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Lag0016516 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0016516
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibulose bisphosphate carboxylase large chain
Genome locationchr12:38577848..38582355
RNA-Seq ExpressionLag0016516
SyntenyLag0016516
Gene Ontology termsGO:0009853 - photorespiration (biological process)
GO:0019253 - reductive pentose-phosphate cycle (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0000287 - magnesium ion binding (molecular function)
GO:0004497 - monooxygenase activity (molecular function)
GO:0016984 - ribulose-bisphosphate carboxylase activity (molecular function)
InterPro domainsIPR017443 - Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal
IPR033966 - RuBisCO
IPR036422 - RuBisCO large subunit, N-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AGF94942.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Monoon longifolium]5.3e-3269.64Show/hide
Query:  KNFQIWDGGGRRDLPPSFPAPETEEG-AAESSTGTWITVWTDGFTNLDRYKGRCCGIKPFAGEENQYIAYVAYPIDIF-ECFVTNMLTSIVGNVFGFKAL
        K+   W GGGR    P  PA E     AAESSTGTW TVWTDG T+ DRYKGRC  I+P AGEENQYI YVAYP+D+F E  VTNM TSIVGNVFGFKAL
Subjt:  KNFQIWDGGGRRDLPPSFPAPETEEG-AAESSTGTWITVWTDGFTNLDRYKGRCCGIKPFAGEENQYIAYVAYPIDIF-ECFVTNMLTSIVGNVFGFKAL

Query:  HAIRLEDLRIPT
         A+RLEDLRIPT
Subjt:  HAIRLEDLRIPT

KAG6593827.1 Splicing factor U2AF 65 kDa subunit, partial [Cucurbita argyrosperma subsp. sororia]1.4e-3286.6Show/hide
Query:  SRRSVKQTLCNSNDESAARTRPFSFEEIMLRRKNKESAANVEGGATGSHSRRESIDKHITDNRESERHFRHSRGSSLDVQNPSLEESAKISSRRKKK
        SR S KQ+L NSNDESAARTRPFSFE+IMLRRKNKESAAN +GG TGSHSRRESIDKHIT NRESERHFRHSRGSSLD+QN  LEESAKISSRRKK+
Subjt:  SRRSVKQTLCNSNDESAARTRPFSFEEIMLRRKNKESAANVEGGATGSHSRRESIDKHITDNRESERHFRHSRGSSLDVQNPSLEESAKISSRRKKK

KAG7026156.1 Splicing factor U2AF 65 kDa subunit [Cucurbita argyrosperma subsp. argyrosperma]1.4e-3286.6Show/hide
Query:  SRRSVKQTLCNSNDESAARTRPFSFEEIMLRRKNKESAANVEGGATGSHSRRESIDKHITDNRESERHFRHSRGSSLDVQNPSLEESAKISSRRKKK
        SR S KQ+L NSNDESAARTRPFSFE+IMLRRKNKESAAN +GG TGSHSRRESIDKHIT NRESERHFRHSRGSSLD+QN  LEESAKISSRRKK+
Subjt:  SRRSVKQTLCNSNDESAARTRPFSFEEIMLRRKNKESAANVEGGATGSHSRRESIDKHITDNRESERHFRHSRGSSLDVQNPSLEESAKISSRRKKK

QCD81442.1 ribulose-bisphosphate carboxylase large chain [Vigna unguiculata]1.4e-3276.77Show/hide
Query:  PSFPAPETEEGAA---ESSTGTWITVWTDGFTNLDRYKGRCCGIKPFAGEENQYIAYVAYPIDIF-ECFVTNMLTSIVGNVFGFKALHAIRLEDLRIPT
        P F  P  E GAA   ESSTGTW TVWTDG T+LDRYKGRC  I+P AGEENQYIAYVAYP+D+F E  VTNM TSIVGNVFGFKALHA+RLEDLRIPT
Subjt:  PSFPAPETEEGAA---ESSTGTWITVWTDGFTNLDRYKGRCCGIKPFAGEENQYIAYVAYPIDIF-ECFVTNMLTSIVGNVFGFKALHAIRLEDLRIPT

