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Lag0016389 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0016389
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr12:37103224..37103981
RNA-Seq ExpressionLag0016389
SyntenyLag0016389
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8772589.1 hypothetical protein D1007_55405 [Hordeum vulgare]3.3e-1438.93Show/hide
Query:  LADERDGSALGGKIGIVEEVGGLRDGDWMGPILRIRVRLKMDRPMRRGFQLQ-DEEGKEFRCPVLYERLPDFCYECGCLGHSRRECGAVGEGVSGQLGEQ
        + D   G  +GG IG V+EV    DG  +G  LR++V+L + +P+ RG  +Q DE G++  CP  YE LP+FCY CG + H  REC      V      Q
Subjt:  LADERDGSALGGKIGIVEEVGGLRDGDWMGPILRIRVRLKMDRPMRRGFQLQ-DEEGKEFRCPVLYERLPDFCYECGCLGHSRRECGAVGEGVSGQLGEQ

Query:  YGDWMRAGGGFSEPGRRVQEGGVDSIVGRQS
        +G W+RA       GRR ++ G  S  G  S
Subjt:  YGDWMRAGGGFSEPGRRVQEGGVDSIVGRQS

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]7.3e-2250.52Show/hide
Query:  LGGKIGIVEEVGGLRDGDWMGPILRIRVRLKMDRPMRRGFQLQDEEGKEFRCPVLYERLPDFCYECGCLGHSRRECGAVGEGVSGQLGEQYGDWMRA
        LG K+G VEE+ G     W GP +R+RV++ + +P+RRG +L++ +GK+  CP+ YE+LPDFCYECG +GHS REC    + V+    EQYGDW+RA
Subjt:  LGGKIGIVEEVGGLRDGDWMGPILRIRVRLKMDRPMRRGFQLQDEEGKEFRCPVLYERLPDFCYECGCLGHSRRECGAVGEGVSGQLGEQYGDWMRA

XP_022156711.1 uncharacterized protein LOC111023555 [Momordica charantia]3.5e-1652Show/hide
Query:  LGGKIGIVEEVGGLRDGDWMGPILRIRVRLKMDRPMRRGFQLQDEEGKEFRCPVLYERLPDFCYECGCLGHSRRE
        LG ++G VEEV G+   DW+ P L +RV++ + +P+RRG +++  +GK+  CP+ YERLPDFCY CGC+GHS RE
Subjt:  LGGKIGIVEEVGGLRDGDWMGPILRIRVRLKMDRPMRRGFQLQDEEGKEFRCPVLYERLPDFCYECGCLGHSRRE

XP_030923222.1 uncharacterized protein LOC115950113 [Quercus lobata]7.3e-1441.75Show/hide
Query:  ALGGKIGIVEEVGGLRDGDWMGPILRIRVRLKMDRPMRRGFQLQDEEGKEFRCPVLYERLPDFCYECGCLGHSRRECGA--VGEGVSGQLGEQYGDWMRA
        A+G ++G+VE+V   R  D     +R+RV + + +P+RRG  ++D +G+       YERLP FCY CG LGH  R C +  V E   G++  QYGDW++A
Subjt:  ALGGKIGIVEEVGGLRDGDWMGPILRIRVRLKMDRPMRRGFQLQDEEGKEFRCPVLYERLPDFCYECGCLGHSRRECGA--VGEGVSGQLGEQYGDWMRA

Query:  GGG
         GG
Subjt:  GGG

XP_030958761.1 uncharacterized protein LOC115980672 [Quercus lobata]4.3e-1438.58Show/hide
Query:  ERDGSALGGKIGIVEEVGGLRDGDWMGPILRIRVRLKMDRPMRRGFQLQDEEGKEFRCPVL--YERLPDFCYECGCLGHSRRECGAVGEGVSGQLGEQYG
        E  G  +GG++G V EV            +RIRV + +D+P+RRG  + + EG+  RC ++  YERLP FCY CG LGH  + C      + G +  QYG
Subjt:  ERDGSALGGKIGIVEEVGGLRDGDWMGPILRIRVRLKMDRPMRRGFQLQDEEGKEFRCPVL--YERLPDFCYECGCLGHSRRECGAVGEGVSGQLGEQYG

