; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0016502 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0016502
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNA-binding (RRM/RBD/RNP motifs) family protein
Genome locationchr12:38427516..38428660
RNA-Seq ExpressionLag0016502
SyntenyLag0016502
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6574899.1 Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp. sororia]1.4e-5494.17Show/hide
Query:  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNSNATRN
        MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVF+DPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARA NSNATRN
Subjt:  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNSNATRN

Query:  S--GGGGGGGNMRTKKFLLG
        S  GGGGGGGNMRTKK  +G
Subjt:  S--GGGGGGGNMRTKKFLLG

KAG7013472.1 Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-5494.17Show/hide
Query:  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNSNATRN
        MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVF+DPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARA NSNATRN
Subjt:  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNSNATRN

Query:  S--GGGGGGGNMRTKKFLLG
        S  GGGGGGGNMRTKK  +G
Subjt:  S--GGGGGGGNMRTKKFLLG

XP_022959237.1 heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita moschata]4.4e-5695.76Show/hide
Query:  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNSNATRN
        MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVF+DPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARA NSNATRN
Subjt:  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNSNATRN

Query:  SGGGGGGGNMRTKKFLLG
        SGGGGGGGNMRTKK  +G
Subjt:  SGGGGGGGNMRTKKFLLG

XP_023006071.1 heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita maxima]3.1e-5494.92Show/hide
Query:  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNSNATRN
        MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVF+DPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARA NSNATRN
Subjt:  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNSNATRN

Query:  SGGGGGGGNMRTKKFLLG
        S GGGGGGNMRTKK  +G
Subjt:  SGGGGGGGNMRTKKFLLG

XP_023548146.1 heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita pepo subsp. pepo]4.1e-5491.13Show/hide
Query:  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNSNATRN
        MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVF+DPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARA NSNATRN
Subjt:  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNSNATRN

Query:  S------GGGGGGGNMRTKKFLLG
        S      GGGGGGGNMRTKK  +G
Subjt:  S------GGGGGGGNMRTKKFLLG

TrEMBL top hitse value%identityAlignment
A0A0A0LLG6 Uncharacterized protein2.7e-5192.37Show/hide
Query:  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNSNATRN
        MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVF+DPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARA NSN  RN
Subjt:  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNSNATRN

Query:  SGGGGGGGNMRTKKFLLG
        S GG GGGNMRTKK  +G
Subjt:  SGGGGGGGNMRTKKFLLG

A0A1S3CDG3 heterogeneous nuclear ribonucleoprotein 1-like2.7e-5192.37Show/hide
Query:  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNSNATRN
        MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVF+DPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARA NSN  RN
Subjt:  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNSNATRN

Query:  SGGGGGGGNMRTKKFLLG
        S GG GGGNMRTKK  +G
Subjt:  SGGGGGGGNMRTKKFLLG

A0A6J1CDB1 heterogeneous nuclear ribonucleoprotein 1-like4.4e-5490.68Show/hide
Query:  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNSNATRN
        MDSDQGKLFIGGISWETSEDKLKDYF NYG+V+HTVVMRDKITSRPRGFGFVVFADP++LDRVLQ+KHTIDGKTVEAKRALSREEQQTPARAGNSNATRN
Subjt:  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNSNATRN

Query:  SGGGGGGGNMRTKKFLLG
        SGGG GGG+MRTKK  +G
Subjt:  SGGGGGGGNMRTKKFLLG

A0A6J1H3Z2 heterogeneous nuclear ribonucleoprotein 1-like2.1e-5695.76Show/hide
Query:  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNSNATRN
        MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVF+DPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARA NSNATRN
Subjt:  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNSNATRN

Query:  SGGGGGGGNMRTKKFLLG
        SGGGGGGGNMRTKK  +G
Subjt:  SGGGGGGGNMRTKKFLLG

A0A6J1KWS0 heterogeneous nuclear ribonucleoprotein 1-like1.5e-5494.92Show/hide
Query:  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNSNATRN
        MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVF+DPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARA NSNATRN
Subjt:  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNSNATRN

Query:  SGGGGGGGNMRTKKFLLG
        S GGGGGGNMRTKK  +G
Subjt:  SGGGGGGGNMRTKKFLLG

SwissProt top hitse value%identityAlignment
O94432 Uncharacterized RNA-binding protein C660.155.6e-2248.86Show/hide
Query:  DQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPAR
        + GK+FIGG++WET++D L+DYF  +GEV+   VMRD  T R RGFGF+ F +P  ++ V+  +H +DGK ++ KRA+ REEQ+  A+
Subjt:  DQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPAR

Q8W034 Heterogeneous nuclear ribonucleoprotein 11.1e-3865.25Show/hide
Query:  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNSNATRN
        MDSDQGKLF+GGISWET EDKL+++F+NYGEV   +VMRDK+T RPRGFGFV+F+DPSVLDRVLQ+KH+ID + V+ KRA+SREEQQ   R GN N +R+
Subjt:  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNSNATRN

Query:  SGGGGGGGNMRTKKFLLG
        SGG       +TKK  +G
Subjt:  SGGGGGGGNMRTKKFLLG

Q920Q6 RNA-binding protein Musashi homolog 24.7e-2155.95Show/hide
Query:  DQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVL-QDKHTIDGKTVEAKRALSREEQ
        D GK+FIGG+SW+TS D L+DYFS +GE+   +VMRD  T R RGFGFV FADP+ +D+VL Q  H +D KT++ K A  R  Q
Subjt:  DQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVL-QDKHTIDGKTVEAKRALSREEQ

