; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0016449 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0016449
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTransducin/WD40 repeat-like superfamily protein
Genome locationchr12:37881876..37882564
RNA-Seq ExpressionLag0016449
SyntenyLag0016449
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR001680 - WD40 repeat
IPR015943 - WD40/YVTN repeat-like-containing domain superfamily
IPR036322 - WD40-repeat-containing domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045853.1 putative WD repeat-containing protein alr3466-like protein [Cucumis melo var. makuwa]2.5e-3394.87Show/hide
Query:  MKPSNYVEGRRRRNLWIKHFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLVQT
        MKPSNYVEGRRRR+LWIKHFDAISSLSLSED SFLYS SWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLV T
Subjt:  MKPSNYVEGRRRRNLWIKHFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLVQT

KAG6571415.1 Protein JINGUBANG, partial [Cucurbita argyrosperma subsp. sororia]2.1e-3292.31Show/hide
Query:  MKPSNYVEGRRRRNLWIKHFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLVQT
        MKP NY+EGRRRRNLWIKHFDAISSLSLSED +FLYS SWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLV T
Subjt:  MKPSNYVEGRRRRNLWIKHFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLVQT

XP_008457956.2 PREDICTED: uncharacterized WD repeat-containing protein alr3466-like [Cucumis melo]2.5e-3394.87Show/hide
Query:  MKPSNYVEGRRRRNLWIKHFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLVQT
        MKPSNYVEGRRRR+LWIKHFDAISSLSLSED SFLYS SWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLV T
Subjt:  MKPSNYVEGRRRRNLWIKHFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLVQT

XP_022971707.1 protein JINGUBANG-like [Cucurbita maxima]2.1e-3292.31Show/hide
Query:  MKPSNYVEGRRRRNLWIKHFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLVQT
        MKP NY+EGRRRRNLWIKHFDAISSLSLSED +FLYS SWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLV T
Subjt:  MKPSNYVEGRRRRNLWIKHFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLVQT

XP_038902149.1 protein JINGUBANG-like [Benincasa hispida]6.6e-3496.15Show/hide
Query:  MKPSNYVEGRRRRNLWIKHFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLVQT
        MKPSNYVEGRRRRNLWIKHFDAISSLSLSED SFLYS SWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLV T
Subjt:  MKPSNYVEGRRRRNLWIKHFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLVQT

TrEMBL top hitse value%identityAlignment
A0A0A0LQ12 WD_REPEATS_REGION domain-containing protein1.8e-3289.74Show/hide
Query:  MKPSNYVEGRRRRNLWIKHFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLVQT
        M+PSNYVEGRRRRNLWIKHFDAISSLSLSED +FLYS SWDKTFKVWRVSDSKCLESI+AH+DAVNTLVSSIDG+V T
Subjt:  MKPSNYVEGRRRRNLWIKHFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLVQT

A0A1S3C693 uncharacterized WD repeat-containing protein alr3466-like1.2e-3394.87Show/hide
Query:  MKPSNYVEGRRRRNLWIKHFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLVQT
        MKPSNYVEGRRRR+LWIKHFDAISSLSLSED SFLYS SWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLV T
Subjt:  MKPSNYVEGRRRRNLWIKHFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLVQT

A0A5D3CQB4 Putative WD repeat-containing protein alr3466-like protein1.2e-3394.87Show/hide
Query:  MKPSNYVEGRRRRNLWIKHFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLVQT
        MKPSNYVEGRRRR+LWIKHFDAISSLSLSED SFLYS SWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLV T
Subjt:  MKPSNYVEGRRRRNLWIKHFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLVQT

A0A6J1EQK0 protein JINGUBANG-like1.0e-3292.31Show/hide
Query:  MKPSNYVEGRRRRNLWIKHFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLVQT
        MKP NY+EGRRRRNLWIKHFDAISSLSLSED +FLYS SWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLV T
Subjt:  MKPSNYVEGRRRRNLWIKHFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLVQT

A0A6J1I2Q2 protein JINGUBANG-like1.0e-3292.31Show/hide
Query:  MKPSNYVEGRRRRNLWIKHFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLVQT
        MKP NY+EGRRRRNLWIKHFDAISSLSLSED +FLYS SWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLV T
Subjt:  MKPSNYVEGRRRRNLWIKHFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLVQT

SwissProt top hitse value%identityAlignment
O43818 U3 small nucleolar RNA-interacting protein 22.5e-0437.7Show/hide
Query:  HFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLVQTC
        H DA+S L+       LYSTS D++ KVW V+++  +E++  H DA    V+++D L + C
Subjt:  HFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLVQTC

O48716 Protein JINGUBANG1.0e-2161.04Show/hide
Query:  MKPSNYVEGRRRRN-LWIKHFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLV
        +KP NYVE ++ R  LWIKH DA+S LSL+++   LYS SWD+T KVWR++DSKCLESI AHDDAVN++VS+ + +V
Subjt:  MKPSNYVEGRRRRN-LWIKHFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLV

Q8W117 Suppressor of mec-8 and unc-52 protein homolog 11.0e-0529.92Show/hide
Query:  NYVEGRRRRNL-------WIKHFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDG--LVQTCVCRVARKNTHSLKTHE
        +Y+ G+ +++L       ++ H D +  +  S D+  L S S D   K+WR+    C+    AH   V +L  S DG  L+ T   + AR   H LK+ +
Subjt:  NYVEGRRRRNL-------WIKHFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDG--LVQTCVCRVARKNTHSLKTHE