Query:  DWMRAGG---GFSEPGRRVQEGGVDSI
        DW+RAGG     ++ G+ V EG  + +
Subjt:  DWMRAGG---GFSEPGRRVQEGGVDSI

TrEMBL top hitse value%identityAlignment
A0A5C7IT66 CCHC-type domain-containing protein2.5e-1242.02Show/hide
Query:  GSALGGKIGIVEEVGGLRDGDWMGPILRIRVRLKMDRPMRRGFQLQD-EEGKEFRCPVLYERLPDFCYECGCLGHSRRECGAVGE-GVSGQLGEQYGDWM
        G  LG  IG V EV     GD +G  +R+RV +++D P+RR  ++    +G+E   P+ YERLP FC+ CG +GHS REC + GE G+    G  YG W+
Subjt:  GSALGGKIGIVEEVGGLRDGDWMGPILRIRVRLKMDRPMRRGFQLQD-EEGKEFRCPVLYERLPDFCYECGCLGHSRRECGAVGE-GVSGQLGEQYGDWM

Query:  RAGGGFSEPGRRVQEGGVD
        RA     + GR    G VD
Subjt:  RAGGGFSEPGRRVQEGGVD

A0A6J1D765 uncharacterized protein LOC1110179023.5e-2250.52Show/hide
Query:  LGGKIGIVEEVGGLRDGDWMGPILRIRVRLKMDRPMRRGFQLQDEEGKEFRCPVLYERLPDFCYECGCLGHSRRECGAVGEGVSGQLGEQYGDWMRA
        LG K+G VEE+ G     W GP +R+RV++ + +P+RRG +L++ +GK+  CP+ YE+LPDFCYECG +GHS REC    + V+    EQYGDW+RA
Subjt:  LGGKIGIVEEVGGLRDGDWMGPILRIRVRLKMDRPMRRGFQLQDEEGKEFRCPVLYERLPDFCYECGCLGHSRRECGAVGEGVSGQLGEQYGDWMRA

A0A6J1DVS4 uncharacterized protein LOC1110235551.7e-1652Show/hide
Query:  LGGKIGIVEEVGGLRDGDWMGPILRIRVRLKMDRPMRRGFQLQDEEGKEFRCPVLYERLPDFCYECGCLGHSRRE
        LG ++G VEEV G+   DW+ P L +RV++ + +P+RRG +++  +GK+  CP+ YERLPDFCY CGC+GHS RE
Subjt:  LGGKIGIVEEVGGLRDGDWMGPILRIRVRLKMDRPMRRGFQLQDEEGKEFRCPVLYERLPDFCYECGCLGHSRRE

A0A7N2LVK2 Uncharacterized protein3.9e-1339.47Show/hide
Query:  YALADERDGSALGGKIGIVEEVGGLRDGDWMGPILRIRVRLKMDRPMRRGFQLQDEEGKEFRCPVLYERLPDFCYECGCLGHSRRECG---AVGEGVSGQ
        + ++  +  + +GGK+GI+EEV   R  D     +R+RV L + +P+RRG  L   EG+       YERLP FC+ CG LGH  + C    A G+   G 
Subjt:  YALADERDGSALGGKIGIVEEVGGLRDGDWMGPILRIRVRLKMDRPMRRGFQLQDEEGKEFRCPVLYERLPDFCYECGCLGHSRRECG---AVGEGVSGQ

Query:  LGEQYGDWMRAGGG
        +  QYG+WM+A GG
Subjt:  LGEQYGDWMRAGGG

A0A7N2R5A7 CCHC-type domain-containing protein3.3e-1237.96Show/hide
Query:  GSALGGKIGIVEEVGGLRDGDWMGPILRIRVRLKMDRPMRRGFQLQDEEGKEFRCPVLYERLPDFCYECGCLGHSRRECGAVGEGVSGQLGEQYGDWMRA
        G  +G KIG V EV  +         LR+RV +++D+P+RRG  ++++E         YERLP FCY+CG LGH  + C  +   +    G QYG+W++A
Subjt:  GSALGGKIGIVEEVGGLRDGDWMGPILRIRVRLKMDRPMRRGFQLQDEEGKEFRCPVLYERLPDFCYECGCLGHSRRECGAVGEGVSGQLGEQYGDWMRA

