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Lag0016476 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0016476
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionBeta-amylase
Genome locationchr12:38159381..38159941
RNA-Seq ExpressionLag0016476
SyntenyLag0016476
Gene Ontology termsGO:0000272 - polysaccharide catabolic process (biological process)
GO:0016161 - beta-amylase activity (molecular function)
GO:0102229 - amylopectin maltohydrolase activity (molecular function)
InterPro domainsIPR001554 - Glycoside hydrolase, family 14
IPR017853 - Glycoside hydrolase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6574880.1 Beta-amylase 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.6e-4971.25Show/hide
Query:  MATSSLHQIGTLFAATTAKCNDHPPQSKAPASAALARTVPTAAILRSRAPNRERENVTVSSSSDGFRRSLSVACRGSAAAEEGERG---RGVPVFVMMPL
        MA  S++QIGTLF A  AKCNDH  ++K PAS A  RTV    ILRSR  NRERE V + SS D FRRSL+V+CR S AAEE E+G   RGV VFVMMPL
Subjt:  MATSSLHQIGTLFAATTAKCNDHPPQSKAPASAALARTVPTAAILRSRAPNRERENVTVSSSSDGFRRSLSVACRGSAAAEEGERG---RGVPVFVMMPL

Query:  ESVTMENKVKRRKAMEMSFQAMEWAGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAMAS
        + VTMENKVK+RKAME+SFQAM+ AGVEGVMVDVWWGLVEKERPGEYNFGGYEE  AMA+
Subjt:  ESVTMENKVKRRKAMEMSFQAMEWAGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAMAS

KAG7013452.1 Beta-amylase 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]1.6e-4971.25Show/hide
Query:  MATSSLHQIGTLFAATTAKCNDHPPQSKAPASAALARTVPTAAILRSRAPNRERENVTVSSSSDGFRRSLSVACRGSAAAEEGERG---RGVPVFVMMPL
        MA  S++QIGTLF A  AKCNDH  ++K PAS A  RTV    ILRSR  NRERE V + SS D FRRSL+V+CR S AAEE E+G   RGV VFVMMPL
Subjt:  MATSSLHQIGTLFAATTAKCNDHPPQSKAPASAALARTVPTAAILRSRAPNRERENVTVSSSSDGFRRSLSVACRGSAAAEEGERG---RGVPVFVMMPL

Query:  ESVTMENKVKRRKAMEMSFQAMEWAGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAMAS
        + VTMENKVK+RKAME+SFQAM+ AGVEGVMVDVWWGLVEKERPGEYNFGGYEE  AMA+
Subjt:  ESVTMENKVKRRKAMEMSFQAMEWAGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAMAS

XP_022959502.1 beta-amylase 1, chloroplastic-like [Cucurbita moschata]1.2e-4971.25Show/hide
Query:  MATSSLHQIGTLFAATTAKCNDHPPQSKAPASAALARTVPTAAILRSRAPNRERENVTVSSSSDGFRRSLSVACRGSAAAEEGERG---RGVPVFVMMPL
        MA  S++QIGTLF A  AKCNDH  ++K PAS A  RTV    ILRSR  NRERE V + SS D FRRSL+V+CR S AAEE E+G   RGV VFVMMPL
Subjt:  MATSSLHQIGTLFAATTAKCNDHPPQSKAPASAALARTVPTAAILRSRAPNRERENVTVSSSSDGFRRSLSVACRGSAAAEEGERG---RGVPVFVMMPL

Query:  ESVTMENKVKRRKAMEMSFQAMEWAGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAMAS
        + VTMENKVK+RKAME+SFQAM+ AGVEGVMVDVWWGLVEKERPGEYNFGGYEE  AMA+
Subjt:  ESVTMENKVKRRKAMEMSFQAMEWAGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAMAS

XP_023006377.1 beta-amylase 1, chloroplastic-like [Cucurbita maxima]1.2e-4970.62Show/hide
Query:  MATSSLHQIGTLFAATTAKCNDHPPQSKAPASAALARTVPTAAILRSRAPNRERENVTVSSSSDGFRRSLSVACRGSAAAEEGERG---RGVPVFVMMPL
        MA  S++QIGTLF A  AKCNDH  ++K PA  A  RTVP   ILRSR  NRERE V + SS D FRRS +V+CR S AAEE E+G   RGV VFVMMPL
Subjt:  MATSSLHQIGTLFAATTAKCNDHPPQSKAPASAALARTVPTAAILRSRAPNRERENVTVSSSSDGFRRSLSVACRGSAAAEEGERG---RGVPVFVMMPL