XP_023514084.1 splicing factor U2af large subunit A [Cucurbita pepo subsp. pepo]1.4e-3286.6Show/hide
Query:  SRRSVKQTLCNSNDESAARTRPFSFEEIMLRRKNKESAANVEGGATGSHSRRESIDKHITDNRESERHFRHSRGSSLDVQNPSLEESAKISSRRKKK
        SR S KQ+L NSNDESAARTRPFSFE+IMLRRKNKESAAN +GG TGSHSRRESIDKHIT NRESERHFRHSRGSSLDVQN  LEESA+ISSRRKK+
Subjt:  SRRSVKQTLCNSNDESAARTRPFSFEEIMLRRKNKESAANVEGGATGSHSRRESIDKHITDNRESERHFRHSRGSSLDVQNPSLEESAKISSRRKKK

TrEMBL top hitse value%identityAlignment
A0A0G2SNJ4 Ribulose bisphosphate carboxylase large chain (Fragment)2.6e-3277.32Show/hide
Query:  PSFPAPETEEG-AAESSTGTWITVWTDGFTNLDRYKGRCCGIKPFAGEENQYIAYVAYPIDIF-ECFVTNMLTSIVGNVFGFKALHAIRLEDLRIPT
        P  P  ET    AAESSTGTW TVWTDG T+LDRYKGRC GI+P AGEENQYIAYVAYP+D+F E  VTNM TSIVGNVFGFKAL A+RLEDLRIPT
Subjt:  PSFPAPETEEG-AAESSTGTWITVWTDGFTNLDRYKGRCCGIKPFAGEENQYIAYVAYPIDIF-ECFVTNMLTSIVGNVFGFKALHAIRLEDLRIPT

A0A2R2Z3E5 Ribulose bisphosphate carboxylase large chain (Fragment)3.3e-3278.12Show/hide
Query:  PSFPAPETEEG-AAESSTGTWITVWTDGFTNLDRYKGRCCGIKPFAGEENQYIAYVAYPIDIF-ECFVTNMLTSIVGNVFGFKALHAIRLEDLRIP
        P  PA E     AAESSTGTW TVWTDG T+LDRYKGRC  I+P AGEENQYIAYVAYP+D+F E FVTNMLTSIVGNVFGFKAL A+RLEDLRIP
Subjt:  PSFPAPETEEG-AAESSTGTWITVWTDGFTNLDRYKGRCCGIKPFAGEENQYIAYVAYPIDIF-ECFVTNMLTSIVGNVFGFKALHAIRLEDLRIP

A0A4D6KVJ5 Ribulose bisphosphate carboxylase large chain6.7e-3376.77Show/hide
Query:  PSFPAPETEEGAA---ESSTGTWITVWTDGFTNLDRYKGRCCGIKPFAGEENQYIAYVAYPIDIF-ECFVTNMLTSIVGNVFGFKALHAIRLEDLRIPT
        P F  P  E GAA   ESSTGTW TVWTDG T+LDRYKGRC  I+P AGEENQYIAYVAYP+D+F E  VTNM TSIVGNVFGFKALHA+RLEDLRIPT
Subjt:  PSFPAPETEEGAA---ESSTGTWITVWTDGFTNLDRYKGRCCGIKPFAGEENQYIAYVAYPIDIF-ECFVTNMLTSIVGNVFGFKALHAIRLEDLRIPT