Query:  GGGFSEPG
        GG   + G
Subjt:  GGGFSEPG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAGTGATGTCTACGGATTCACAATGTGCCTATGCGCTGGCAGACGAGAGAGATGGCTCAGCTTTGGGTGGTAAGATCGGTATTGTGGAGGAAGTTGGGGGTTTGAG
GGATGGTGACTGGATGGGTCCGATTCTGCGAATACGGGTTCGTTTGAAGATGGATCGTCCGATGAGAAGAGGGTTTCAGCTGCAGGACGAGGAAGGTAAGGAATTTCGGT
GTCCGGTTCTGTATGAACGTCTGCCAGATTTCTGTTATGAATGTGGTTGTCTGGGGCACTCGAGGAGGGAGTGCGGGGCTGTGGGTGAAGGTGTGTCGGGGCAGCTAGGT
GAGCAGTATGGGGACTGGATGAGGGCGGGGGGGGGTTTTAGTGAGCCTGGGAGGAGGGTGCAGGAGGGAGGGGTGGATAGCATAGTGGGTCGCCAGTCAGAGACCCCAAA
ACCTCTGGTCGAGGAGTTGATGCCCTGTGAGGCTGCTACAGGGAAAGTTGGGGAAGGGGCTGCTAGTGTTCCAGGGGAGGTTGTGGAAGCTCGGGGTGATGGGCAGGGGC
AGCGGGAAGGTGAGGGTAGTGGGGCAGGGGGCGGCGTAGAGGTAGCAGTGAGTGTGGAGGGCTGGGGGATAGGGACAAGGGGAAGCAGAAGGTGGGGGATGGCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGAGTGATGTCTACGGATTCACAATGTGCCTATGCGCTGGCAGACGAGAGAGATGGCTCAGCTTTGGGTGGTAAGATCGGTATTGTGGAGGAAGTTGGGGGTTTGAG
GGATGGTGACTGGATGGGTCCGATTCTGCGAATACGGGTTCGTTTGAAGATGGATCGTCCGATGAGAAGAGGGTTTCAGCTGCAGGACGAGGAAGGTAAGGAATTTCGGT
GTCCGGTTCTGTATGAACGTCTGCCAGATTTCTGTTATGAATGTGGTTGTCTGGGGCACTCGAGGAGGGAGTGCGGGGCTGTGGGTGAAGGTGTGTCGGGGCAGCTAGGT
GAGCAGTATGGGGACTGGATGAGGGCGGGGGGGGGTTTTAGTGAGCCTGGGAGGAGGGTGCAGGAGGGAGGGGTGGATAGCATAGTGGGTCGCCAGTCAGAGACCCCAAA
ACCTCTGGTCGAGGAGTTGATGCCCTGTGAGGCTGCTACAGGGAAAGTTGGGGAAGGGGCTGCTAGTGTTCCAGGGGAGGTTGTGGAAGCTCGGGGTGATGGGCAGGGGC
AGCGGGAAGGTGAGGGTAGTGGGGCAGGGGGCGGCGTAGAGGTAGCAGTGAGTGTGGAGGGCTGGGGGATAGGGACAAGGGGAAGCAGAAGGTGGGGGATGGCGTGA
Protein sequenceShow/hide protein sequence
MRVMSTDSQCAYALADERDGSALGGKIGIVEEVGGLRDGDWMGPILRIRVRLKMDRPMRRGFQLQDEEGKEFRCPVLYERLPDFCYECGCLGHSRRECGAVGEGVSGQLG
EQYGDWMRAGGGFSEPGRRVQEGGVDSIVGRQSETPKPLVEELMPCEAATGKVGEGAASVPGEVVEARGDGQGQREGEGSGAGGGVEVAVSVEGWGIGTRGSRRWGMA