CuGenDBv2

Gene ID	Lag0016257
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	protein DEK
Genome location	chr12:35389968..35390830
RNA-Seq Expression	Lag0016257
Synteny	Lag0016257
Gene Ontology terms	GO:0006325 - chromatin organization (biological process) GO:0006508 - proteolysis (biological process) GO:2000779 - regulation of double-strand break repair (biological process) GO:0005634 - nucleus (cellular component) GO:0003677 - DNA binding (molecular function) GO:0008237 - metallopeptidase activity (molecular function) GO:0016874 - ligase activity (molecular function) GO:0042393 - histone binding (molecular function)
InterPro domains	IPR044198 - Protein DEK

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6587400.1 Protein DEK, partial [Cucurbita argyrosperma subsp. sororia]

4.3e-14

90.57

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Query:  KEELSTKLLEFLESPRATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK
        KEELS KLLEFLESP ATTDVLLADKEQKG+KRRRASSGKVVGSG+SAEV AK
Subjt:  KEELSTKLLEFLESPRATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK

XP_022135017.1 protein DEK [Momordica charantia]

1.9e-14

90.57

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Query:  KEELSTKLLEFLESPRATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK
        KEE+S KLLEFLESP ATTDVLLADKEQKGKKRRR SSGK+VGSGESAEVSAK
Subjt:  KEELSTKLLEFLESPRATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK

XP_022921407.1 DNA ligase 1 [Cucurbita moschata]

5.6e-14

90.57

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Query:  KEELSTKLLEFLESPRATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK
        KEELS KLLEFLESP ATTDVLLADK+QKGKKRRRASSGK VGSGESAEV AK
Subjt:  KEELSTKLLEFLESPRATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK

XP_022933522.1 protein DEK-like [Cucurbita moschata]

4.3e-14

90.57

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Query:  KEELSTKLLEFLESPRATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK
        KEELS KLLEFLESP ATTDVLLADKEQKG+KRRRASSGKVVGSG+SAEV AK
Subjt:  KEELSTKLLEFLESPRATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK

XP_023531146.1 protein DEK-like isoform X1 [Cucurbita pepo subsp. pepo]

4.3e-14

90.57

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Query:  KEELSTKLLEFLESPRATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK
        KEELS KLLEFLESP ATTDVLLADKEQKG+KRRRASSGKVVGSG+SAEV AK
Subjt:  KEELSTKLLEFLESPRATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK

TrEMBL top hits

e value

%identity

Alignment

A0A6J1C1G8 protein DEK

9.3e-15

90.57

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Query:  KEELSTKLLEFLESPRATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK
        KEE+S KLLEFLESP ATTDVLLADKEQKGKKRRR SSGK+VGSGESAEVSAK
Subjt:  KEELSTKLLEFLESPRATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK

A0A6J1E0D6 DNA ligase 1

2.7e-14

90.57

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Query:  KEELSTKLLEFLESPRATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK
        KEELS KLLEFLESP ATTDVLLADK+QKGKKRRRASSGK VGSGESAEV AK
Subjt:  KEELSTKLLEFLESPRATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK

A0A6J1F002 protein DEK-like

2.1e-14

90.57

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Query:  KEELSTKLLEFLESPRATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK
        KEELS KLLEFLESP ATTDVLLADKEQKG+KRRRASSGKVVGSG+SAEV AK
Subjt:  KEELSTKLLEFLESPRATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK

A0A6J1L0R9 protein DEK-like isoform X2

4.6e-14

88.68

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Query:  KEELSTKLLEFLESPRATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK
        KEELS KLLEFLESP ATTDVLLADKEQKG+KRRRASSG+VVGSG+SAEV AK
Subjt:  KEELSTKLLEFLESPRATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK

A0A6J1L7V1 protein DEK-like isoform X1

4.6e-14

88.68

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Query:  KEELSTKLLEFLESPRATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK
        KEELS KLLEFLESP ATTDVLLADKEQKG+KRRRASSG+VVGSG+SAEV AK
Subjt:  KEELSTKLLEFLESPRATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G48710.1 DEK domain-containing chromatin associated protein

2.4e-07

56.6

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Query:  KEELSTKLLEFLESPRATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK
        KEEL+ ++LEFL  P+AT D+LLAD E++ KKR++++S K V SGES+ V AK
Subjt:  KEELSTKLLEFLESPRATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK

AT5G55660.1 DEK domain-containing chromatin associated protein

1.1e-04

45.28

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Query:  KEELSTKLLEFLESPRATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK
        KE++ TKL+EFLE P ATTDVL+ +KE+  K++R            S++ SAK
Subjt:  KEELSTKLLEFLESPRATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK

AT5G63550.1 DEK domain-containing chromatin associated protein

6.0e-06

50.94

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Query:  KEELSTKLLEFLESPRATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK
        KEEL+ K+LEFLESP+ T DV++AD+E+  K++     GK   SGES++  AK
Subjt:  KEELSTKLLEFLESPRATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK

AT5G63550.2 DEK domain-containing chromatin associated protein

9.2e-07

54.72

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Query:  KEELSTKLLEFLESPRATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK
        KEEL+ K+LEFLESP+ T DV++AD+E++ KKR+  S+ K   SGES++  AK
Subjt:  KEELSTKLLEFLESPRATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAK

Sequences

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CDS sequence

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ATGAGAAATGGTTTGTTTGGATTGAGAATGAGTATGACCTTGATTGAAAATGTCATCTTGATTTCTGATTTGTGGCTGTATATGTACTTTACTTTTTGGTTCATGTGTTC
TTGGCAGGAAAAGCAAAGGTCAAAGGAGGAACTCTCGACAAAGTTATTAGAATTTTTGGAGTCACCACGTGCTACAACGGATGTTTTACTGGCTGATAAGGAGCAGAAAG
GCAAAAAGCGACGGAGGGCCAGTTCAGGCAAGGTAGTTGGTTCTGGAGAATCTGCAGAAGTGTCTGCTAAGATGTAA

mRNA sequence

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Protein sequence

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MRNGLFGLRMSMTLIENVILISDLWLYMYFTFWFMCSWQEKQRSKEELSTKLLEFLESPRATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAKM

Lag0016257 (gene) of Sponge gourd (AG-4) v1 genome