; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0016402 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0016402
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionKeratin, type II cytoskeletal 1-like
Genome locationchr12:37355178..37355770
RNA-Seq ExpressionLag0016402
SyntenyLag0016402
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.7e-1031.02Show/hide
Query:  SSQAQKFFNPGSK-TTPKLDEENYLMWKFRCWLLFEAMVCRNSLIRTMRCRLNSWFLLLLMNLLLS----KHPIGIRVLGSTGQLITAWFLGSISTSIVA
        SS   + F  G+K +  KL+++ +L+WKF+     EA    N L         S +L+   +   S     +P   +V     +LI++W LGS+S  I+ 
Subjt:  SSQAQKFFNPGSK-TTPKLDEENYLMWKFRCWLLFEAMVCRNSLIRTMRCRLNSWFLLLLMNLLLS----KHPIGIRVLGSTGQLITAWFLGSISTSIVA

Query:  ELLDCKTSRE-----------------------------GNPGLQEYFTKIKNLVDALATAGKHISHDDHVLYILGGLGPEYDPTVS
        ++L CK+++E                             G+  L+EYF KI   VDALA+  K +S DDH+LYIL GLG +Y   +S
Subjt:  ELLDCKTSRE-----------------------------GNPGLQEYFTKIKNLVDALATAGKHISHDDHVLYILGGLGPEYDPTVS

KAA0067213.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]1.9e-0929.95Show/hide
Query:  SSQAQKFFNPGSK-TTPKLDEENYLMWKFRCWLLFEAMVCRNSLIRTMRCRLNSWFLLLL----MNLLLSKHPIGIRVLGSTGQLITAWFLGSISTSIVA
        SS   + F   +K +  KL ++N+L+WKF+     EA    N L         S +L+       +   + +P   +V     +LI++W LGS+S  I+ 
Subjt:  SSQAQKFFNPGSK-TTPKLDEENYLMWKFRCWLLFEAMVCRNSLIRTMRCRLNSWFLLLL----MNLLLSKHPIGIRVLGSTGQLITAWFLGSISTSIVA

Query:  ELLDCKTSRE-----------------------------GNPGLQEYFTKIKNLVDALATAGKHISHDDHVLYILGGLGPEYDPTVS
        ++L CK+++E                              +  L+EYF KI++ VDALA+  K +S DDH+LYIL GLG +Y   +S
Subjt:  ELLDCKTSRE-----------------------------GNPGLQEYFTKIKNLVDALATAGKHISHDDHVLYILGGLGPEYDPTVS

TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.7e-1031.02Show/hide
Query:  SSQAQKFFNPGSK-TTPKLDEENYLMWKFRCWLLFEAMVCRNSLIRTMRCRLNSWFLLLLMNLLLS----KHPIGIRVLGSTGQLITAWFLGSISTSIVA
        SS   + F  G+K +  KL+++ +L+WKF+     EA    N L         S +L+   +   S     +P   +V     +LI++W LGS+S  I+ 
Subjt:  SSQAQKFFNPGSK-TTPKLDEENYLMWKFRCWLLFEAMVCRNSLIRTMRCRLNSWFLLLLMNLLLS----KHPIGIRVLGSTGQLITAWFLGSISTSIVA

Query:  ELLDCKTSRE-----------------------------GNPGLQEYFTKIKNLVDALATAGKHISHDDHVLYILGGLGPEYDPTVS
        ++L CK+++E                             G+  L+EYF KI   VDALA+  K +S DDH+LYIL GLG +Y   +S
Subjt:  ELLDCKTSRE-----------------------------GNPGLQEYFTKIKNLVDALATAGKHISHDDHVLYILGGLGPEYDPTVS

XP_022154487.1 uncharacterized protein LOC111021757 [Momordica charantia]2.3e-1532.37Show/hide
Query:  MESSASQRTASKIDSSQAQKFFNPGSKTT-PKLDEENYLMWKFRCWLL-----FEAMVCRN-----SLIRTMRCRLNSWFLLLLMNLLLSKHPIGIRVLG
        M S +S R +      QA K  NPGSK +  +L+++N L+WKF+          E+ +  N       ++T     +S          L ++P     + 
Subjt:  MESSASQRTASKIDSSQAQKFFNPGSKTT-PKLDEENYLMWKFRCWLL-----FEAMVCRN-----SLIRTMRCRLNSWFLLLLMNLLLSKHPIGIRVLG

Query:  STGQLITAWFLGSISTSIVAELLDCKTSRE-----------------------------GNPGLQEYFTKIKNLVDALATAGKHISHDDHVLYILGGLGP
           +LI+AW LGS++  I++++LDCK++RE                             GN  L++YF KIKNLVD+LA AGK +S +DH+++IL GLGP
Subjt:  STGQLITAWFLGSISTSIVAELLDCKTSRE-----------------------------GNPGLQEYFTKIKNLVDALATAGKHISHDDHVLYILGGLGP

