| GenBank top hits | e value | %identity | Alignment |
|---|
| XP_004154029.1 RNA polymerase sigma factor sigB [Cucumis sativus] | 2.6e-271 | 93.7 | Show/hide |
Query: RIRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVN
++RDPHSLRTQCILSAASPPTSTGTATTL+VDRLKLPPFDTNTDSVS ERLRSYLGAVESSLASTLLTSEEA+IAAAAAEAVTLAKAAVKVA+DAALL N
Subjt: RIRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVN
Query: NSNSSRTGTKSQSSPKSDALHFKWAQFMESERADIIGEPVRVNNRPAEDDALEHSTAESDEMEPTSEELELLQDELSKSITVRSKRQTERKARRTRAAEK
N NSSR GTKSQSSPK DALHFKWAQFMESERADIIGEPV VN RP E DALE ST ESD+MEPTSEELELLQDELS+SITV+SKRQTERKARRTRAAEK
Subjt: NSNSSRTGTKSQSSPKSDALHFKWAQFMESERADIIGEPVRVNNRPAEDDALEHSTAESDEMEPTSEELELLQDELSKSITVRSKRQTERKARRTRAAEK
Query: TATSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT
T TSV+S KSGSSSRKKRNS+QEVDYSDPLRYLRATT+TSRLLTATEELELSEGIQDLLKLERLQEEL ERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT
Subjt: TATSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT
Query: FCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE
CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQSRTIRLPFHMVEATYRVKEARKQL E
Subjt: FCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE
Query: NGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTL
NGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAET ED+LIKQFMKQDLEKVLDSLNPRE+QVIRWRFGMEDGRMKTL
Subjt: NGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTL
Query: QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY+MS
Subjt: QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
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| XP_008460092.1 PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Cucumis melo] | 2.3e-272 | 94.26 | Show/hide |
Query: RIRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVN
++RDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVS ERLRSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVA+DAALL N
Subjt: RIRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVN
Query: NSNSSRTGTKSQSSPKSDALHFKWAQFMESERADIIGEPVRVNNRPAEDDALEHSTAESDEMEPTSEELELLQDELSKSITVRSKRQTERKARRTRAAEK
N NSSR GTKSQ SPK DALHFKWAQFMESERADIIGEPV VN RP E DALE ST ESD++EPTS+ELELLQDELS+SITV+SKRQTERKARRTRAAEK
Subjt: NSNSSRTGTKSQSSPKSDALHFKWAQFMESERADIIGEPVRVNNRPAEDDALEHSTAESDEMEPTSEELELLQDELSKSITVRSKRQTERKARRTRAAEK
Query: TATSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT
T TSVV KSGSSSRKKR+SLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT
Subjt: TATSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT
Query: FCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE
CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQSRTIRLPFHMVEATYRVKEARKQL SE
Subjt: FCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE
Query: NGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTL
NGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAET+ED+LIKQFMKQDLEKVLDSLNPRE+QVIRWRFGMEDGRMKTL
Subjt: NGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTL
Query: QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Subjt: QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
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| XP_008460093.1 PREDICTED: RNA polymerase sigma factor sigB isoform X2 [Cucumis melo] | 2.6e-263 | 92.9 | Show/hide |
Query: HSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSS
HS S SPPTSTGTATTLNVDRLKLPPFDTNTDSVS ERLRSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVA+DAALL NN NSS
Subjt: HSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSS
Query: RTGTKSQSSPKSDALHFKWAQFMESERADIIGEPVRVNNRPAEDDALEHSTAESDEMEPTSEELELLQDELSKSITVRSKRQTERKARRTRAAEKTATSV
R GTKSQ SPK DALHFKWAQFMESERADIIGEPV VN RP E DALE ST ESD++EPTS+ELELLQDELS+SITV+SKRQTERKARRTRAAEKT TSV
Subjt: RTGTKSQSSPKSDALHFKWAQFMESERADIIGEPVRVNNRPAEDDALEHSTAESDEMEPTSEELELLQDELSKSITVRSKRQTERKARRTRAAEKTATSV
