CuGenDBv2

Gene ID	Lag0016293
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Genome location	chr12:35914981..35915924
RNA-Seq Expression	Lag0016293
Synteny	Lag0016293
Gene Ontology terms	NA
InterPro domains	IPR026960 - Reverse transcriptase zinc-binding domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

1.6e-23

36.31

Show/hide

Query:  WEVVKAFGSWEFGHCRIAHQLGNGGETFFWTDPWISNTPLVTKYPLLYRLSHVKAATVKEAWNESLNFWDLKLGRNLKDLEVDEWAALSTDLDSISLSHC
        W+ V    SW + +  I+ ++ +G +  FW D W  N PL    P L+ LS  K  +VKE WN S N W L + R L+D E + W  +   L +   +  
Subjt:  WEVVKAFGSWEFGHCRIAHQLGNGGETFFWTDPWISNTPLVTKYPLLYRLSHVKAATVKEAWNESLNFWDLKLGRNLKDLEVDEWAALSTDLDSISLSHC

Query:  EDKWEWPLNHNGIFSTKSL---LSDMTGNISLIEPSLAKIIWRDNYPKKIKFFFWKLAHKAINTKEVLQRRMPYLSLSP
          K  W LN N IF T S+   +++   + +   P+L K +W+  +PKK KFF W L H  INT + LQ+R+P  +LSP
Subjt:  EDKWEWPLNHNGIFSTKSL---LSDMTGNISLIEPSLAKIIWRDNYPKKIKFFFWKLAHKAINTKEVLQRRMPYLSLSP

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

8.3e-25

36.87

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Query:  WEVVKAFGSWEFGHCRIAHQLGNGGETFFWTDPWISNTPLVTKYPLLYRLSHVKAATVKEAWNESLNFWDLKLGRNLKDLEVDEWAALSTDLDSISLSHC
        W+ V    SW + +  I  ++ +G +  FW D W  N+PL    P L+ LS  K  +VK+ WN SL  W++ + R L+D E + W  +   L +      
Subjt:  WEVVKAFGSWEFGHCRIAHQLGNGGETFFWTDPWISNTPLVTKYPLLYRLSHVKAATVKEAWNESLNFWDLKLGRNLKDLEVDEWAALSTDLDSISLSHC

Query:  EDKWEWPLNHNGIFSTKSL---LSDMTGNISLIEPSLAKIIWRDNYPKKIKFFFWKLAHKAINTKEVLQRRMPYLSLSP
          K  W LN N IF T S+   LS+ + + +   PSL K +W+ ++PKK KFF W L H  INT + LQ+R+P  +LSP
Subjt:  EDKWEWPLNHNGIFSTKSL---LSDMTGNISLIEPSLAKIIWRDNYPKKIKFFFWKLAHKAINTKEVLQRRMPYLSLSP

KAA0044451.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

2.3e-22

38.12

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Query:  QLGNGGETFFWTDPWISNTPLVTKYPLLYRLSHVKAATVKEAWNESLNFWDLKLGRNLKDLEVDEWAALSTDLDSISLSHCEDKWEWPLNHNGIFST---
        ++ +G +  FW D W  N PL    P L+ LS  K  +VK+ WN S N W L + R L+D E + W  +   L +   +    K  W LN N IF T   
Subjt:  QLGNGGETFFWTDPWISNTPLVTKYPLLYRLSHVKAATVKEAWNESLNFWDLKLGRNLKDLEVDEWAALSTDLDSISLSHCEDKWEWPLNHNGIFST---

Query:  KSLLSDMTGNISLIEPSLAKIIWRDNYPKKIKFFFWKLAHKAINTKEVLQRRMPYLSLSP
        K +LS+   + +   P+L K +W+  +PKK KFF W L H  INT + LQ+R+P  +LSP
Subjt:  KSLLSDMTGNISLIEPSLAKIIWRDNYPKKIKFFFWKLAHKAINTKEVLQRRMPYLSLSP