Query:  EYDPTVS
        E+D  +S
Subjt:  EYDPTVS

XP_022156747.1 uncharacterized protein LOC111023586 [Momordica charantia]4.5e-1139.42Show/hide
Query:  QLITAWFLGSISTSIVAELLDCKTSRE-----------------------------GNPGLQEYFTKIKNLVDALATAGKHISHDDHVLYILGGLGPEYD
        +LI+ W LGS+S  I++++LDC+  +E                             G+  L+ YF KIKNLVD+LATAGK +  DDH+++IL  LGPE+D
Subjt:  QLITAWFLGSISTSIVAELLDCKTSRE-----------------------------GNPGLQEYFTKIKNLVDALATAGKHISHDDHVLYILGGLGPEYD

Query:  PTVS
          VS
Subjt:  PTVS

TrEMBL top hitse value%identityAlignment
A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-948.2e-1131.02Show/hide
Query:  SSQAQKFFNPGSK-TTPKLDEENYLMWKFRCWLLFEAMVCRNSLIRTMRCRLNSWFLLLLMNLLLS----KHPIGIRVLGSTGQLITAWFLGSISTSIVA
        SS   + F  G+K +  KL+++ +L+WKF+     EA    N L         S +L+   +   S     +P   +V     +LI++W LGS+S  I+ 
Subjt:  SSQAQKFFNPGSK-TTPKLDEENYLMWKFRCWLLFEAMVCRNSLIRTMRCRLNSWFLLLLMNLLLS----KHPIGIRVLGSTGQLITAWFLGSISTSIVA

Query:  ELLDCKTSRE-----------------------------GNPGLQEYFTKIKNLVDALATAGKHISHDDHVLYILGGLGPEYDPTVS
        ++L CK+++E                             G+  L+EYF KI   VDALA+  K +S DDH+LYIL GLG +Y   +S
Subjt:  ELLDCKTSRE-----------------------------GNPGLQEYFTKIKNLVDALATAGKHISHDDHVLYILGGLGPEYDPTVS

A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-948.2e-1131.02Show/hide
Query:  SSQAQKFFNPGSK-TTPKLDEENYLMWKFRCWLLFEAMVCRNSLIRTMRCRLNSWFLLLLMNLLLS----KHPIGIRVLGSTGQLITAWFLGSISTSIVA
        SS   + F  G+K +  KL+++ +L+WKF+     EA    N L         S +L+   +   S     +P   +V     +LI++W LGS+S  I+ 
Subjt:  SSQAQKFFNPGSK-TTPKLDEENYLMWKFRCWLLFEAMVCRNSLIRTMRCRLNSWFLLLLMNLLLS----KHPIGIRVLGSTGQLITAWFLGSISTSIVA

Query:  ELLDCKTSRE-----------------------------GNPGLQEYFTKIKNLVDALATAGKHISHDDHVLYILGGLGPEYDPTVS
        ++L CK+++E                             G+  L+EYF KI   VDALA+  K +S DDH+LYIL GLG +Y   +S
Subjt:  ELLDCKTSRE-----------------------------GNPGLQEYFTKIKNLVDALATAGKHISHDDHVLYILGGLGPEYDPTVS

A0A5D3D5T2 Keratin, type II cytoskeletal 1-like9.1e-1029.95Show/hide
Query:  SSQAQKFFNPGSK-TTPKLDEENYLMWKFRCWLLFEAMVCRNSLIRTMRCRLNSWFLLLL----MNLLLSKHPIGIRVLGSTGQLITAWFLGSISTSIVA
        SS   + F   +K +  KL ++N+L+WKF+     EA    N L         S +L+       +   + +P   +V     +LI++W LGS+S  I+ 
Subjt:  SSQAQKFFNPGSK-TTPKLDEENYLMWKFRCWLLFEAMVCRNSLIRTMRCRLNSWFLLLL----MNLLLSKHPIGIRVLGSTGQLITAWFLGSISTSIVA

Query:  ELLDCKTSRE-----------------------------GNPGLQEYFTKIKNLVDALATAGKHISHDDHVLYILGGLGPEYDPTVS
        ++L CK+++E                              +  L+EYF KI++ VDALA+  K +S DDH+LYIL GLG +Y   +S
Subjt:  ELLDCKTSRE-----------------------------GNPGLQEYFTKIKNLVDALATAGKHISHDDHVLYILGGLGPEYDPTVS