Query:  ESVTMENKVKRRKAMEMSFQAMEWAGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAMAS
        + VTMENKVK+RKAME+SFQAM+ AGVEGVMVDVWWGLVEKERPGEYNFGGYEE  AMA+
Subjt:  ESVTMENKVKRRKAMEMSFQAMEWAGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAMAS

XP_023549359.1 beta-amylase 1, chloroplastic-like [Cucurbita pepo subsp. pepo]1.9e-5071.25Show/hide
Query:  MATSSLHQIGTLFAATTAKCNDHPPQSKAPASAALARTVPTAAILRSRAPNRERENVTVSSSSDGFRRSLSVACRGSAAAEEGERG---RGVPVFVMMPL
        MA  S++QIGTLF  T AKCNDH  ++  PAS A+ RTVP   ILRSR  NRERE V + SS D FRRSL+V+CR S AAEE E+G   RGV VFVMMPL
Subjt:  MATSSLHQIGTLFAATTAKCNDHPPQSKAPASAALARTVPTAAILRSRAPNRERENVTVSSSSDGFRRSLSVACRGSAAAEEGERG---RGVPVFVMMPL

Query:  ESVTMENKVKRRKAMEMSFQAMEWAGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAMAS
        + VTMENKVK+RKAME+SFQAM+ AGVEGVMVDVWWGLVEKERPGEYNFGGYEE  AMA+
Subjt:  ESVTMENKVKRRKAMEMSFQAMEWAGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAMAS

TrEMBL top hitse value%identityAlignment
A0A0A0LIF1 Beta-amylase3.3e-4568.94Show/hide
Query:  MATSSLHQIGTLFAATTAKCNDHPPQSKAPASAALARTVPTAAILRSRAPNRERENVTVSSSSDGFRRSLSVACRGS-AAAEEGERG---RGVPVFVMMP
        MA  S+HQIGTLF AT   CNDH   S+ P S A  R VPTAAILRSR  NRERE V V SS D   RS S++C  S AA EE E+G    GV VFVMM 
Subjt:  MATSSLHQIGTLFAATTAKCNDHPPQSKAPASAALARTVPTAAILRSRAPNRERENVTVSSSSDGFRRSLSVACRGS-AAAEEGERG---RGVPVFVMMP

Query:  LESVTMENKVKRRKAMEMSFQAMEWAGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAMAS
        L+SVTM NKV RRKAME+SFQAM+ AGVEGVMVDVWWGLVEKERPGEYNFGGYE+LL MA+
Subjt:  LESVTMENKVKRRKAMEMSFQAMEWAGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAMAS

A0A1S3CDI9 Beta-amylase1.7e-4166.46Show/hide
Query:  MATSSLHQIGTLFAATTAKCNDHPPQSKAPASAALARTVPTAAILRSRAPNRERENVTVSSSSDGFRRSLSVACRGSAAA---EEGERGR-GVPVFVMMP
        MA  S+HQI  LF AT   CNDH   S+ P S A  R VP AAILRSR  NRERE V + SS D   RS S++C  S AA   EE E  R GV VFVMM 
Subjt:  MATSSLHQIGTLFAATTAKCNDHPPQSKAPASAALARTVPTAAILRSRAPNRERENVTVSSSSDGFRRSLSVACRGSAAA---EEGERGR-GVPVFVMMP

Query:  LESVTMENKVKRRKAMEMSFQAMEWAGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAMAS
        L+SVTM NKV RRKAME+SFQAM+ AGVEGVMVDVWWGLVEKERPGEYNFGGYE LL MA+
Subjt:  LESVTMENKVKRRKAMEMSFQAMEWAGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAMAS

A0A5D3D0N5 Beta-amylase1.7e-4166.46Show/hide
Query:  MATSSLHQIGTLFAATTAKCNDHPPQSKAPASAALARTVPTAAILRSRAPNRERENVTVSSSSDGFRRSLSVACRGSAAA---EEGERGR-GVPVFVMMP
        MA  S+HQI  LF AT   CNDH   S+ P S A  R VP AAILRSR  NRERE V + SS D   RS S++C  S AA   EE E  R GV VFVMM 
Subjt:  MATSSLHQIGTLFAATTAKCNDHPPQSKAPASAALARTVPTAAILRSRAPNRERENVTVSSSSDGFRRSLSVACRGSAAA---EEGERGR-GVPVFVMMP

Query:  LESVTMENKVKRRKAMEMSFQAMEWAGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAMAS
        L+SVTM NKV RRKAME+SFQAM+ AGVEGVMVDVWWGLVEKERPGEYNFGGYE LL MA+
Subjt:  LESVTMENKVKRRKAMEMSFQAMEWAGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAMAS

A0A6J1H4Q2 Beta-amylase5.8e-5071.25Show/hide
Query:  MATSSLHQIGTLFAATTAKCNDHPPQSKAPASAALARTVPTAAILRSRAPNRERENVTVSSSSDGFRRSLSVACRGSAAAEEGERG---RGVPVFVMMPL
        MA  S++QIGTLF A  AKCNDH  ++K PAS A  RTV    ILRSR  NRERE V + SS D FRRSL+V+CR S AAEE E+G   RGV VFVMMPL
Subjt:  MATSSLHQIGTLFAATTAKCNDHPPQSKAPASAALARTVPTAAILRSRAPNRERENVTVSSSSDGFRRSLSVACRGSAAAEEGERG---RGVPVFVMMPL

Query:  ESVTMENKVKRRKAMEMSFQAMEWAGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAMAS
        + VTMENKVK+RKAME+SFQAM+ AGVEGVMVDVWWGLVEKERPGEYNFGGYEE  AMA+
Subjt:  ESVTMENKVKRRKAMEMSFQAMEWAGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAMAS

A0A6J1KVP0 Beta-amylase5.8e-5070.62Show/hide
Query:  MATSSLHQIGTLFAATTAKCNDHPPQSKAPASAALARTVPTAAILRSRAPNRERENVTVSSSSDGFRRSLSVACRGSAAAEEGERG---RGVPVFVMMPL
        MA  S++QIGTLF A  AKCNDH  ++K PA  A  RTVP   ILRSR  NRERE V + SS D FRRS +V+CR S AAEE E+G   RGV VFVMMPL
Subjt:  MATSSLHQIGTLFAATTAKCNDHPPQSKAPASAALARTVPTAAILRSRAPNRERENVTVSSSSDGFRRSLSVACRGSAAAEEGERG---RGVPVFVMMPL

Query:  ESVTMENKVKRRKAMEMSFQAMEWAGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAMAS
        + VTMENKVK+RKAME+SFQAM+ AGVEGVMVDVWWGLVEKERPGEYNFGGYEE  AMA+
Subjt:  ESVTMENKVKRRKAMEMSFQAMEWAGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAMAS

SwissProt top hitse value%identityAlignment
O23553 Beta-amylase 3, chloroplastic4.1e-1658.21Show/hide
Query:  VPVFVMMPLESVTMENKVKRRKAMEMSFQAMEWAGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAM
        VPVFVM+PL++VTM   + + +AM  S  A++ AGVEGVMVD WWGLVEK+ P  YN+ GY EL+ M
Subjt:  VPVFVMMPLESVTMENKVKRRKAMEMSFQAMEWAGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAM

Q10RZ1 Beta-amylase 2, chloroplastic1.6e-1740.12Show/hide
Query:  MATSSLHQIGTLFAATTAKCNDHPPQSKAPASAALARTVPTAAILRSRAPNRERENVTVSSSSDGFRRSLSVACRG--SAAAEE------GERGR--GVP
        M+ +  HQ G   AA  A     P   +    AA A TV   A+  + AP+ + +  TV  ++      L +A +    +  EE      GE  R  GVP
Subjt:  MATSSLHQIGTLFAATTAKCNDHPPQSKAPASAALARTVPTAAILRSRAPNRERENVTVSSSSDGFRRSLSVACRG--SAAAEE------GERGR--GVP