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

6.3e-25

36.87

Show/hide

Query:  WEVVKAFGSWEFGHCRIAHQLGNGGETFFWTDPWISNTPLVTKYPLLYRLSHVKAATVKEAWNESLNFWDLKLGRNLKDLEVDEWAALSTDLDSISLSHC
        W+ V    SW + +  I  ++ +G +  FW D W  N+PL    P L+ LS  K  +VK+ WN SL  W++ + R L+D E + W  +   L +      
Subjt:  WEVVKAFGSWEFGHCRIAHQLGNGGETFFWTDPWISNTPLVTKYPLLYRLSHVKAATVKEAWNESLNFWDLKLGRNLKDLEVDEWAALSTDLDSISLSHC

Query:  EDKWEWPLNHNGIFSTKSL---LSDMTGNISLIEPSLAKIIWRDNYPKKIKFFFWKLAHKAINTKEVLQRRMPYLSLSP
          K  W LN N IF T S+   LS+ + + +   PSL K +W+ ++PKK KFF W L H  INT + LQ+R+P  +LSP
Subjt:  EDKWEWPLNHNGIFSTKSL---LSDMTGNISLIEPSLAKIIWRDNYPKKIKFFFWKLAHKAINTKEVLQRRMPYLSLSP

TYK29578.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

2.3e-22

38.12

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Query:  QLGNGGETFFWTDPWISNTPLVTKYPLLYRLSHVKAATVKEAWNESLNFWDLKLGRNLKDLEVDEWAALSTDLDSISLSHCEDKWEWPLNHNGIFST---
        ++ +G +  FW D W  N PL    P L+ LS  K  +VK+ WN S N W L + R L+D E + W  +   L +   +    K  W LN N IF T   
Subjt:  QLGNGGETFFWTDPWISNTPLVTKYPLLYRLSHVKAATVKEAWNESLNFWDLKLGRNLKDLEVDEWAALSTDLDSISLSHCEDKWEWPLNHNGIFST---

Query:  KSLLSDMTGNISLIEPSLAKIIWRDNYPKKIKFFFWKLAHKAINTKEVLQRRMPYLSLSP
        K +LS+   + +   P+L K +W+  +PKK KFF W L H  INT + LQ+R+P  +LSP
Subjt:  KSLLSDMTGNISLIEPSLAKIIWRDNYPKKIKFFFWKLAHKAINTKEVLQRRMPYLSLSP

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein

7.6e-24

36.31

Show/hide

Query:  WEVVKAFGSWEFGHCRIAHQLGNGGETFFWTDPWISNTPLVTKYPLLYRLSHVKAATVKEAWNESLNFWDLKLGRNLKDLEVDEWAALSTDLDSISLSHC
        W+ V    SW + +  I+ ++ +G +  FW D W  N PL    P L+ LS  K  +VKE WN S N W L + R L+D E + W  +   L +   +  
Subjt:  WEVVKAFGSWEFGHCRIAHQLGNGGETFFWTDPWISNTPLVTKYPLLYRLSHVKAATVKEAWNESLNFWDLKLGRNLKDLEVDEWAALSTDLDSISLSHC

Query:  EDKWEWPLNHNGIFSTKSL---LSDMTGNISLIEPSLAKIIWRDNYPKKIKFFFWKLAHKAINTKEVLQRRMPYLSLSP
          K  W LN N IF T S+   +++   + +   P+L K +W+  +PKK KFF W L H  INT + LQ+R+P  +LSP
Subjt:  EDKWEWPLNHNGIFSTKSL---LSDMTGNISLIEPSLAKIIWRDNYPKKIKFFFWKLAHKAINTKEVLQRRMPYLSLSP

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein

4.0e-25

36.87

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Query:  WEVVKAFGSWEFGHCRIAHQLGNGGETFFWTDPWISNTPLVTKYPLLYRLSHVKAATVKEAWNESLNFWDLKLGRNLKDLEVDEWAALSTDLDSISLSHC
        W+ V    SW + +  I  ++ +G +  FW D W  N+PL    P L+ LS  K  +VK+ WN SL  W++ + R L+D E + W  +   L +      
Subjt:  WEVVKAFGSWEFGHCRIAHQLGNGGETFFWTDPWISNTPLVTKYPLLYRLSHVKAATVKEAWNESLNFWDLKLGRNLKDLEVDEWAALSTDLDSISLSHC