Q96DH6 RNA-binding protein Musashi homolog 24.7e-2155.95Show/hide
Query:  DQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVL-QDKHTIDGKTVEAKRALSREEQ
        D GK+FIGG+SW+TS D L+DYFS +GE+   +VMRD  T R RGFGFV FADP+ +D+VL Q  H +D KT++ K A  R  Q
Subjt:  DQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVL-QDKHTIDGKTVEAKRALSREEQ

Q9VVE5 RNA-binding protein Musashi homolog Rbp61.5e-1952.44Show/hide
Query:  SDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVL-QDKHTIDGKTVEAKRALSR
        +D GK+FIGG+SW+TS + L+DYF  YG++   +VM+D  T R RGFGFV F+DP+ +D+VL Q  H +DGK V+ K A  R
Subjt:  SDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVL-QDKHTIDGKTVEAKRALSR

Arabidopsis top hitse value%identityAlignment
AT2G33410.1 RNA-binding (RRM/RBD/RNP motifs) family protein6.3e-3761.86Show/hide
Query:  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNSNATRN
        M+SDQGKLFIGGISW+T E+ L++YFSN+GEV+   VMR+K T RPRGFGFV F+DP+V+DRVLQDKH ID + V+ KRA+SREEQ    R+G  NA+RN
Subjt:  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNSNATRN

Query:  SGGGGGGGNMRTKKFLLG
              G N+RTKK  +G
Subjt:  SGGGGGGGNMRTKKFLLG

AT4G14300.1 RNA-binding (RRM/RBD/RNP motifs) family protein8.0e-4065.25Show/hide
Query:  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNSNATRN
        MDSDQGKLF+GGISWET EDKL+++F+NYGEV   +VMRDK+T RPRGFGFV+F+DPSVLDRVLQ+KH+ID + V+ KRA+SREEQQ   R GN N +R+
Subjt:  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNSNATRN

Query:  SGGGGGGGNMRTKKFLLG
        SGG       +TKK  +G
Subjt:  SGGGGGGGNMRTKKFLLG

AT5G55550.1 RNA-binding (RRM/RBD/RNP motifs) family protein5.5e-3357.63Show/hide
Query:  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNSNATRN
        M+SD GKLFIGGISW+T E++L+DYFSNYG+V+  V+MRD+ T R RGFGF+VFADP V +RV+ DKH IDG+TVEAK+A+ R++QQ   R  +     +
Subjt:  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNSNATRN

Query:  SGGGGGGGNMRTKKFLLG
           GGGG   RTKK  +G
Subjt:  SGGGGGGGNMRTKKFLLG

AT5G55550.2 RNA-binding (RRM/RBD/RNP motifs) family protein5.5e-3357.63Show/hide
Query:  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNSNATRN
        M+SD GKLFIGGISW+T E++L+DYFSNYG+V+  V+MRD+ T R RGFGF+VFADP V +RV+ DKH IDG+TVEAK+A+ R++QQ   R  +     +
Subjt:  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNSNATRN

Query:  SGGGGGGGNMRTKKFLLG
           GGGG   RTKK  +G
Subjt:  SGGGGGGGNMRTKKFLLG

AT5G55550.3 RNA-binding (RRM/RBD/RNP motifs) family protein5.5e-3357.63Show/hide
Query:  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNSNATRN
        M+SD GKLFIGGISW+T E++L+DYFSNYG+V+  V+MRD+ T R RGFGF+VFADP V +RV+ DKH IDG+TVEAK+A+ R++QQ   R  +     +
Subjt:  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNSNATRN

Query:  SGGGGGGGNMRTKKFLLG
           GGGG   RTKK  +G
Subjt:  SGGGGGGGNMRTKKFLLG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACTCGGATCAGGGGAAGCTTTTTATTGGTGGGATTTCGTGGGAGACCTCGGAGGATAAGCTAAAGGACTACTTTAGCAACTATGGTGAAGTGATGCATACCGTTGT
TATGAGGGATAAGATCACTAGCAGACCTAGAGGGTTTGGCTTCGTCGTCTTTGCAGATCCCTCTGTCCTCGATCGAGTTCTCCAGGATAAGCACACTATCGATGGTAAAA
CGGTTGAGGCCAAGAGGGCCTTATCACGGGAGGAACAGCAGACCCCTGCCAGAGCAGGCAATTCTAATGCTACTAGAAATTCTGGTGGTGGTGGTGGTGGAGGAAATATG
AGAACCAAAAAATTTTTGTTGGGGGATTGCCTCCAACATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACTCGGATCAGGGGAAGCTTTTTATTGGTGGGATTTCGTGGGAGACCTCGGAGGATAAGCTAAAGGACTACTTTAGCAACTATGGTGAAGTGATGCATACCGTTGT
TATGAGGGATAAGATCACTAGCAGACCTAGAGGGTTTGGCTTCGTCGTCTTTGCAGATCCCTCTGTCCTCGATCGAGTTCTCCAGGATAAGCACACTATCGATGGTAAAA
CGGTTGAGGCCAAGAGGGCCTTATCACGGGAGGAACAGCAGACCCCTGCCAGAGCAGGCAATTCTAATGCTACTAGAAATTCTGGTGGTGGTGGTGGTGGAGGAAATATG
AGAACCAAAAAATTTTTGTTGGGGGATTGCCTCCAACATTGA
Protein sequenceShow/hide protein sequence
MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNSNATRNSGGGGGGGNM
RTKKFLLGDCLQH