Query: VSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDK
V KSGSSSRKKR+SLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDK
Subjt: VSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDK
Query: MIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP
MIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQSRTIRLPFHMVEATYRVKEARKQL SENGRHP
Subjt: MIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP
Query: DDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGE
DD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAET+ED+LIKQFMKQDLEKVLDSLNPRE+QVIRWRFGMEDGRMKTLQEIGE
Subjt: DDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGE
Query: IMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
IMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Subjt: IMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
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| XP_022155781.1 RNA polymerase sigma factor sigB [Momordica charantia] | 9.1e-269 | 93.52 | Show/hide |
Query: RIRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVN
++RDPHSLRTQCILSAASP TSTGTATT NV+RLKLPP D NTDS+SAERLRSYL AVESS ASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVN
Subjt: RIRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVN
Query: NSNSSRTGTKSQSSPKSDALHFKWAQFMESERADIIGEPVRVNNRPAEDDALEHSTAESDEMEPTSEELELLQDELSKSITVRSKRQTERKARRTRAAEK
NSNSS+TG KSQSS KSDALHFKW QFMESERADIIG PV VNNRPAE DAL+H TAESD +PT+EELELLQDELS +I VRS+RQTER+A+RTRAAEK
Subjt: NSNSSRTGTKSQSSPKSDALHFKWAQFMESERADIIGEPVRVNNRPAEDDALEHSTAESDEMEPTSEELELLQDELSKSITVRSKRQTERKARRTRAAEK
Query: TATSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT
ATSVVS+KSGSSSRKKRNS+QEVDYSDPLRYLRATTS SRLLTATEELELSEGIQDLLKLERLQEEL ERYG EPTFAQWAAAAGVNQRTLRKRLNYGT
Subjt: TATSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT
Query: FCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE
FCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE
Subjt: FCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE
Query: NGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTL
NGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTL
Subjt: NGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTL
Query: QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Subjt: QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
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| XP_038875580.1 RNA polymerase sigma factor sigB isoform X1 [Benincasa hispida] | 3.8e-275 | 95 | Show/hide |
Query: RIRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVN
++RDPHSLRTQCILSAASPPTSTGTATTLNVDRL LPPFDTNTDSVS ERLRSYLGAVESSLASTLLTSEEATIAAAAAEAV LAKAAVKVA+DAALL N
Subjt: RIRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVN
Query: NSNSSRTGTKSQSSPKSDALHFKWAQFMESERADIIGEPVRVNNRPAEDDALEHSTAESDEMEPTSEELELLQDELSKSITVRSKRQTERKARRTRAAEK
NSNSSR G KS+SSP+ DALHFKWAQFMESERADIIGEPV VNNRP E DAL+ ST +SD+MEPTSEELELLQDELS+SITVRSKRQTERKARRTRAAEK
Subjt: NSNSSRTGTKSQSSPKSDALHFKWAQFMESERADIIGEPVRVNNRPAEDDALEHSTAESDEMEPTSEELELLQDELSKSITVRSKRQTERKARRTRAAEK
Query: TATSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT
TATSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTA EELELSEGIQDLLKLERLQEELA+RYGNEPTFAQWAAAAGVNQRTLRKRLNYGT
Subjt: TATSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT
Query: FCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE
CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE
Subjt: FCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE
Query: NGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTL
NGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAET+ED+LIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTL
Subjt: NGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTL
Query: QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL+S