Query:  EDKWEWPLNHNGIFSTKSL---LSDMTGNISLIEPSLAKIIWRDNYPKKIKFFFWKLAHKAINTKEVLQRRMPYLSLSP
          K  W LN N IF T S+   LS+ + + +   PSL K +W+ ++PKK KFF W L H  INT + LQ+R+P  +LSP
Subjt:  EDKWEWPLNHNGIFSTKSL---LSDMTGNISLIEPSLAKIIWRDNYPKKIKFFFWKLAHKAINTKEVLQRRMPYLSLSP

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein

3.1e-25

36.87

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Query:  WEVVKAFGSWEFGHCRIAHQLGNGGETFFWTDPWISNTPLVTKYPLLYRLSHVKAATVKEAWNESLNFWDLKLGRNLKDLEVDEWAALSTDLDSISLSHC
        W+ V    SW + +  I  ++ +G +  FW D W  N+PL    P L+ LS  K  +VK+ WN SL  W++ + R L+D E + W  +   L +      
Subjt:  WEVVKAFGSWEFGHCRIAHQLGNGGETFFWTDPWISNTPLVTKYPLLYRLSHVKAATVKEAWNESLNFWDLKLGRNLKDLEVDEWAALSTDLDSISLSHC

Query:  EDKWEWPLNHNGIFSTKSL---LSDMTGNISLIEPSLAKIIWRDNYPKKIKFFFWKLAHKAINTKEVLQRRMPYLSLSP
          K  W LN N IF T S+   LS+ + + +   PSL K +W+ ++PKK KFF W L H  INT + LQ+R+P  +LSP
Subjt:  EDKWEWPLNHNGIFSTKSL---LSDMTGNISLIEPSLAKIIWRDNYPKKIKFFFWKLAHKAINTKEVLQRRMPYLSLSP

A0A5A7TSA7 LINE-1 retrotransposable element ORF2 protein

1.1e-22

38.12

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Query:  QLGNGGETFFWTDPWISNTPLVTKYPLLYRLSHVKAATVKEAWNESLNFWDLKLGRNLKDLEVDEWAALSTDLDSISLSHCEDKWEWPLNHNGIFST---
        ++ +G +  FW D W  N PL    P L+ LS  K  +VK+ WN S N W L + R L+D E + W  +   L +   +    K  W LN N IF T   
Subjt:  QLGNGGETFFWTDPWISNTPLVTKYPLLYRLSHVKAATVKEAWNESLNFWDLKLGRNLKDLEVDEWAALSTDLDSISLSHCEDKWEWPLNHNGIFST---

Query:  KSLLSDMTGNISLIEPSLAKIIWRDNYPKKIKFFFWKLAHKAINTKEVLQRRMPYLSLSP
        K +LS+   + +   P+L K +W+  +PKK KFF W L H  INT + LQ+R+P  +LSP
Subjt:  KSLLSDMTGNISLIEPSLAKIIWRDNYPKKIKFFFWKLAHKAINTKEVLQRRMPYLSLSP

A0A5D3E1E3 LINE-1 retrotransposable element ORF2 protein

1.1e-22

38.12

Show/hide

Query:  QLGNGGETFFWTDPWISNTPLVTKYPLLYRLSHVKAATVKEAWNESLNFWDLKLGRNLKDLEVDEWAALSTDLDSISLSHCEDKWEWPLNHNGIFST---
        ++ +G +  FW D W  N PL    P L+ LS  K  +VK+ WN S N W L + R L+D E + W  +   L +   +    K  W LN N IF T   
Subjt:  QLGNGGETFFWTDPWISNTPLVTKYPLLYRLSHVKAATVKEAWNESLNFWDLKLGRNLKDLEVDEWAALSTDLDSISLSHCEDKWEWPLNHNGIFST---