A0A6J1HJZ8 splicing factor U2af large subunit A-like4.4e-3285.57Show/hide
Query:  SRRSVKQTLCNSNDESAARTRPFSFEEIMLRRKNKESAANVEGGATGSHSRRESIDKHITDNRESERHFRHSRGSSLDVQNPSLEESAKISSRRKKK
        SR S KQ+L NSNDESAARTRPFSFE+IMLRRKNKESAAN +GG TGSHSRRESIDKHIT N ESERHFRHSRGSSLD+QN  LEESAKISSRRKK+
Subjt:  SRRSVKQTLCNSNDESAARTRPFSFEEIMLRRKNKESAANVEGGATGSHSRRESIDKHITDNRESERHFRHSRGSSLDVQNPSLEESAKISSRRKKK

M1PY30 Ribulose bisphosphate carboxylase large chain (Fragment)2.6e-3269.64Show/hide
Query:  KNFQIWDGGGRRDLPPSFPAPETEEG-AAESSTGTWITVWTDGFTNLDRYKGRCCGIKPFAGEENQYIAYVAYPIDIF-ECFVTNMLTSIVGNVFGFKAL
        K+   W GGGR    P  PA E     AAESSTGTW TVWTDG T+ DRYKGRC  I+P AGEENQYI YVAYP+D+F E  VTNM TSIVGNVFGFKAL
Subjt:  KNFQIWDGGGRRDLPPSFPAPETEEG-AAESSTGTWITVWTDGFTNLDRYKGRCCGIKPFAGEENQYIAYVAYPIDIF-ECFVTNMLTSIVGNVFGFKAL

Query:  HAIRLEDLRIPT
         A+RLEDLRIPT
Subjt:  HAIRLEDLRIPT

SwissProt top hitse value%identityAlignment
O62943 Ribulose bisphosphate carboxylase large chain2.0e-3475.76Show/hide
Query:  PSFPAPETEEG---AAESSTGTWITVWTDGFTNLDRYKGRCCGIKPFAGEENQYIAYVAYPIDIF-ECFVTNMLTSIVGNVFGFKALHAIRLEDLRIPT
        P    P  E G   AAESSTGTW TVWTDG T+LDRYKGRC GI+P AGEENQYIAYVAYP+D+F E  VTNM TSIVGNVFGFKAL A+RLEDLRIPT
Subjt:  PSFPAPETEEG---AAESSTGTWITVWTDGFTNLDRYKGRCCGIKPFAGEENQYIAYVAYPIDIF-ECFVTNMLTSIVGNVFGFKALHAIRLEDLRIPT

P27064 Ribulose bisphosphate carboxylase large chain2.0e-3475.76Show/hide
Query:  PSFPAPETEEG---AAESSTGTWITVWTDGFTNLDRYKGRCCGIKPFAGEENQYIAYVAYPIDIF-ECFVTNMLTSIVGNVFGFKALHAIRLEDLRIPT
        P    P  E G   AAESSTGTW TVWTDG T+LDRYKGRC GI+P AGEENQYIAYVAYP+D+F E  VTNM TSIVGNVFGFKAL A+RLEDLRIPT
Subjt:  PSFPAPETEEG---AAESSTGTWITVWTDGFTNLDRYKGRCCGIKPFAGEENQYIAYVAYPIDIF-ECFVTNMLTSIVGNVFGFKALHAIRLEDLRIPT

P27066 Ribulose bisphosphate carboxylase large chain3.4e-3474.75Show/hide
Query:  PSFPAPETEEG---AAESSTGTWITVWTDGFTNLDRYKGRCCGIKPFAGEENQYIAYVAYPIDIF-ECFVTNMLTSIVGNVFGFKALHAIRLEDLRIPT
        P    P  E G   AAESSTGTW TVWTDG T+LDRYKGRC G++P AGEENQYIAYVAYP+D+F E  VTNM TSIVGNVFGFKAL A+RLEDLRIPT
Subjt:  PSFPAPETEEG---AAESSTGTWITVWTDGFTNLDRYKGRCCGIKPFAGEENQYIAYVAYPIDIF-ECFVTNMLTSIVGNVFGFKALHAIRLEDLRIPT