Subjt: QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A0A0K917 RNA polymerase sigma factor | 1.2e-271 | 93.7 | Show/hide |
Query: RIRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVN
++RDPHSLRTQCILSAASPPTSTGTATTL+VDRLKLPPFDTNTDSVS ERLRSYLGAVESSLASTLLTSEEA+IAAAAAEAVTLAKAAVKVA+DAALL N
Subjt: RIRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVN
Query: NSNSSRTGTKSQSSPKSDALHFKWAQFMESERADIIGEPVRVNNRPAEDDALEHSTAESDEMEPTSEELELLQDELSKSITVRSKRQTERKARRTRAAEK
N NSSR GTKSQSSPK DALHFKWAQFMESERADIIGEPV VN RP E DALE ST ESD+MEPTSEELELLQDELS+SITV+SKRQTERKARRTRAAEK
Subjt: NSNSSRTGTKSQSSPKSDALHFKWAQFMESERADIIGEPVRVNNRPAEDDALEHSTAESDEMEPTSEELELLQDELSKSITVRSKRQTERKARRTRAAEK
Query: TATSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT
T TSV+S KSGSSSRKKRNS+QEVDYSDPLRYLRATT+TSRLLTATEELELSEGIQDLLKLERLQEEL ERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT
Subjt: TATSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT
Query: FCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE
CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQSRTIRLPFHMVEATYRVKEARKQL E
Subjt: FCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE
Query: NGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTL
NGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAET ED+LIKQFMKQDLEKVLDSLNPRE+QVIRWRFGMEDGRMKTL
Subjt: NGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTL
Query: QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY+MS
Subjt: QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
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| A0A1S3CBA5 RNA polymerase sigma factor | 1.2e-263 | 92.9 | Show/hide |
Query: HSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSS
HS S SPPTSTGTATTLNVDRLKLPPFDTNTDSVS ERLRSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVA+DAALL NN NSS
Subjt: HSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSS
Query: RTGTKSQSSPKSDALHFKWAQFMESERADIIGEPVRVNNRPAEDDALEHSTAESDEMEPTSEELELLQDELSKSITVRSKRQTERKARRTRAAEKTATSV
R GTKSQ SPK DALHFKWAQFMESERADIIGEPV VN RP E DALE ST ESD++EPTS+ELELLQDELS+SITV+SKRQTERKARRTRAAEKT TSV
Subjt: RTGTKSQSSPKSDALHFKWAQFMESERADIIGEPVRVNNRPAEDDALEHSTAESDEMEPTSEELELLQDELSKSITVRSKRQTERKARRTRAAEKTATSV
Query: VSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDK
V KSGSSSRKKR+SLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDK
Subjt: VSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDK
Query: MIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP
MIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQSRTIRLPFHMVEATYRVKEARKQL SENGRHP
Subjt: MIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP
Query: DDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGE
DD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAET+ED+LIKQFMKQDLEKVLDSLNPRE+QVIRWRFGMEDGRMKTLQEIGE
Subjt: DDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGE
Query: IMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
IMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Subjt: IMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
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| A0A1S3CD00 RNA polymerase sigma factor | 1.1e-272 | 94.26 | Show/hide |
Query: RIRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVN
++RDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVS ERLRSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVA+DAALL N
Subjt: RIRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVN
Query: NSNSSRTGTKSQSSPKSDALHFKWAQFMESERADIIGEPVRVNNRPAEDDALEHSTAESDEMEPTSEELELLQDELSKSITVRSKRQTERKARRTRAAEK
N NSSR GTKSQ SPK DALHFKWAQFMESERADIIGEPV VN RP E DALE ST ESD++EPTS+ELELLQDELS+SITV+SKRQTERKARRTRAAEK
Subjt: NSNSSRTGTKSQSSPKSDALHFKWAQFMESERADIIGEPVRVNNRPAEDDALEHSTAESDEMEPTSEELELLQDELSKSITVRSKRQTERKARRTRAAEK
Query: TATSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT
T TSVV KSGSSSRKKR+SLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT
Subjt: TATSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT
Query: FCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE
CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQSRTIRLPFHMVEATYRVKEARKQL SE
Subjt: FCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE
Query: NGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTL
NGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAET+ED+LIKQFMKQDLEKVLDSLNPRE+QVIRWRFGMEDGRMKTL
Subjt: NGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTL
Query: QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Subjt: QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
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| A0A6J1DSR7 RNA polymerase sigma factor | 4.4e-269 | 93.52 | Show/hide |
Query: RIRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVN
++RDPHSLRTQCILSAASP TSTGTATT NV+RLKLPP D NTDS+SAERLRSYL AVESS ASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVN
Subjt: RIRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVN
Query: NSNSSRTGTKSQSSPKSDALHFKWAQFMESERADIIGEPVRVNNRPAEDDALEHSTAESDEMEPTSEELELLQDELSKSITVRSKRQTERKARRTRAAEK
NSNSS+TG KSQSS KSDALHFKW QFMESERADIIG PV VNNRPAE DAL+H TAESD +PT+EELELLQDELS +I VRS+RQTER+A+RTRAAEK
Subjt: NSNSSRTGTKSQSSPKSDALHFKWAQFMESERADIIGEPVRVNNRPAEDDALEHSTAESDEMEPTSEELELLQDELSKSITVRSKRQTERKARRTRAAEK
Query: TATSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT
ATSVVS+KSGSSSRKKRNS+QEVDYSDPLRYLRATTS SRLLTATEELELSEGIQDLLKLERLQEEL ERYG EPTFAQWAAAAGVNQRTLRKRLNYGT
Subjt: TATSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT
Query: FCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE
FCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE
Subjt: FCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE
Query: NGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTL
NGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTL
Subjt: NGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTL
Query: QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Subjt: QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
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| A0A6J1HL45 RNA polymerase sigma factor sigB | 2.6e-261 | 91.09 | Show/hide |
Query: RIRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVN
+ RDPHSLRTQCILSAASPPT TGTATT NVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEATIAAAAAEAV LAKAAVK A DAALLVN
Subjt: RIRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVN
Query: NSNSSRTGTKSQSSPKSDALHFKWAQFMESERADIIGEPVRVNNRPAEDDALEHSTAESDEMEPTSEELELLQDELSKSITVRSKRQTERKARRTRAAEK
NSNSSR+ TKSQSS +S+ALHFKW QFMESERADIIGEPV VNNRP E DALE STAESD+MEPTSEELELL+DE SKSI VRS RQTERKARRTRA+EK
Subjt: NSNSSRTGTKSQSSPKSDALHFKWAQFMESERADIIGEPVRVNNRPAEDDALEHSTAESDEMEPTSEELELLQDELSKSITVRSKRQTERKARRTRAAEK
Query: TATSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT
ATSVVSLKSGSSSRKKRNS QEVDY+DPLRYLRATTS S+LLTA++ELELSEGIQDLLKLERL+EELA RYGNEPTFAQWAAAAGVNQRTLRKRLNYGT
Subjt: TATSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT
Query: FCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE
FCKDKMIKSNIRLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY+VKEARKQLY+
Subjt: FCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE
Query: NGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTL
NGR P+DEEIA AAGLSMKRLA VLMTPKAPRSLEQK GINQNLKPSEVISDPEA T+EDLLIKQFMKQ+LEKVLDSLNPRERQ+IRWR+GMEDGRMKTL
Subjt: NGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTL
Query: QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLM
QEIGE+MGVSRERIRQIE CAFRKLKNKKRTKHLQQYLM
Subjt: QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLM
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| O22056 RNA polymerase sigma factor sigB | 2.6e-181 | 66.67 | Show/hide |
