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Lag0016511 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0016511
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr12:38500080..38500382
RNA-Seq ExpressionLag0016511
SyntenyLag0016511
Gene Ontology termsGO:0110165 - cellular anatomical structure (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5469007.1 hypothetical protein F2P56_013112 [Juglans regia]9.1e-1240.43Show/hide
Query:  LRLRVRLNLKCPLWRSFKLQTSNEEEVWCPVIYERLPDFCYSCGRLGHARKECVHDVGEGVQMGQEQYGEWMRTGTVLGDVGRQGLNSNEKKEG
        +R+RV L++  PL R  KL+  +E   W  ++YERLPDFCY CG LGH+ +EC   +    ++ Q  YG W+R G      G Q       KEG
Subjt:  LRLRVRLNLKCPLWRSFKLQTSNEEEVWCPVIYERLPDFCYSCGRLGHARKECVHDVGEGVQMGQEQYGEWMRTGTVLGDVGRQGLNSNEKKEG

OMO52400.1 hypothetical protein COLO4_37225 [Corchorus olitorius]1.6e-1146.75Show/hide
Query:  LRLRVRLNLKCPLWRSFKLQTSNEEEVWCPVIYERLPDFCYSCGRLGHARKECVHDVGEGVQMGQEQYGEWMRTGTV
        LRLRV ++++ PL   F     N  +VW  + YE+L DFCY CG+LGH  K C  DV  G +  ++QYG WMRTG +
Subjt:  LRLRVRLNLKCPLWRSFKLQTSNEEEVWCPVIYERLPDFCYSCGRLGHARKECVHDVGEGVQMGQEQYGEWMRTGTV

OQU92454.1 hypothetical protein SORBI_3001G347001 [Sorghum bicolor]2.0e-1143.59Show/hide
Query:  VDPILRLRVRLNLKCPLWRSFKLQ-TSNEEEVWCPVIYERLPDFCYSCGRLGHARKECVHDVGEGVQMGQEQYGEWMR
        V   LR++V+++++ PL R   L+    E++ WCP+ YE LP+FCY CG LGH  KEC   V E  ++G +Q+G+W+R
Subjt:  VDPILRLRVRLNLKCPLWRSFKLQ-TSNEEEVWCPVIYERLPDFCYSCGRLGHARKECVHDVGEGVQMGQEQYGEWMR

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]3.0e-1543.59Show/hide
Query:  WVDPILRLRVRLNLKCPLWRSFKLQTSNEEEVWCPVIYERLPDFCYSCGRLGHARKECVHDVGEGVQMGQEQYGEWMR
        W  P +R+RV++++  PL R  KL+ S+ +++WCP+ YE+LPDFCY CG++GH+ +EC            EQYG+W+R
Subjt:  WVDPILRLRVRLNLKCPLWRSFKLQTSNEEEVWCPVIYERLPDFCYSCGRLGHARKECVHDVGEGVQMGQEQYGEWMR

XP_035546641.1 uncharacterized protein LOC108984200 [Juglans regia]9.1e-1240.43Show/hide
Query:  LRLRVRLNLKCPLWRSFKLQTSNEEEVWCPVIYERLPDFCYSCGRLGHARKECVHDVGEGVQMGQEQYGEWMRTGTVLGDVGRQGLNSNEKKEG
        +R+RV L++  PL R  KL+  +E   W  ++YERLPDFCY CG LGH+ +EC   +    ++ Q  YG W+R G      G Q       KEG
Subjt:  LRLRVRLNLKCPLWRSFKLQTSNEEEVWCPVIYERLPDFCYSCGRLGHARKECVHDVGEGVQMGQEQYGEWMRTGTVLGDVGRQGLNSNEKKEG

TrEMBL top hitse value%identityAlignment
A0A1R3G304 CCHC-type domain-containing protein7.5e-1246.75Show/hide
Query:  LRLRVRLNLKCPLWRSFKLQTSNEEEVWCPVIYERLPDFCYSCGRLGHARKECVHDVGEGVQMGQEQYGEWMRTGTV
        LRLRV ++++ PL   F     N  +VW  + YE+L DFCY CG+LGH  K C  DV  G +  ++QYG WMRTG +
Subjt:  LRLRVRLNLKCPLWRSFKLQTSNEEEVWCPVIYERLPDFCYSCGRLGHARKECVHDVGEGVQMGQEQYGEWMRTGTV