P36476 Ribulose bisphosphate carboxylase large chain7.7e-3477.08Show/hide
Query:  PSFPAPETEEG-AAESSTGTWITVWTDGFTNLDRYKGRCCGIKPFAGEENQYIAYVAYPIDIF-ECFVTNMLTSIVGNVFGFKALHAIRLEDLRIP
        P  PA E     AAESSTGTW TVWTDG T+LDRYKGRC  I+P AGEENQYIAYVAYP+D+F E  VTNMLTSIVGNVFGFKAL A+RLEDLRIP
Subjt:  PSFPAPETEEG-AAESSTGTWITVWTDGFTNLDRYKGRCCGIKPFAGEENQYIAYVAYPIDIF-ECFVTNMLTSIVGNVFGFKALHAIRLEDLRIP

P48714 Ribulose bisphosphate carboxylase large chain5.9e-3474Show/hide
Query:  LPPSFPAPETEEG---AAESSTGTWITVWTDGFTNLDRYKGRCCGIKPFAGEENQYIAYVAYPIDIF-ECFVTNMLTSIVGNVFGFKALHAIRLEDLRIP
        + P    P  E G   AAESSTGTW TVWTDG T+LDRYKGRC GI+P AGEENQYIAYVAYP+D+F E  VTNM TSIVGNVFGFKAL A+RLEDLRIP
Subjt:  LPPSFPAPETEEG---AAESSTGTWITVWTDGFTNLDRYKGRCCGIKPFAGEENQYIAYVAYPIDIF-ECFVTNMLTSIVGNVFGFKALHAIRLEDLRIP

