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Lag0016278 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0016278
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionViolaxanthin de-epoxidase, chloroplastic
Genome locationchr12:35617604..35620740
RNA-Seq ExpressionLag0016278
SyntenyLag0016278
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF1888107.1 hypothetical protein Lal_00024119, partial [Lupinus albus]1.5e-0465.79Show/hide
Query:  VKRNSSKNRRMPVRAANTRYSLVKGERIVRFVFTARLR
        +++++SKN+RMP++ +NTRYSLVKGERIVRFV+  RLR
Subjt:  VKRNSSKNRRMPVRAANTRYSLVKGERIVRFVFTARLR

KAF7803805.1 Mitochondrial chaperone BCS1 [Senna tora]1.4e-0570.45Show/hide
Query:  KRNSSKNRRMPVRAANTRYSLVKGERIVRFVFTARLRALNVVSR
        +++ SKNRRMP+ AA+TRYSLVKGERIVR V TARLRA   +SR
Subjt:  KRNSSKNRRMPVRAANTRYSLVKGERIVRFVFTARLRALNVVSR

KAF7833781.1 Mitochondrial chaperone BCS1 [Senna tora]7.2e-1555.14Show/hide
Query:  MPVCAASTRYSLVKGERIVRFVLTARFRD-------LKVIA-----------GHHF------IAPTVKRNSSKNRRMPVRAANTRYSLVKGERIVRFVFT
        MP+ AASTRYSLVKGERIVRFVLTA  RD       L +++           GH        +AP  KRN  KNRRMP+ AA+TRYSLVKGERIVR V  
Subjt:  MPVCAASTRYSLVKGERIVRFVLTARFRD-------LKVIA-----------GHHF------IAPTVKRNSSKNRRMPVRAANTRYSLVKGERIVRFVFT

Query:  ARLRALN
        A LRA +
Subjt:  ARLRALN

KHG26645.1 Violaxanthin de-epoxidase, chloroplastic [Gossypium arboreum]3.4e-0487.5Show/hide
Query:  SKNRRMPVRAANTRYSLVKGERIVRFVFTARL
        SKNRRMP+RAA+TRYSLVKGERIVRFV  ARL
Subjt:  SKNRRMPVRAANTRYSLVKGERIVRFVFTARL

RDX78837.1 hypothetical protein CR513_40827, partial [Mucuna pruriens]1.1e-0748.19Show/hide
Query:  MPVCAASTRYSLVKGERIVRFVLTARFRDLKVIAGHHFIAPTVKRNSSKNRRMPVRAANTRYSLVKGERIVRFVFTARLRALN
        MP+    TRYSLVKGERIVR+V   R +             + + NS KN RM ++   TRYSLVKGERIVRFV   +LR ++
Subjt:  MPVCAASTRYSLVKGERIVRFVLTARFRDLKVIAGHHFIAPTVKRNSSKNRRMPVRAANTRYSLVKGERIVRFVFTARLRALN

TrEMBL top hitse value%identityAlignment
A0A0B0PNT1 Violaxanthin de-epoxidase, chloroplastic1.6e-0487.5Show/hide
Query:  SKNRRMPVRAANTRYSLVKGERIVRFVFTARL
        SKNRRMP+RAA+TRYSLVKGERIVRFV  ARL
Subjt:  SKNRRMPVRAANTRYSLVKGERIVRFVFTARL

A0A371FKJ3 Uncharacterized protein (Fragment)5.4e-0848.19Show/hide
Query:  MPVCAASTRYSLVKGERIVRFVLTARFRDLKVIAGHHFIAPTVKRNSSKNRRMPVRAANTRYSLVKGERIVRFVFTARLRALN
        MP+    TRYSLVKGERIVR+V   R +             + + NS KN RM ++   TRYSLVKGERIVRFV   +LR ++
Subjt:  MPVCAASTRYSLVKGERIVRFVLTARFRDLKVIAGHHFIAPTVKRNSSKNRRMPVRAANTRYSLVKGERIVRFVFTARLRALN

A0A6A5NPQ8 Uncharacterized protein (Fragment)7.3e-0565.79Show/hide
Query:  VKRNSSKNRRMPVRAANTRYSLVKGERIVRFVFTARLR
        +++++SKN+RMP++ +NTRYSLVKGERIVRFV+  RLR
Subjt:  VKRNSSKNRRMPVRAANTRYSLVKGERIVRFVFTARLR

A0A6A5P0A7 Uncharacterized protein2.1e-0454.55Show/hide
Query:  RNSSKNRRMPVRAANTRYSLVKGERIVRFVFTARLRALNVVSRRHFIASTGDRFS
        + +SKN+RMP++   TRYSLVKGERIVRFV   RLR  N      FI   G +FS
Subjt:  RNSSKNRRMPVRAANTRYSLVKGERIVRFVFTARLRALNVVSRRHFIASTGDRFS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGGTGTGTGCGGCGAGCACACGGTATTCTTTAGTAAAAGGCGAAAGAATAGTTCGCTTTGTGCTCACCGCCCGGTTCCGTGACTTGAAAGTGATAGCGGGACACCA
TTTTATAGCTCCAACAGTAAAGAGAAACTCCTCCAAAAATAGGCGTATGCCGGTGCGTGCGGCGAACACACGGTATTCTTTAGTAAAAGGCGAAAGAATAGTTCGCTTTG
TGTTCACCGCCCGGCTCCGTGCGTTGAACGTGGTATCAAGGCGACATTTTATAGCTTCAACTGGTGACCGATTTTCAACTTTTCCGATGTGGGAACTTTACTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCGGTGTGTGCGGCGAGCACACGGTATTCTTTAGTAAAAGGCGAAAGAATAGTTCGCTTTGTGCTCACCGCCCGGTTCCGTGACTTGAAAGTGATAGCGGGACACCA
TTTTATAGCTCCAACAGTAAAGAGAAACTCCTCCAAAAATAGGCGTATGCCGGTGCGTGCGGCGAACACACGGTATTCTTTAGTAAAAGGCGAAAGAATAGTTCGCTTTG
TGTTCACCGCCCGGCTCCGTGCGTTGAACGTGGTATCAAGGCGACATTTTATAGCTTCAACTGGTGACCGATTTTCAACTTTTCCGATGTGGGAACTTTACTGA
Protein sequenceShow/hide protein sequence
MPVCAASTRYSLVKGERIVRFVLTARFRDLKVIAGHHFIAPTVKRNSSKNRRMPVRAANTRYSLVKGERIVRFVFTARLRALNVVSRRHFIASTGDRFSTFPMWELY