Query:  VFVMMPLESVTME-NKVKRRKAMEMSFQAMEWAGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAMA
        V+VMMPL++V  + N + RRKA+E S +A++ AG EG+MVDVWWG+ E E PG YNF GY EL+ MA
Subjt:  VFVMMPLESVTME-NKVKRRKAMEMSFQAMEWAGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAMA

Q9AV88 Beta-amylase 1, chloroplastic3.3e-1845.93Show/hide
Query:  SAALARTVPTAAILRSRAPNRERENVTVSSSSDGFRRSLSVAC---------RGSAAAEEGERGRGVPVFVMMPLESVT-MENKVKRRKAMEMSFQAMEW
        SAA A    TA   R RA +      + SS++   R     AC         R  AAA    R  GVPVFVMMPL++V+   + + RRKA+  S  A++ 
Subjt:  SAALARTVPTAAILRSRAPNRERENVTVSSSSDGFRRSLSVAC---------RGSAAAEEGERGRGVPVFVMMPLESVT-MENKVKRRKAMEMSFQAMEW

Query:  AGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAMA
        AGVEG+MVDVWWG+VE E PG YNF GY EL+ MA
Subjt:  AGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAMA

Q9FM68 Inactive beta-amylase 4, chloroplastic1.0e-1144.3Show/hide
Query:  RGRGVPVFVMMPLESVTME----NKVKRRKAMEMSFQAMEWAGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAMASSA
        R + VPVFVMMP+++  ++     K+KR KA+ +S +A++ AGV G+ V+VWWG+VE+  P E+ +  YEEL  + S A
Subjt:  RGRGVPVFVMMPLESVTME----NKVKRRKAMEMSFQAMEWAGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAMASSA

Q9LIR6 Beta-amylase 1, chloroplastic2.8e-2544.83Show/hide
Query:  MATSSLHQIGTLFAATTAKCNDHPPQSKAPASAALARTVPTAAILRSRAPNRERENVTVSSSSDGFRRSLSVACRGSAAA------------EEG-----
        MA +  HQ+G L A T  K  +    S    S   AR +   A+ R+   +    +  +S      R  LSVAC+  A               EG     
Subjt:  MATSSLHQIGTLFAATTAKCNDHPPQSKAPASAALARTVPTAAILRSRAPNRERENVTVSSSSDGFRRSLSVACRGSAAA------------EEG-----

Query:  -ERGRGVPVFVMMPLESVTMENKVKRRKAMEMSFQAMEWAGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAMA
         E G GVPVFVMMPL+SVTM N V RRKAM+ S QA++ AGVEG+M+DVWWGLVEKE PG YN+GGY ELL +A
Subjt:  -ERGRGVPVFVMMPLESVTMENKVKRRKAMEMSFQAMEWAGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAMA

Arabidopsis top hitse value%identityAlignment
AT2G32290.1 beta-amylase 62.0e-1037.14Show/hide
Query:  VPVFVMMPLESVTMENKVKRRKAMEMSFQAMEWAGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAMASS
        VPV+VM+ L  +T +N ++  ++++   + ++ + V+GVMVDVWWG+VE + P +Y +  Y  L A+  S
Subjt:  VPVFVMMPLESVTMENKVKRRKAMEMSFQAMEWAGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAMASS

AT3G23920.1 beta-amylase 12.0e-2644.83Show/hide
Query:  MATSSLHQIGTLFAATTAKCNDHPPQSKAPASAALARTVPTAAILRSRAPNRERENVTVSSSSDGFRRSLSVACRGSAAA------------EEG-----
        MA +  HQ+G L A T  K  +    S    S   AR +   A+ R+   +    +  +S      R  LSVAC+  A               EG     
Subjt:  MATSSLHQIGTLFAATTAKCNDHPPQSKAPASAALARTVPTAAILRSRAPNRERENVTVSSSSDGFRRSLSVACRGSAAA------------EEG-----

Query:  -ERGRGVPVFVMMPLESVTMENKVKRRKAMEMSFQAMEWAGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAMA
         E G GVPVFVMMPL+SVTM N V RRKAM+ S QA++ AGVEG+M+DVWWGLVEKE PG YN+GGY ELL +A
Subjt:  -ERGRGVPVFVMMPLESVTMENKVKRRKAMEMSFQAMEWAGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAMA

AT4G15210.1 beta-amylase 53.4e-1042.65Show/hide
Query:  VPVFVMMPLESVTMENKVKRRKAMEMSFQAM-EWAGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAM
        VPV+VM+PL  V +EN     + +E   + + E AGV+GVMVDVWWG++E + P +Y++  Y+ L  +
Subjt:  VPVFVMMPLESVTMENKVKRRKAMEMSFQAM-EWAGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAM

AT4G17090.1 chloroplast beta-amylase2.9e-1758.21Show/hide
Query:  VPVFVMMPLESVTMENKVKRRKAMEMSFQAMEWAGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAM
        VPVFVM+PL++VTM   + + +AM  S  A++ AGVEGVMVD WWGLVEK+ P  YN+ GY EL+ M
Subjt:  VPVFVMMPLESVTMENKVKRRKAMEMSFQAMEWAGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAM

AT5G55700.1 beta-amylase 47.4e-1344.3Show/hide
Query:  RGRGVPVFVMMPLESVTME----NKVKRRKAMEMSFQAMEWAGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAMASSA
        R + VPVFVMMP+++  ++     K+KR KA+ +S +A++ AGV G+ V+VWWG+VE+  P E+ +  YEEL  + S A
Subjt:  RGRGVPVFVMMPLESVTME----NKVKRRKAMEMSFQAMEWAGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAMASSA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACGAGTTCACTGCACCAGATCGGTACTCTGTTTGCGGCAACGACTGCGAAATGCAACGATCATCCACCTCAATCGAAAGCTCCGGCGAGTGCTGCGCTGGCGAG
GACGGTTCCTACGGCGGCGATTTTGCGATCTAGGGCTCCGAATCGAGAAAGAGAGAACGTAACCGTATCATCGTCGTCGGACGGATTCCGGCGGAGTTTGTCTGTGGCGT
GCAGAGGATCGGCAGCGGCGGAGGAGGGAGAGAGAGGGAGAGGAGTGCCGGTGTTTGTGATGATGCCGTTGGAGAGCGTGACGATGGAGAATAAGGTGAAGCGGAGGAAG
GCGATGGAGATGAGTTTTCAGGCGATGGAATGGGCGGGAGTTGAGGGAGTGATGGTGGACGTGTGGTGGGGATTGGTGGAGAAGGAGAGGCCTGGTGAGTATAACTTTGG
AGGTTATGAGGAGCTTTTGGCTATGGCCAGTTCGGCCTCAAAGTTCAGGCCGTCATGTCGTTCCATCAATGCGGAGGCAACGTCGGCGATTCCTGCACGTAACTACTTTC
TCCTTCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGACGAGTTCACTGCACCAGATCGGTACTCTGTTTGCGGCAACGACTGCGAAATGCAACGATCATCCACCTCAATCGAAAGCTCCGGCGAGTGCTGCGCTGGCGAG
GACGGTTCCTACGGCGGCGATTTTGCGATCTAGGGCTCCGAATCGAGAAAGAGAGAACGTAACCGTATCATCGTCGTCGGACGGATTCCGGCGGAGTTTGTCTGTGGCGT
GCAGAGGATCGGCAGCGGCGGAGGAGGGAGAGAGAGGGAGAGGAGTGCCGGTGTTTGTGATGATGCCGTTGGAGAGCGTGACGATGGAGAATAAGGTGAAGCGGAGGAAG
GCGATGGAGATGAGTTTTCAGGCGATGGAATGGGCGGGAGTTGAGGGAGTGATGGTGGACGTGTGGTGGGGATTGGTGGAGAAGGAGAGGCCTGGTGAGTATAACTTTGG
AGGTTATGAGGAGCTTTTGGCTATGGCCAGTTCGGCCTCAAAGTTCAGGCCGTCATGTCGTTCCATCAATGCGGAGGCAACGTCGGCGATTCCTGCACGTAACTACTTTC
TCCTTCCTTAA
Protein sequenceShow/hide protein sequence
MATSSLHQIGTLFAATTAKCNDHPPQSKAPASAALARTVPTAAILRSRAPNRERENVTVSSSSDGFRRSLSVACRGSAAAEEGERGRGVPVFVMMPLESVTMENKVKRRK
AMEMSFQAMEWAGVEGVMVDVWWGLVEKERPGEYNFGGYEELLAMASSASKFRPSCRSINAEATSAIPARNYFLLP