERKRLQAINEYRNRKGWTSRPGIQIPSM

Query:  TISPSV
         ISP+V
Subjt:  TISPSV

A0A6J1H3V7 uncharacterized protein LOC1114602565.5e-3374.53Show/hide
Query:  EERSLYEEKKLYRGRRRNSISGGKENKSKKSKTEEDLDFPRHEKIKFGDVVEAPLKLLAVPKAFKSAQVASQERKRLQAINEYRNRKGWTSRPGIQIPSM
        E+ S    ++L +  R+      K+NK KK KT+EDLDFPRHEKIKFGDVVEAPLKL AVPKAFKSAQVASQERKRLQAI EYRNRKGWTSRPG+QIPSM
Subjt:  EERSLYEEKKLYRGRRRNSISGGKENKSKKSKTEEDLDFPRHEKIKFGDVVEAPLKLLAVPKAFKSAQVASQERKRLQAINEYRNRKGWTSRPGIQIPSM

Query:  TISPSV
        TISP+V
Subjt:  TISPSV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G45520.1 unknown protein1.8e-2057.78Show/hide
Query:  RGRRRNSISGGKENKSKKSKTEEDL--DFPRHEKIKFGDVVEAPLKLLAVPKAFKSAQVASQERKRLQAINEYRNRKGWTSRPGIQIPSM
        R  R+      K+ K  K KTE+ L  +FP+HE+I+FGDVV+APLKL  VPKA KS   ASQER RLQAI+ YR+RKGWT+RPG+ IP++
Subjt:  RGRRRNSISGGKENKSKKSKTEEDL--DFPRHEKIKFGDVVEAPLKLLAVPKAFKSAQVASQERKRLQAINEYRNRKGWTSRPGIQIPSM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAGGAAATCTCAAGGCTGAACAATCTGATAAAGCCACATGTAAGAAGAATTCTGGATCCATCCAAAAGCTATACAGTACGATCTATGATGCATTTTCTGATGATGC
CGCAACAGCAGCCATGGTAAAGAGGATGATTAGTTATGAGGGCAAGGGAGAAGAGAGATCCCTGTATGAGGAGAAGAAGTTATACAGAGGAAGAAGAAGGAATTCGATAT
CAGGAGGCAAAGAAAATAAAAGTAAAAAATCCAAGACAGAGGAGGATCTAGATTTCCCAAGACATGAAAAAATCAAATTTGGAGACGTGGTTGAAGCTCCACTGAAGTTG
CTTGCAGTTCCGAAGGCGTTTAAATCTGCACAAGTTGCTTCTCAAGAGAGGAAGCGGTTGCAGGCTATAAATGAATATAGAAACCGCAAGGGATGGACCTCAAGGCCAGG
GATACAAATACCTTCAATGACTATATCACCATCTGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTAGGAAATCTCAAGGCTGAACAATCTGATAAAGCCACATGTAAGAAGAATTCTGGATCCATCCAAAAGCTATACAGTACGATCTATGATGCATTTTCTGATGATGC
CGCAACAGCAGCCATGGTAAAGAGGATGATTAGTTATGAGGGCAAGGGAGAAGAGAGATCCCTGTATGAGGAGAAGAAGTTATACAGAGGAAGAAGAAGGAATTCGATAT
CAGGAGGCAAAGAAAATAAAAGTAAAAAATCCAAGACAGAGGAGGATCTAGATTTCCCAAGACATGAAAAAATCAAATTTGGAGACGTGGTTGAAGCTCCACTGAAGTTG
CTTGCAGTTCCGAAGGCGTTTAAATCTGCACAAGTTGCTTCTCAAGAGAGGAAGCGGTTGCAGGCTATAAATGAATATAGAAACCGCAAGGGATGGACCTCAAGGCCAGG
GATACAAATACCTTCAATGACTATATCACCATCTGTTTAA
Protein sequenceShow/hide protein sequence
MVGNLKAEQSDKATCKKNSGSIQKLYSTIYDAFSDDAATAAMVKRMISYEGKGEERSLYEEKKLYRGRRRNSISGGKENKSKKSKTEEDLDFPRHEKIKFGDVVEAPLKL
LAVPKAFKSAQVASQERKRLQAINEYRNRKGWTSRPGIQIPSMTISPSV