Query:  KSLLSDMTGNISLIEPSLAKIIWRDNYPKKIKFFFWKLAHKAINTKEVLQRRMPYLSLSP
        K +LS+   + +   P+L K +W+  +PKK KFF W L H  INT + LQ+R+P  +LSP
Subjt:  KSLLSDMTGNISLIEPSLAKIIWRDNYPKKIKFFFWKLAHKAINTKEVLQRRMPYLSLSP

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

1.6e-07

25.25

Show/hide

Query:  RWEVVKAFGSWEFGHCRIAHQL------------GNGGETFFWTDPWISNTPLVTKYPLLYRLSHVKAATVKEAWNESLNFWDLKLGRNLKDLEVDEWAA
        RW + K  GSW      IA  L            G+G +  FWTD W+S  PL+ +     R +       K+ W           GR     ++D +  
Subjt:  RWEVVKAFGSWEFGHCRIAHQL------------GNGGETFFWTDPWISNTPLVTKYPLLYRLSHVKAATVKEAWNESLNFWDLKLGRNLKDLEVDEWAA

Query:  LSTDLDSIS-----LSHCEDKWEWPLNHNGIFSTKSLLSDMTGNISLIEPSLAKI---IWRDNYPKKIKFFFWKLAHKAINTKEVLQRRMPYLSLSPV
         +T L+  +     ++   D+  W  + +G FS +S    +T +  +  P++A     +W+   P+++K F W + ++A+ T+E   RR  +LS S V
Subjt:  LSTDLDSIS-----LSHCEDKWEWPLNHNGIFSTKSLLSDMTGNISLIEPSLAKI---IWRDNYPKKIKFFFWKLAHKAINTKEVLQRRMPYLSLSPV

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAGAAGAGATGCTGATGAGGGGGGAGGATTTCATTTGGTTAGGTGGGAGGTGGTCAAAGCCTTTGGATCTTGGGAGTTTGGGCATTGTCGCATAGCCCACCAGCTTGG
CAATGGAGGGGAGACTTTTTTCTGGACGGACCCTTGGATAAGCAACACCCCACTGGTCACGAAATATCCCCTTCTCTACCGCCTTTCTCATGTCAAGGCAGCCACAGTCA
AAGAGGCATGGAACGAATCGTTAAATTTTTGGGACCTCAAACTGGGTAGAAATTTGAAAGATTTGGAGGTGGATGAATGGGCTGCTTTGAGCACGGATCTTGACTCCATT
TCCTTATCTCATTGTGAAGACAAATGGGAATGGCCCCTCAATCATAACGGTATTTTTTCCACCAAATCTCTCCTCTCTGATATGACGGGCAATATTAGCCTCATTGAGCC
TTCCTTGGCAAAGATTATTTGGAGAGACAACTACCCAAAGAAGATAAAATTCTTTTTTTGGAAACTAGCCCACAAAGCCATCAACACCAAGGAGGTTCTTCAGCGACGCA
TGCCTTACTTGTCTCTCTCCCCGGTTGGTGTTACTTATGTAGATCTAGTGACGAATCGCAAGATCACATTTTTGCAACATGCCCCTTTGCTTGGAAGTTCTGGAGTAGGA
TCTCTAAATCTTTTGGGTGGTCCATGTCTCTACCGGATAATTTGGTGGATATCCTTGCCTCCGTTCTATTGGGACACCCTTTCACCAATATCAAAGGCCTTCTATGGATG
A

mRNA sequence

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Protein sequence

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MRRDADEGGGFHLVRWEVVKAFGSWEFGHCRIAHQLGNGGETFFWTDPWISNTPLVTKYPLLYRLSHVKAATVKEAWNESLNFWDLKLGRNLKDLEVDEWAALSTDLDSI
SLSHCEDKWEWPLNHNGIFSTKSLLSDMTGNISLIEPSLAKIIWRDNYPKKIKFFFWKLAHKAINTKEVLQRRMPYLSLSPVGVTYVDLVTNRKITFLQHAPLLGSSGVG
SLNLLGGPCLYRIIWWISLPPFYWDTLSPISKAFYG

Lag0016293 (gene) of Sponge gourd (AG-4) v1 genome