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Lag0016382 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0016382
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr12:37009764..37010250
RNA-Seq ExpressionLag0016382
SyntenyLag0016382
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032178.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.7e-1451.18Show/hide
Query:  TRSHSKEIQ-HEDSQTPVIANKML-RRMTKSVQVETAIAE-NLIEERMVEVERKINMLLKMVEEKDYKITSLKNQMESRDAVESSHTLAIK--DKVKTTI
        TRS  +EIQ  ED+ +  +A  +    MT    +   + + +  E  M E+E+K+NML+K+VEE+DYKI SLKN +ESRDA ESSH   +K  DK KT +
Subjt:  TRSHSKEIQ-HEDSQTPVIANKML-RRMTKSVQVETAIAE-NLIEERMVEVERKINMLLKMVEEKDYKITSLKNQMESRDAVESSHTLAIK--DKVKTTI

Query:  QD-QSQHSTSIVSLSVQQLQDMIMNSI
        Q+ Q Q+STSI SLSVQQLQ+MI NSI
Subjt:  QD-QSQHSTSIVSLSVQQLQDMIMNSI

KAA0041857.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.7e-1463.86Show/hide
Query:  EERMVEVERKINMLLKMVEEKDYKITSLKNQMESRDAVESSHTLAIK--DKVKTTIQD-QSQHSTSIVSLSVQQLQDMIMNSI
        E RM E+E+K+NML+K+VEE+DY+I  LKN +ESRDA ESSH   +K  DK K  +Q+ Q Q+STSIVSLSVQQLQ+MI NSI
Subjt:  EERMVEVERKINMLLKMVEEKDYKITSLKNQMESRDAVESSHTLAIK--DKVKTTIQD-QSQHSTSIVSLSVQQLQDMIMNSI

KAA0041883.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.0e-1465.06Show/hide
Query:  EERMVEVERKINMLLKMVEEKDYKITSLKNQMESRDAVESSHTLAIK--DKVKTTIQD-QSQHSTSIVSLSVQQLQDMIMNSI
        E RMVE+E+K+NML+K+VEE+DY+I SLKN +ESRDA ESSH   +K  DK K  +Q+ Q Q+STSI SLSVQQLQ+MI NSI
Subjt:  EERMVEVERKINMLLKMVEEKDYKITSLKNQMESRDAVESSHTLAIK--DKVKTTIQD-QSQHSTSIVSLSVQQLQDMIMNSI

KAA0048603.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]9.8e-1443.88Show/hide
Query:  GKITRSHSKE-IQHEDSQTPVI-----ANKMLRRMTKSVQVETAIAENLIEERMVEVERKINMLLKMVEEKDYKITSLKNQMESRDAVESSHTLAIK--D
        G ITRS SK  IQ +D + P+      A+   ++      +   +A+   E  M E+ERKIN L+K+VEE+D++IT+L+ QM +R+  ESS T  +K  D
Subjt:  GKITRSHSKE-IQHEDSQTPVI-----ANKMLRRMTKSVQVETAIAENLIEERMVEVERKINMLLKMVEEKDYKITSLKNQMESRDAVESSHTLAIK--D

Query:  KVKTTIQDQ--SQHSTSIVSLSVQQLQDMIMNSIHYNKL
        K K  +Q+    Q S S+ SLSVQQLQDMI NSI  N L
Subjt:  KVKTTIQDQ--SQHSTSIVSLSVQQLQDMIMNSIHYNKL

KAA0051517.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.0e-1652.38Show/hide
Query:  TRSHSKEIQ-HEDSQTPVIANKMLRRMTKSVQV-ETAIAENLIEERMVEVERKINMLLKMVEEKDYKITSLKNQMESRDAVESSHTLAIK--DKVKTTIQ
        T S S+EIQ  ED+    +A  +  +++K  +V ET +  +  E R+ E+E+K+NML+K+VEE+DY+I SLKN +ESRDA ESSH   +K  DK KT +Q
Subjt:  TRSHSKEIQ-HEDSQTPVIANKMLRRMTKSVQV-ETAIAENLIEERMVEVERKINMLLKMVEEKDYKITSLKNQMESRDAVESSHTLAIK--DKVKTTIQ

Query:  D-QSQHSTSIVSLSVQQLQDMIMNSI
        + Q Q+STSI SLSVQQLQ+MI NSI
Subjt:  D-QSQHSTSIVSLSVQQLQDMIMNSI

TrEMBL top hitse value%identityAlignment
A0A5A7SNH0 Ty3-gypsy retrotransposon protein2.8e-1451.18Show/hide
Query:  TRSHSKEIQ-HEDSQTPVIANKML-RRMTKSVQVETAIAE-NLIEERMVEVERKINMLLKMVEEKDYKITSLKNQMESRDAVESSHTLAIK--DKVKTTI
        TRS  +EIQ  ED+ +  +A  +    MT    +   + + +  E  M E+E+K+NML+K+VEE+DYKI SLKN +ESRDA ESSH   +K  DK KT +
Subjt:  TRSHSKEIQ-HEDSQTPVIANKML-RRMTKSVQVETAIAE-NLIEERMVEVERKINMLLKMVEEKDYKITSLKNQMESRDAVESSHTLAIK--DKVKTTI