A0A1Z5S941 CCHC-type domain-containing protein9.9e-1243.59Show/hide
Query:  VDPILRLRVRLNLKCPLWRSFKLQ-TSNEEEVWCPVIYERLPDFCYSCGRLGHARKECVHDVGEGVQMGQEQYGEWMR
        V   LR++V+++++ PL R   L+    E++ WCP+ YE LP+FCY CG LGH  KEC   V E  ++G +Q+G+W+R
Subjt:  VDPILRLRVRLNLKCPLWRSFKLQ-TSNEEEVWCPVIYERLPDFCYSCGRLGHARKECVHDVGEGVQMGQEQYGEWMR

A0A6J1D765 uncharacterized protein LOC1110179021.5e-1543.59Show/hide
Query:  WVDPILRLRVRLNLKCPLWRSFKLQTSNEEEVWCPVIYERLPDFCYSCGRLGHARKECVHDVGEGVQMGQEQYGEWMR
        W  P +R+RV++++  PL R  KL+ S+ +++WCP+ YE+LPDFCY CG++GH+ +EC            EQYG+W+R
Subjt:  WVDPILRLRVRLNLKCPLWRSFKLQTSNEEEVWCPVIYERLPDFCYSCGRLGHARKECVHDVGEGVQMGQEQYGEWMR

A0A6J1DVS4 uncharacterized protein LOC1110235552.2e-1152.63Show/hide
Query:  WVDPILRLRVRLNLKCPLWRSFKLQTSNEEEVWCPVIYERLPDFCYSCGRLGHARKE
        WV P L +RV++N+  PL R  K++TS+ +++WCP+ YERLPDFCY CG +GH+ +E
Subjt:  WVDPILRLRVRLNLKCPLWRSFKLQTSNEEEVWCPVIYERLPDFCYSCGRLGHARKE

A0A6P9EH14 uncharacterized protein LOC1089842004.4e-1240.43Show/hide
Query:  LRLRVRLNLKCPLWRSFKLQTSNEEEVWCPVIYERLPDFCYSCGRLGHARKECVHDVGEGVQMGQEQYGEWMRTGTVLGDVGRQGLNSNEKKEG
        +R+RV L++  PL R  KL+  +E   W  ++YERLPDFCY CG LGH+ +EC   +    ++ Q  YG W+R G      G Q       KEG
Subjt:  LRLRVRLNLKCPLWRSFKLQTSNEEEVWCPVIYERLPDFCYSCGRLGHARKECVHDVGEGVQMGQEQYGEWMRTGTVLGDVGRQGLNSNEKKEG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGGTCGACCCAATACTGAGACTTCGTGTTCGTTTGAACTTGAAATGTCCTTTGTGGCGGAGCTTCAAACTCCAAACCAGTAATGAAGAGGAGGTTTGGTGCCCAGT
TATTTATGAAAGGCTGCCAGATTTTTGCTATAGTTGTGGGCGGCTTGGCCATGCAAGGAAGGAGTGTGTGCATGATGTGGGAGAGGGGGTGCAAATGGGTCAGGAGCAAT
ATGGCGAGTGGATGCGAACGGGGACGGTGTTGGGGGATGTGGGGAGACAGGGCCTGAATTCGAATGAGAAGAAGGAAGGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGGTCGACCCAATACTGAGACTTCGTGTTCGTTTGAACTTGAAATGTCCTTTGTGGCGGAGCTTCAAACTCCAAACCAGTAATGAAGAGGAGGTTTGGTGCCCAGT
TATTTATGAAAGGCTGCCAGATTTTTGCTATAGTTGTGGGCGGCTTGGCCATGCAAGGAAGGAGTGTGTGCATGATGTGGGAGAGGGGGTGCAAATGGGTCAGGAGCAAT
ATGGCGAGTGGATGCGAACGGGGACGGTGTTGGGGGATGTGGGGAGACAGGGCCTGAATTCGAATGAGAAGAAGGAAGGCTAG
Protein sequenceShow/hide protein sequence
MWVDPILRLRVRLNLKCPLWRSFKLQTSNEEEVWCPVIYERLPDFCYSCGRLGHARKECVHDVGEGVQMGQEQYGEWMRTGTVLGDVGRQGLNSNEKKEG