Query: QCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSAERLRSYLGA---------VESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNN
QC +S SP T + L+V +L+LP FDT++DS+ ++R +Y +E+ + TLLTS+EA + AAAAEAV LA+AAVKVAKDA L N
Subjt: QCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSAERLRSYLGA---------VESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNN
Query: SNSSRTGTKSQSSPKSDALHFKWAQFMESERADIIGEPVRVNNRPAEDDALEHSTAESDEM----EPTSEELELLQDELSKSITVRSKRQTERKARRTRA
SN++ T S + +S KW QF E ERA I+G + V++ D + S + + + EE+ELL+++ S S+ VRS RQTERKARR +
Subjt: SNSSRTGTKSQSSPKSDALHFKWAQFMESERADIIGEPVRVNNRPAEDDALEHSTAESDEM----EPTSEELELLQDELSKSITVRSKRQTERKARRTRA
Query: AEKTATSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLN
EKTA+ + S+K+GSS +KKR QEVD++DPLRYLR TTS+S+LLT EE ELS GIQDLLKLERLQ EL ER G +PTFAQWA+AAGV+Q++LR+R++
Subjt: AEKTATSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLN
Query: YGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL
+GT CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQSR IRLPFHMVEATYRVKEARKQL
Subjt: YGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL
Query: YSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRM
YSE G+HP +EEIAEA GLSMKRL AVL++PK PRSL+QKIG+NQNLKPSEVI+DPEA TSED+LIK+FM+QDL+KVLDSL RE+QVIRWRFGMEDGRM
Subjt: YSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRM
Query: KTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
KTLQEIGE+MGVSRER+RQIES AFRKLKNKKR HLQQYL++
Subjt: KTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
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| P26683 RNA polymerase sigma factor SigA | 1.3e-76 | 46.39 | Show/hide |
Query: KSGSSSRKKRNSLQEVDY--SDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKM
KSG +++ +R + + + D +R RLL A EE+EL+ I DLL+LER++E L+E+ +P ++WA A + R RL+ G KDKM
Subjt: KSGSSSRKKRNSLQEVDY--SDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKM
Query: IKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPD
++SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Subjt: IKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPD
Query: DEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEI
+EEIA +++++L + + + P SLE IG ++ + + I + + ET ED + K +++DLEKVLDSL+PRER V+R R+G++DGRMKTL+EIG+I
Subjt: DEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEI
Query: MGVSRERIRQIESCAFRKLKNKKRTKHLQQYL
V+RERIRQIE+ A RKL++ R L++Y+
Subjt: MGVSRERIRQIESCAFRKLKNKKRTKHLQQYL
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| P38023 RNA polymerase sigma factor SigA1 | 5.7e-72 | 40.86 | Show/hide |
Query: ESDEMEPTSEELELLQDELSKSITVRSKRQTERKARRTRAAEKTATSVVSL-------------KSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLT
+ ++ E + L D K ++KR + +KA T A + AT++ + ++ K + +++ D +R RLL
Subjt: ESDEMEPTSEELELLQDELSKSITVRSKRQTERKARRTRAAEKTATSVVSL-------------KSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLT
Query: ATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE
A EE+EL+ I DLL LER+++EL E+ P+ A+WAAA R+RL G KDKM++SN+RLV+SIAK Y G++ QDL+QEG GL+R AE
Subjt: ATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE
Query: KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNL
KFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P +EEIA +++++L + + + P SLE IG ++
Subjt: KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNL
Query: KPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL
+ + I + + ET ED + K +++DLE VL +L+PRER V+R R+G++DGRMKTL+EIG++ V+RERIRQIE+ A RKL++ R L++Y+
Subjt: KPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL
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| P52322 RNA polymerase sigma factor SigA | 2.5e-67 | 40.44 | Show/hide |
Query: SSRKKRNSLQEVDYS-DPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEE----------------------LAERYGNEPTFA----------
+S ++R++ ++ Y+ D +R RLL A EE+EL+ I DLLKLER++E+ + E+ EP +