Arabidopsis top hitse value%identityAlignment
ATCG00490.1 ribulose-bisphosphate carboxylases5.6e-3271.43Show/hide
Query:  PSFPAPETEEG---AAESSTGTWITVWTDGFTNLDRYKGRCCGIKPFAGEENQYIAYVAYPIDIF-ECFVTNMLTSIVGNVFGFKALHAIRLEDLRIP
        P    P  E G   AAESSTGTW TVWTDG T+LDRYKGRC  I+P  GEE Q+IAYVAYP+D+F E  VTNM TSIVGNVFGFKAL A+RLEDLRIP
Subjt:  PSFPAPETEEG---AAESSTGTWITVWTDGFTNLDRYKGRCCGIKPFAGEENQYIAYVAYPIDIF-ECFVTNMLTSIVGNVFGFKALHAIRLEDLRIP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTGTCCGCTTTACCATGATAGAGGATGTGATGTTAGCGGTTCCACAAGTTTGCACACGGGCATTGGCTTGGCAGTTATGCAAGGTGTGTGGTGGAAGTTATGTCG
ATGGCTGAAGAACTTCCAGATCTGGGACGGGGGAGGGAGGAGGGACCTCCCTCCTTCGTTTCCGGCGCCGGAGACGGAGGAGGGAGCTGCTGAATCTTCTACTGGTACAT
GGATAACTGTGTGGACCGATGGGTTTACCAATCTTGATCGTTACAAAGGACGATGTTGTGGCATCAAACCTTTTGCTGGAGAAGAAAATCAGTATATTGCTTATGTAGCT
TATCCCATAGACATTTTTGAATGTTTTGTTACTAACATGCTTACTTCCATTGTAGGTAATGTATTTGGATTCAAGGCTCTGCACGCTATACGTTTGGAGGATTTGCGAAT
CCCTACTGATTTAAAACTTTCCAAGGCCCACCTCACGATATCCAGACAAAAAAACCCTCAATTTTTCTTCTTCCCCACACCAAATCCAAACCCTCAAATTTTAGGTTTTT
TCTCCTCCATCGCTCTTCCATCTCCTCTCTTCCTCCTCACTCACTGCAACTTCCCCATCGCCGCTGCGCCTCGCTTTCCTCCTCTCATTTCCGCCTTCTATCCAAGGATT
TTTGAATGTGCAGGTGACTGCGTAGCACTGAGTAGAAGGAGTGTTAAGCAGACCCTGTGCAACTCTAATGATGAAAGTGCAGCTCGGACTAGGCCATTCAGCTTTGAAGA
GATTATGCTTAGAAGGAAGAATAAAGAGTCAGCTGCTAATGTTGAAGGGGGTGCCACAGGTAGCCATTCAAGAAGGGAAAGCATAGATAAGCACATTACTGATAATCGTG
AATCTGAAAGGCATTTTCGTCACAGTAGAGGTTCTTCTCTTGATGTGCAAAATCCGTCATTGGAGGAATCAGCCAAGATTAGTTCAAGAAGGAAAAAGAAGAGACATTGT
TGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGTGTCCGCTTTACCATGATAGAGGATGTGATGTTAGCGGTTCCACAAGTTTGCACACGGGCATTGGCTTGGCAGTTATGCAAGGTGTGTGGTGGAAGTTATGTCG
ATGGCTGAAGAACTTCCAGATCTGGGACGGGGGAGGGAGGAGGGACCTCCCTCCTTCGTTTCCGGCGCCGGAGACGGAGGAGGGAGCTGCTGAATCTTCTACTGGTACAT
GGATAACTGTGTGGACCGATGGGTTTACCAATCTTGATCGTTACAAAGGACGATGTTGTGGCATCAAACCTTTTGCTGGAGAAGAAAATCAGTATATTGCTTATGTAGCT
TATCCCATAGACATTTTTGAATGTTTTGTTACTAACATGCTTACTTCCATTGTAGGTAATGTATTTGGATTCAAGGCTCTGCACGCTATACGTTTGGAGGATTTGCGAAT
CCCTACTGATTTAAAACTTTCCAAGGCCCACCTCACGATATCCAGACAAAAAAACCCTCAATTTTTCTTCTTCCCCACACCAAATCCAAACCCTCAAATTTTAGGTTTTT
TCTCCTCCATCGCTCTTCCATCTCCTCTCTTCCTCCTCACTCACTGCAACTTCCCCATCGCCGCTGCGCCTCGCTTTCCTCCTCTCATTTCCGCCTTCTATCCAAGGATT
TTTGAATGTGCAGGTGACTGCGTAGCACTGAGTAGAAGGAGTGTTAAGCAGACCCTGTGCAACTCTAATGATGAAAGTGCAGCTCGGACTAGGCCATTCAGCTTTGAAGA
GATTATGCTTAGAAGGAAGAATAAAGAGTCAGCTGCTAATGTTGAAGGGGGTGCCACAGGTAGCCATTCAAGAAGGGAAAGCATAGATAAGCACATTACTGATAATCGTG
AATCTGAAAGGCATTTTCGTCACAGTAGAGGTTCTTCTCTTGATGTGCAAAATCCGTCATTGGAGGAATCAGCCAAGATTAGTTCAAGAAGGAAAAAGAAGAGACATTGT
TGA
Protein sequenceShow/hide protein sequence
MVCPLYHDRGCDVSGSTSLHTGIGLAVMQGVWWKLCRWLKNFQIWDGGGRRDLPPSFPAPETEEGAAESSTGTWITVWTDGFTNLDRYKGRCCGIKPFAGEENQYIAYVA
YPIDIFECFVTNMLTSIVGNVFGFKALHAIRLEDLRIPTDLKLSKAHLTISRQKNPQFFFFPTPNPNPQILGFFSSIALPSPLFLLTHCNFPIAAAPRFPPLISAFYPRI
FECAGDCVALSRRSVKQTLCNSNDESAARTRPFSFEEIMLRRKNKESAANVEGGATGSHSRRESIDKHITDNRESERHFRHSRGSSLDVQNPSLEESAKISSRRKKKRHC