Query:  QD-QSQHSTSIVSLSVQQLQDMIMNSI
        Q+ Q Q+STSI SLSVQQLQ+MI NSI
Subjt:  QD-QSQHSTSIVSLSVQQLQDMIMNSI

A0A5A7TJG8 Ty3-gypsy retrotransposon protein2.8e-1463.86Show/hide
Query:  EERMVEVERKINMLLKMVEEKDYKITSLKNQMESRDAVESSHTLAIK--DKVKTTIQD-QSQHSTSIVSLSVQQLQDMIMNSI
        E RM E+E+K+NML+K+VEE+DY+I  LKN +ESRDA ESSH   +K  DK K  +Q+ Q Q+STSIVSLSVQQLQ+MI NSI
Subjt:  EERMVEVERKINMLLKMVEEKDYKITSLKNQMESRDAVESSHTLAIK--DKVKTTIQD-QSQHSTSIVSLSVQQLQDMIMNSI

A0A5A7TYE9 Ty3-gypsy retrotransposon protein4.7e-1443.88Show/hide
Query:  GKITRSHSKE-IQHEDSQTPVI-----ANKMLRRMTKSVQVETAIAENLIEERMVEVERKINMLLKMVEEKDYKITSLKNQMESRDAVESSHTLAIK--D
        G ITRS SK  IQ +D + P+      A+   ++      +   +A+   E  M E+ERKIN L+K+VEE+D++IT+L+ QM +R+  ESS T  +K  D
Subjt:  GKITRSHSKE-IQHEDSQTPVI-----ANKMLRRMTKSVQVETAIAENLIEERMVEVERKINMLLKMVEEKDYKITSLKNQMESRDAVESSHTLAIK--D

Query:  KVKTTIQDQ--SQHSTSIVSLSVQQLQDMIMNSIHYNKL
        K K  +Q+    Q S S+ SLSVQQLQDMI NSI  N L
Subjt:  KVKTTIQDQ--SQHSTSIVSLSVQQLQDMIMNSIHYNKL

A0A5D3C4W1 Ty3-gypsy retrotransposon protein9.6e-1565.06Show/hide
Query:  EERMVEVERKINMLLKMVEEKDYKITSLKNQMESRDAVESSHTLAIK--DKVKTTIQD-QSQHSTSIVSLSVQQLQDMIMNSI
        E RMVE+E+K+NML+K+VEE+DY+I SLKN +ESRDA ESSH   +K  DK K  +Q+ Q Q+STSI SLSVQQLQ+MI NSI
Subjt:  EERMVEVERKINMLLKMVEEKDYKITSLKNQMESRDAVESSHTLAIK--DKVKTTIQD-QSQHSTSIVSLSVQQLQDMIMNSI

A0A5D3DLJ7 Ty3-gypsy retrotransposon protein3.9e-1652.38Show/hide
Query:  TRSHSKEIQ-HEDSQTPVIANKMLRRMTKSVQV-ETAIAENLIEERMVEVERKINMLLKMVEEKDYKITSLKNQMESRDAVESSHTLAIK--DKVKTTIQ
        T S S+EIQ  ED+    +A  +  +++K  +V ET +  +  E R+ E+E+K+NML+K+VEE+DY+I SLKN +ESRDA ESSH   +K  DK KT +Q
Subjt:  TRSHSKEIQ-HEDSQTPVIANKMLRRMTKSVQV-ETAIAENLIEERMVEVERKINMLLKMVEEKDYKITSLKNQMESRDAVESSHTLAIK--DKVKTTIQ

Query:  D-QSQHSTSIVSLSVQQLQDMIMNSI
        + Q Q+STSI SLSVQQLQ+MI NSI
Subjt:  D-QSQHSTSIVSLSVQQLQDMIMNSI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGGGCAAAATTACACGTAGTCACTCTAAGGAGATCCAACACGAAGACAGTCAAACTCCTGTCATCGCAAACAAGATGTTGAGACGCATGACAAAATCTGTTCAAGT
TGAAACCGCCATTGCAGAAAATCTGATTGAAGAACGGATGGTTGAAGTTGAGAGGAAGATCAACATGTTACTGAAGATGGTTGAAGAAAAAGACTACAAAATCACCTCTC
TCAAAAACCAGATGGAAAGTCGGGATGCCGTTGAATCAAGTCATACCCTTGCCATCAAAGACAAGGTAAAAACCACTATACAAGATCAGTCACAACATTCCACTTCTATT
GTTTCACTGTCCGTCCAACAGCTCCAGGATATGATCATGAACTCCATACACTACAACAAATTATAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGGGCAAAATTACACGTAGTCACTCTAAGGAGATCCAACACGAAGACAGTCAAACTCCTGTCATCGCAAACAAGATGTTGAGACGCATGACAAAATCTGTTCAAGT
TGAAACCGCCATTGCAGAAAATCTGATTGAAGAACGGATGGTTGAAGTTGAGAGGAAGATCAACATGTTACTGAAGATGGTTGAAGAAAAAGACTACAAAATCACCTCTC
TCAAAAACCAGATGGAAAGTCGGGATGCCGTTGAATCAAGTCATACCCTTGCCATCAAAGACAAGGTAAAAACCACTATACAAGATCAGTCACAACATTCCACTTCTATT
GTTTCACTGTCCGTCCAACAGCTCCAGGATATGATCATGAACTCCATACACTACAACAAATTATAG
Protein sequenceShow/hide protein sequence
MWGKITRSHSKEIQHEDSQTPVIANKMLRRMTKSVQVETAIAENLIEERMVEVERKINMLLKMVEEKDYKITSLKNQMESRDAVESSHTLAIKDKVKTTIQDQSQHSTSI
VSLSVQQLQDMIMNSIHYNKL