Subjt: SSRKKRNSLQEVDYS-DPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEE----------------------LAERYGNEPTFA----------
Query: -------QWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD
+W A + ++RL +G K+KM++SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++D
Subjt: -------QWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD
Query: QSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLE
QSRTIRLP H+ E R+K+ K L E R P +EEIA +++++L + + + P SLE IG ++ + + I + + ET ED + K +++DLE
Subjt: QSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLE
Query: KVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL
VLD+L+PRER V+R R+G++DGRMKTL+EIG+I V+RERIRQIE+ A RKL++ R L++Y+
Subjt: KVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL
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| Q9LD95 RNA polymerase sigma factor sigF, chloroplastic | 2.0e-64 | 40 | Show/hide |
Query: KSITVRSKRQTERKARRTRAAEKTATSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPT
K VRSKRQ ER+A+ RA + +S KK+ Q D D L+ T +LLTA EE EL IQ LLKLE+++ +L + G EPT
Subjt: KSITVRSKRQTERKARRTRAAEKTATSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPT
Query: FAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI
+WA A G++ L+ ++ G ++K+I +N+RLV+ IAK YQ G+N QDL+QEG GL++ EKF G +F+TYA+WWI+Q++RKS+ SRTI
Subjt: FAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI
Query: RLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDS
RLP ++ +V EARK E P EE+A G+S ++L +L + P S++Q I +Q+ E+ D ET + KQ M+ + +L+
Subjt: RLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDS
Query: LNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY
L+P+ER++I+ RFG++ G+ ++L EIGEI G+S+ER+RQ+ES A +LK + L Y
Subjt: LNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY
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| Arabidopsis top hits | e value | %identity | Alignment |
|---|
| AT1G08540.1 RNApolymerase sigma subunit 2 | 1.8e-182 | 66.67 | Show/hide |
Query: QCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSAERLRSYLGA---------VESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNN
QC +S SP T + L+V +L+LP FDT++DS+ ++R +Y +E+ + TLLTS+EA + AAAAEAV LA+AAVKVAKDA L N
Subjt: QCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSAERLRSYLGA---------VESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNN
Query: SNSSRTGTKSQSSPKSDALHFKWAQFMESERADIIGEPVRVNNRPAEDDALEHSTAESDEM----EPTSEELELLQDELSKSITVRSKRQTERKARRTRA
SN++ T S + +S KW QF E ERA I+G + V++ D + S + + + EE+ELL+++ S S+ VRS RQTERKARR +
Subjt: SNSSRTGTKSQSSPKSDALHFKWAQFMESERADIIGEPVRVNNRPAEDDALEHSTAESDEM----EPTSEELELLQDELSKSITVRSKRQTERKARRTRA
Query: AEKTATSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLN
EKTA+ + S+K+GSS +KKR QEVD++DPLRYLR TTS+S+LLT EE ELS GIQDLLKLERLQ EL ER G +PTFAQWA+AAGV+Q++LR+R++
Subjt: AEKTATSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLN
Query: YGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL
+GT CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQSR IRLPFHMVEATYRVKEARKQL
Subjt: YGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL
Query: YSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRM
YSE G+HP +EEIAEA GLSMKRL AVL++PK PRSL+QKIG+NQNLKPSEVI+DPEA TSED+LIK+FM+QDL+KVLDSL RE+QVIRWRFGMEDGRM
Subjt: YSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRM
Query: KTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
KTLQEIGE+MGVSRER+RQIES AFRKLKNKKR HLQQYL++
Subjt: KTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
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| AT1G64860.1 sigma factor A | 1.0e-36 | 30.62 | Show/hide |
Query: DDALEHSTAESDEMEPTSEELELLQDELSKSITVRSKRQTERKA-----------RRTRAAEKTATSVVSLKSGSSSRKKRN-----SLQEVDYSDPLR-
D LE + D++ S E LL L KS+ +S + KA R+ + T + + + + ++KK N ++ +V +R
Subjt: DDALEHSTAESDEMEPTSEELELLQDELSKSITVRSKRQTERKA-----------RRTRAAEKTATSVVSLKSGSSSRKKRN-----SLQEVDYSDPLR-
