CuGenDBv2

Gene ID	Lag0016506
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic
Genome location	chr12:38470301..38470858
RNA-Seq Expression	Lag0016506
Synteny	Lag0016506
Gene Ontology terms	GO:0010206 - photosystem II repair (biological process) GO:0010207 - photosystem II assembly (biological process) GO:0009523 - photosystem II (cellular component) GO:0009543 - chloroplast thylakoid lumen (cellular component)
InterPro domains	IPR025585 - Photosystem II Pbs27 IPR038450 - Photosystem II Pbs27 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_011659022.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic isoform X1 [Cucumis sativus]

8.5e-65

87.18

Show/hide

Query:  MSLVAFLAFNNGLTPMLARAEEMPNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQEDPKDPAKFRRTADAAKESIRDYLS
        MSLV FL FNNGLTP  A+AEEMPN N EEE+NGVI TIKSIFDPNEKTKSGK+LPKAYLKSA+EVVKTLRESLQEDPKD AKFRRTADAAKESIRDYLS
Subjt:  MSLVAFLAFNNGLTPMLARAEEMPNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQEDPKDPAKFRRTADAAKESIRDYLS

Query:  NWLGQQTVAQEESHVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLEKAEEFL
        NWLG+QTV QEES+VVLEKAIRSLAGFYAKAGPSAPLPE VKSDIL+DL+K EE L
Subjt:  NWLGQQTVAQEESHVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLEKAEEFL

XP_011659023.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic isoform X2 [Cucumis sativus]

8.5e-65

87.18

Show/hide

Query:  MSLVAFLAFNNGLTPMLARAEEMPNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQEDPKDPAKFRRTADAAKESIRDYLS
        MSLV FL FNNGLTP  A+AEEMPN N EEE+NGVI TIKSIFDPNEKTKSGK+LPKAYLKSA+EVVKTLRESLQEDPKD AKFRRTADAAKESIRDYLS
Subjt:  MSLVAFLAFNNGLTPMLARAEEMPNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQEDPKDPAKFRRTADAAKESIRDYLS

Query:  NWLGQQTVAQEESHVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLEKAEEFL
        NWLG+QTV QEES+VVLEKAIRSLAGFYAKAGPSAPLPE VKSDIL+DL+K EE L
Subjt:  NWLGQQTVAQEESHVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLEKAEEFL

XP_022958810.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita moschata]

1.6e-66

88.46

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Query:  MSLVAFLAFNNGLTPMLARAEEMPNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQEDPKDPAKFRRTADAAKESIRDYLS
        MS VAFL FNN LTP+LARAEEMPND  EEE NGVI TIKSIFDPNE+TKSGKVLPKAYLKSA+EVVKTLRESLQED KD AKFRRTADAAKESIRDYL 
Subjt:  MSLVAFLAFNNGLTPMLARAEEMPNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQEDPKDPAKFRRTADAAKESIRDYLS

Query:  NWLGQQTVAQEESHVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLEKAEEFL
        NWLGQQ V QEES+ VLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDL+KAEEFL
Subjt:  NWLGQQTVAQEESHVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLEKAEEFL

XP_023006140.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita maxima]

5.0e-65

87.82

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Query:  MSLVAFLAFNNGLTPMLARAEEMPNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQEDPKDPAKFRRTADAAKESIRDYLS
        MSLVAFL FNN LTP LARAEE PN + EEE NGVI TIKSIFDPNE+TKSGKVLPKAYLKSA+EVVKTLRESLQED KD AKFRRTADAAKESIRDYL 
Subjt:  MSLVAFLAFNNGLTPMLARAEEMPNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQEDPKDPAKFRRTADAAKESIRDYLS

Query:  NWLGQQTVAQEESHVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLEKAEEFL
        NWLGQQ V QEES+ VLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDL+KAEEFL
Subjt:  NWLGQQTVAQEESHVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLEKAEEFL

XP_023549108.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita pepo subsp. pepo]

1.1e-67

89.74

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Query:  MSLVAFLAFNNGLTPMLARAEEMPNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQEDPKDPAKFRRTADAAKESIRDYLS
        MSLVAFL FNN LTP+LARAEEMPNDN EEE NGVI TIKSIFDPNE+TKSGKVLPKAYLKSA+EVVKTLRESLQED KD AKFRRTADAAKESIRDYL 
Subjt:  MSLVAFLAFNNGLTPMLARAEEMPNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQEDPKDPAKFRRTADAAKESIRDYLS

Query:  NWLGQQTVAQEESHVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLEKAEEFL
        NWLGQQ V QEES+ VLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDL+KAEEFL
Subjt:  NWLGQQTVAQEESHVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLEKAEEFL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K400 Uncharacterized protein

4.1e-65

87.18

Show/hide

Query:  MSLVAFLAFNNGLTPMLARAEEMPNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQEDPKDPAKFRRTADAAKESIRDYLS
        MSLV FL FNNGLTP  A+AEEMPN N EEE+NGVI TIKSIFDPNEKTKSGK+LPKAYLKSA+EVVKTLRESLQEDPKD AKFRRTADAAKESIRDYLS
Subjt:  MSLVAFLAFNNGLTPMLARAEEMPNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQEDPKDPAKFRRTADAAKESIRDYLS

Query:  NWLGQQTVAQEESHVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLEKAEEFL
        NWLG+QTV QEES+VVLEKAIRSLAGFYAKAGPSAPLPE VKSDIL+DL+K EE L
Subjt:  NWLGQQTVAQEESHVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLEKAEEFL

A0A1S3BG68 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

3.5e-64

86.54

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Query:  MSLVAFLAFNNGLTPMLARAEEMPNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQEDPKDPAKFRRTADAAKESIRDYLS
        MSLV FL FNNGLTP  A AEEMPN N EEE+NGVI TIKSIFDPNE+TKSGKVLPKAYLKSA+EVVKTLRESLQEDPKD AKFRRTADAAKESIRDYLS
Subjt:  MSLVAFLAFNNGLTPMLARAEEMPNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQEDPKDPAKFRRTADAAKESIRDYLS

Query:  NWLGQQTVAQEESHVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLEKAEEFL
        NWLG+QT+ QEES+VVLEKAIRSLAGFYAKAGPSAPLPE VKSDIL+DL+KAE  L
Subjt:  NWLGQQTVAQEESHVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLEKAEEFL

A0A6J1CCV0 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

2.0e-64

85.26

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Query:  MSLVAFLAFNNGLTPMLARAEEMPNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQEDPKDPAKFRRTADAAKESIRDYLS
        MSLV FLAFNNG  P+LARAEE PND  +EE+NGV+  IKSIFDPNE+TKSGKVLPKAYLKSA+E+VKTLRES+QEDPKD AKFRRTADAAKESIRDYLS
Subjt:  MSLVAFLAFNNGLTPMLARAEEMPNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQEDPKDPAKFRRTADAAKESIRDYLS

Query:  NWLGQQTVAQEESHVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLEKAEEFL
        NWLGQQTVAQEES+  LEKAIRSLA FYAKAGPSAPLPE VKSDILNDL+KAEEFL
Subjt:  NWLGQQTVAQEESHVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLEKAEEFL

A0A6J1H448 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

7.5e-67

88.46

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Query:  MSLVAFLAFNNGLTPMLARAEEMPNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQEDPKDPAKFRRTADAAKESIRDYLS
        MS VAFL FNN LTP+LARAEEMPND  EEE NGVI TIKSIFDPNE+TKSGKVLPKAYLKSA+EVVKTLRESLQED KD AKFRRTADAAKESIRDYL 
Subjt:  MSLVAFLAFNNGLTPMLARAEEMPNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQEDPKDPAKFRRTADAAKESIRDYLS

Query:  NWLGQQTVAQEESHVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLEKAEEFL
        NWLGQQ V QEES+ VLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDL+KAEEFL
Subjt:  NWLGQQTVAQEESHVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLEKAEEFL

A0A6J1KWY8 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

2.4e-65

87.82

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Query:  MSLVAFLAFNNGLTPMLARAEEMPNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQEDPKDPAKFRRTADAAKESIRDYLS
        MSLVAFL FNN LTP LARAEE PN + EEE NGVI TIKSIFDPNE+TKSGKVLPKAYLKSA+EVVKTLRESLQED KD AKFRRTADAAKESIRDYL 
Subjt:  MSLVAFLAFNNGLTPMLARAEEMPNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQEDPKDPAKFRRTADAAKESIRDYLS

Query:  NWLGQQTVAQEESHVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLEKAEEFL
        NWLGQQ V QEES+ VLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDL+KAEEFL
Subjt:  NWLGQQTVAQEESHVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLEKAEEFL

SwissProt top hits

e value

%identity

Alignment

Q9LR64 Photosystem II repair protein PSB27-H1, chloroplastic

3.0e-04

28.43

Show/hide

Query:  YLKSAKEVVKTLRESLQEDPKDPAKFRRTADAAKESIRDYLSNWLG----QQTVAQEESHVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLEKAEE
        Y+K    V+  +R +L     DP      ADA  E +R+  ++W+     ++ +  + S   +  A+ +++G Y   GP+AP+P   K+ IL ++E AE+
Subjt:  YLKSAKEVVKTLRESLQEDPKDPAKFRRTADAAKESIRDYLSNWLG----QQTVAQEESHVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLEKAEE

Query:  FL
         L
Subjt:  FL

Q9ZVZ9 Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

1.3e-47

71.22

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Query:  ARAEEMPNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQEDPKDPAKFRRTADAAKESIRDYLSNWLGQQTVAQEESHVVL
        A+A E   D GE    GV+   K++FDPNE+TKSGK LPKAYLKSA+EVVKT+RESL+E+PKD AKFRR+ADAAKESIRDYLSNW GQ+TVA EES+V L
Subjt:  ARAEEMPNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQEDPKDPAKFRRTADAAKESIRDYLSNWLGQQTVAQEESHVVL

Query:  EKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLEKAEEFL
        E  IR+LA FY+KAGPSAPLP++VK++IL+DL KAEEFL
Subjt:  EKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLEKAEEFL

Arabidopsis top hits

e value

%identity

Alignment

AT1G03600.1 photosystem II family protein

2.1e-05

28.43

Show/hide

Query:  YLKSAKEVVKTLRESLQEDPKDPAKFRRTADAAKESIRDYLSNWLG----QQTVAQEESHVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLEKAEE
        Y+K    V+  +R +L     DP      ADA  E +R+  ++W+     ++ +  + S   +  A+ +++G Y   GP+AP+P   K+ IL ++E AE+
Subjt:  YLKSAKEVVKTLRESLQEDPKDPAKFRRTADAAKESIRDYLSNWLG----QQTVAQEESHVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLEKAEE

Query:  FL
         L
Subjt:  FL

AT1G05385.1 photosystem II 11 kDa protein-related

9.1e-49

71.22

Show/hide

Query:  ARAEEMPNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQEDPKDPAKFRRTADAAKESIRDYLSNWLGQQTVAQEESHVVL
        A+A E   D GE    GV+   K++FDPNE+TKSGK LPKAYLKSA+EVVKT+RESL+E+PKD AKFRR+ADAAKESIRDYLSNW GQ+TVA EES+V L
Subjt:  ARAEEMPNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQEDPKDPAKFRRTADAAKESIRDYLSNWLGQQTVAQEESHVVL

Query:  EKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLEKAEEFL
        E  IR+LA FY+KAGPSAPLP++VK++IL+DL KAEEFL
Subjt:  EKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLEKAEEFL

Sequences

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CDS sequence

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ATGTCATTGGTTGCGTTTCTTGCATTTAACAATGGATTGACCCCAATGTTGGCTCGAGCTGAAGAAATGCCGAACGACAACGGCGAGGAAGAGAATAATGGAGTTATCGA
GACGATCAAATCAATATTTGATCCAAATGAGAAAACCAAATCTGGGAAAGTATTGCCAAAGGCTTACCTGAAGTCTGCAAAAGAGGTGGTGAAGACGCTGCGTGAGTCAT
TACAGGAAGATCCCAAGGATCCTGCTAAATTTAGACGAACTGCAGATGCTGCAAAAGAGTCCATTCGAGACTATTTAAGCAATTGGTTGGGCCAACAAACAGTTGCTCAA
GAGGAATCTCACGTTGTGCTAGAGAAAGCAATAAGGTCATTAGCCGGCTTTTATGCAAAGGCTGGGCCATCTGCGCCATTGCCAGAAGATGTTAAATCTGATATACTGAA
TGATTTGGAGAAGGCTGAAGAATTCTTGTAA

mRNA sequence

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Protein sequence

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MSLVAFLAFNNGLTPMLARAEEMPNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQEDPKDPAKFRRTADAAKESIRDYLSNWLGQQTVAQ
EESHVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLEKAEEFL

Lag0016506 (gene) of Sponge gourd (AG-4) v1 genome