A0A6J1DLT9 uncharacterized protein LOC1110217571.1e-1532.37Show/hide
Query:  MESSASQRTASKIDSSQAQKFFNPGSKTT-PKLDEENYLMWKFRCWLL-----FEAMVCRN-----SLIRTMRCRLNSWFLLLLMNLLLSKHPIGIRVLG
        M S +S R +      QA K  NPGSK +  +L+++N L+WKF+          E+ +  N       ++T     +S          L ++P     + 
Subjt:  MESSASQRTASKIDSSQAQKFFNPGSKTT-PKLDEENYLMWKFRCWLL-----FEAMVCRN-----SLIRTMRCRLNSWFLLLLMNLLLSKHPIGIRVLG

Query:  STGQLITAWFLGSISTSIVAELLDCKTSRE-----------------------------GNPGLQEYFTKIKNLVDALATAGKHISHDDHVLYILGGLGP
           +LI+AW LGS++  I++++LDCK++RE                             GN  L++YF KIKNLVD+LA AGK +S +DH+++IL GLGP
Subjt:  STGQLITAWFLGSISTSIVAELLDCKTSRE-----------------------------GNPGLQEYFTKIKNLVDALATAGKHISHDDHVLYILGGLGP

Query:  EYDPTVS
        E+D  +S
Subjt:  EYDPTVS

A0A6J1DSS1 uncharacterized protein LOC1110235862.2e-1139.42Show/hide
Query:  QLITAWFLGSISTSIVAELLDCKTSRE-----------------------------GNPGLQEYFTKIKNLVDALATAGKHISHDDHVLYILGGLGPEYD
        +LI+ W LGS+S  I++++LDC+  +E                             G+  L+ YF KIKNLVD+LATAGK +  DDH+++IL  LGPE+D
Subjt:  QLITAWFLGSISTSIVAELLDCKTSRE-----------------------------GNPGLQEYFTKIKNLVDALATAGKHISHDDHVLYILGGLGPEYD

Query:  PTVS
          VS
Subjt:  PTVS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTCTTCTGCTTCCCAGCGTACTGCTTCTAAAATAGATTCTTCTCAAGCGCAGAAATTCTTCAATCCTGGGAGTAAAACAACACCGAAATTGGATGAAGAAAATTA
CCTGATGTGGAAATTCAGGTGCTGGTTACTCTTCGAGGCCATGGTCTGCAGAAATTCATTGATTCGGACTATGAGGTGCCGTCTAAATTCTTGGTTTCTACTGCTACTGA
TGAATCTTCTTCTATCAAAACACCCAATCGGAATACGAGTACTGGGTTCGACAGGACAATTGATCACCGCTTGGTTTCTTGGTTCAATTTCAACCTCAATTGTGGCTGAA
TTGCTTGATTGTAAGACTTCTCGCGAGGGAAATCCAGGGTTACAAGAGTACTTTACCAAAATCAAGAATCTTGTTGATGCATTAGCCACTGCTGGTAAGCATATCTCTCA
CGATGATCATGTGCTGTATATTCTTGGTGGTCTGGGACCAGAATACGATCCAACCGTGTCGTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGTCTTCTGCTTCCCAGCGTACTGCTTCTAAAATAGATTCTTCTCAAGCGCAGAAATTCTTCAATCCTGGGAGTAAAACAACACCGAAATTGGATGAAGAAAATTA
CCTGATGTGGAAATTCAGGTGCTGGTTACTCTTCGAGGCCATGGTCTGCAGAAATTCATTGATTCGGACTATGAGGTGCCGTCTAAATTCTTGGTTTCTACTGCTACTGA
TGAATCTTCTTCTATCAAAACACCCAATCGGAATACGAGTACTGGGTTCGACAGGACAATTGATCACCGCTTGGTTTCTTGGTTCAATTTCAACCTCAATTGTGGCTGAA
TTGCTTGATTGTAAGACTTCTCGCGAGGGAAATCCAGGGTTACAAGAGTACTTTACCAAAATCAAGAATCTTGTTGATGCATTAGCCACTGCTGGTAAGCATATCTCTCA
CGATGATCATGTGCTGTATATTCTTGGTGGTCTGGGACCAGAATACGATCCAACCGTGTCGTCTTGA
Protein sequenceShow/hide protein sequence
MESSASQRTASKIDSSQAQKFFNPGSKTTPKLDEENYLMWKFRCWLLFEAMVCRNSLIRTMRCRLNSWFLLLLMNLLLSKHPIGIRVLGSTGQLITAWFLGSISTSIVAE
LLDCKTSREGNPGLQEYFTKIKNLVDALATAGKHISHDDHVLYILGGLGPEYDPTVSS