Query: YLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDL
Y++ S +L+ E + LS+ I+ L+L+ + L +R G EP+ Q A + +++ L+ L ++K+ SN+RLV+SIA+ Y G + DL
Subjt: YLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDL
Query: VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAP
VQ G GL+RG EKFD+SKGF+ STY +WWI+Q V ++L D SRT+RLP H+ E ++ A+ +L E G P + IAE+ +S K++
Subjt: VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAP
Query: RSLEQKIGINQNLKPSEV----ISDPEAETS-----EDLLIKQFMKQDLEKVLD-SLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCA
SL++ + N P E I+D E + +DL +K+++ K++ +L RE+++IR +G+ D T ++I + +G+SRER+RQ+ A
Subjt: RSLEQKIGINQNLKPSEV----ISDPEAETS-----EDLLIKQFMKQDLEKVLD-SLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCA
Query: FRKLKNKKRTKHLQQYLM
KLK+ R + ++ ++
Subjt: FRKLKNKKRTKHLQQYLM
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| AT2G36990.1 RNApolymerase sigma-subunit F | 1.4e-65 | 40 | Show/hide |
Query: KSITVRSKRQTERKARRTRAAEKTATSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPT
K VRSKRQ ER+A+ RA + +S KK+ Q D D L+ T +LLTA EE EL IQ LLKLE+++ +L + G EPT
Subjt: KSITVRSKRQTERKARRTRAAEKTATSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPT
Query: FAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI
+WA A G++ L+ ++ G ++K+I +N+RLV+ IAK YQ G+N QDL+QEG GL++ EKF G +F+TYA+WWI+Q++RKS+ SRTI
Subjt: FAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI
Query: RLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDS
RLP ++ +V EARK E P EE+A G+S ++L +L + P S++Q I +Q+ E+ D ET + KQ M+ + +L+
Subjt: RLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDS
Query: LNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY
L+P+ER++I+ RFG++ G+ ++L EIGEI G+S+ER+RQ+ES A +LK + L Y
Subjt: LNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY
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| AT3G53920.1 RNApolymerase sigma-subunit C | 7.1e-54 | 33.42 | Show/hide |
Query: SEELELLQDELSKSITVRSKRQTERKARRTRAAEKTATSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQ
S+ EL+ ++ + V S+R+ ++KARR+ + SL G R N++ P +Y + SR E E+S G++ + +ER++
Subjt: SEELELLQDELSKSITVRSKRQTERKARRTRAAEKTATSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQ
Query: EELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA
+L E G + + WAAAAG+N++ L + L+YG +C+D+++KS LV+ +A+NY+G G+ +DL+Q G G+++GAE+FD ++G+KFSTY +WI+++
Subjt: EELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA
Query: VRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG-RHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIK
+ +S +R + +P ++ +++ARK L + +G ++ DEEIA+ G S+K++ A K S+++K+G K E D E+ E+ +++
Subjt: VRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG-RHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIK
Query: QFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL
Q ++D+ +L+ L PRE+QV+ R+G++D R K+L+EIG+++ VS+E IR+IE A KL+++ + L+ YL
Subjt: QFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL
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| AT5G13730.1 sigma factor 4 | 2.5e-46 | 35.97 | Show/hide |
Query: STSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCR
S S L+ EE++L +++ KLE L + E NE A+ G +R+ + L ++K+ + RLV+SIA YQG G+NLQDL+QEG
Subjt: STSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCR
Query: GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQK
GL+RGAE+FD +G+K STY +WWIKQA+ ++++ +SR ++LP M E T +V EA L + R P EEIAE L++ + + ++P SL++
Subjt: GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQK
Query: IGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY
N + E++ P+ E+++ ++ MK ++E++L SL RE +V+ FG+ + +EIG+ + +SRER+RQI A +KL+N L+ Y
Subjt: IGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY
Query: LMS
S
Subjt: LMS
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