Query:  RLFVFERPTAAGNRKTHTTLTPDLSHI
         L  F   T+  N   H   T D S I
Subjt:  RLFVFERPTAAGNRKTHTTLTPDLSHI

Q8YRI1 Uncharacterized WD repeat-containing protein alr34661.5e-0439.29Show/hide
Query:  HFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDG
        H   ++S+  + D S L S S DKT ++W +S SKCL + Q H + VN++  + DG
Subjt:  HFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDG

Q8YV57 Uncharacterized WD repeat-containing protein all21246.0e-0638.36Show/hide
Query:  HFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLVQTCVCRVARKNTHSL
        H D ++SLS S D   L S S DKT K+WR++D K +++++ H+D+V  +  S DG     +   +R NT  L
Subjt:  HFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLVQTCVCRVARKNTHSL

Arabidopsis top hitse value%identityAlignment
AT1G47610.1 Transducin/WD40 repeat-like superfamily protein1.6e-2255.45Show/hide
Query:  MKPSNYVEGRR-RRNLWIKHFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVS--------SIDGLVQTCVCRVARKNT-HS
        +KPSNYVE RR R  LWIKH DA+S LSL+ED   LYS SWD+T KVWR+ D KC+ESI+AHDDAVN++ +        S DG V+     +  K T HS
Subjt:  MKPSNYVEGRR-RRNLWIKHFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVS--------SIDGLVQTCVCRVARKNT-HS

Query:  L
        L
Subjt:  L

AT1G49450.1 Transducin/WD40 repeat-like superfamily protein4.6e-2570.89Show/hide
Query:  MKPSNYVEGRRRRN-LWIKHFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLVQT
        + P NYVE RRR+N L I+HFDA+S LSL+ED   LYS SWDKT KVWR+SDSKCLESI+AHDDAVNT+VS  D LV T
Subjt:  MKPSNYVEGRRRRN-LWIKHFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLVQT

AT2G26490.1 Transducin/WD40 repeat-like superfamily protein7.3e-2361.04Show/hide
Query:  MKPSNYVEGRRRRN-LWIKHFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLV
        +KP NYVE ++ R  LWIKH DA+S LSL+++   LYS SWD+T KVWR++DSKCLESI AHDDAVN++VS+ + +V
Subjt:  MKPSNYVEGRRRRN-LWIKHFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLV

AT3G18950.1 Transducin/WD40 repeat-like superfamily protein1.9e-2364.56Show/hide
Query:  MKPSNYVEGRRRRN-LWIKHFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLVQT
        + P NYVE RRR+N L I+H+DA+S LSL+E+   LYS SWDKT KVWR+SDSKCLESIQAHDDA+NT+ +  D L+ T
Subjt:  MKPSNYVEGRRRRN-LWIKHFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLVQT

AT3G50390.1 Transducin/WD40 repeat-like superfamily protein3.4e-2060Show/hide
Query:  PSNYVEGRRRRN----LWIKHFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLVQT
        PS+Y    RR      L  +H DAIS L+LSED   LYS SWDKTFKVWRVSD +C+ES+ AH+DAVN +VS  DGLV T
Subjt:  PSNYVEGRRRRN----LWIKHFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLVQT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAACCGAGCAATTACGTGGAGGGGAGGCGGCGGAGGAATCTGTGGATAAAGCATTTCGATGCGATTTCGTCTCTGAGTTTGAGCGAGGACAATTCGTTTCTATACTC
TACTTCGTGGGACAAAACGTTCAAGGTCTGGAGGGTGTCGGATTCCAAATGCTTGGAGTCGATTCAGGCTCACGACGACGCCGTCAACACTCTCGTTTCCAGTATTGATG
GGCTGGTTCAAACGTGTGTGTGCCGTGTAGCTCGAAAAAATACCCACAGCTTGAAGACCCACGAGCGTCTATTTGTGTTCGAAAGACCCACGGCTGCTGGAAATCGGAAA
ACCCACACCACCCTCACCCCAGATCTATCCCACATCTACGCCAGAAAACGCGAAATCGAGAGGAATAACTTAGTCGGAATAATCGCGAAACCAAGAACCACCTGTGACCG
ACGACGGCGGAGGCGACGACGACCGGCGACGACAGAAGTGGCAGCTGCCGGCGGCCTGTTTGGTCCAGCTACCGTCGGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAACCGAGCAATTACGTGGAGGGGAGGCGGCGGAGGAATCTGTGGATAAAGCATTTCGATGCGATTTCGTCTCTGAGTTTGAGCGAGGACAATTCGTTTCTATACTC
TACTTCGTGGGACAAAACGTTCAAGGTCTGGAGGGTGTCGGATTCCAAATGCTTGGAGTCGATTCAGGCTCACGACGACGCCGTCAACACTCTCGTTTCCAGTATTGATG
GGCTGGTTCAAACGTGTGTGTGCCGTGTAGCTCGAAAAAATACCCACAGCTTGAAGACCCACGAGCGTCTATTTGTGTTCGAAAGACCCACGGCTGCTGGAAATCGGAAA
ACCCACACCACCCTCACCCCAGATCTATCCCACATCTACGCCAGAAAACGCGAAATCGAGAGGAATAACTTAGTCGGAATAATCGCGAAACCAAGAACCACCTGTGACCG
ACGACGGCGGAGGCGACGACGACCGGCGACGACAGAAGTGGCAGCTGCCGGCGGCCTGTTTGGTCCAGCTACCGTCGGCTAG
Protein sequenceShow/hide protein sequence
MKPSNYVEGRRRRNLWIKHFDAISSLSLSEDNSFLYSTSWDKTFKVWRVSDSKCLESIQAHDDAVNTLVSSIDGLVQTCVCRVARKNTHSLKTHERLFVFERPTAAGNRK
THTTLTPDLSHIYARKREIERNNLVGIIAKPRTTCDRRRRRRRRPATTEVAAAGGLFGPATVG