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Lag0016618 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0016618
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr12:39588689..39589186
RNA-Seq ExpressionLag0016618
SyntenyLag0016618
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_023887146.1 uncharacterized protein LOC111999255 [Quercus suber]5.7e-1939.07Show/hide
Query:  LKLNTDVAIDKINQQSSMGAIVRNWKGEVMLTAMKRIPFAPDVDLLEALAVREGLSWAKEAGFTNLVVESDSARVVALLRSETINISEVGALVKEIQLIS
        +K+N D A       + +GAI+RN  G VM      IP    V+++E LA R  L +AKE GF N++VE DS  V+  L +   + S +G +VK++++++
Subjt:  LKLNTDVAIDKINQQSSMGAIVRNWKGEVMLTAMKRIPFAPDVDLLEALAVREGLSWAKEAGFTNLVVESDSARVVALLRSETINISEVGALVKEIQLIS

Query:  KELHLCLFRWCRRAANAVAHKLARVAMEKKSEGVWLEEVPRGIEGVYFSEI
          L    F   RR  N VAH LAR+A        W+E+VP  +EGVY SEI
Subjt:  KELHLCLFRWCRRAANAVAHKLARVAMEKKSEGVWLEEVPRGIEGVYFSEI

XP_023915286.1 uncharacterized protein LOC112026812 [Quercus suber]1.8e-1741.73Show/hide
Query:  KLNTDVAIDKINQQSSMGAIVRNWKGEVMLTAMKRIPFAPDVDLLEALAVREGLSWAKEAGFTNLVVESDSARVVALLRSETINISEVGALVKEIQLISK
        KLN DVA+      S +G I+RN  G+VM     R P   D D  E LA R GL +A EAGF +L+VE D+  V+  + S   + S +G LV +++ ++ 
Subjt:  KLNTDVAIDKINQQSSMGAIVRNWKGEVMLTAMKRIPFAPDVDLLEALAVREGLSWAKEAGFTNLVVESDSARVVALLRSETINISEVGALVKEIQLISK

Query:  ELHLCLFRWCRRAANAVAHKLARVAMEKKSEGVWLEEVP
         L L  F+  RR+AN VAH LAR A     + VWLE+ P
Subjt:  ELHLCLFRWCRRAANAVAHKLARVAMEKKSEGVWLEEVP

XP_030934661.1 uncharacterized protein LOC115960098 [Quercus lobata]1.1e-1737.75Show/hide
Query:  LKLNTDVAIDKINQQSSMGAIVRNWKGEVMLTAMKRIPFAPDVDLLEALAVREGLSWAKEAGFTNLVVESDSARVVALLRSETINISEVGALVKEIQLIS
        +K+N D A    +  + +GAI+RN  G VM    + IP    V+++E LA R  L +AK+ GF  +VVE DS  ++  L S  ++ S  G ++++I+ +S
Subjt:  LKLNTDVAIDKINQQSSMGAIVRNWKGEVMLTAMKRIPFAPDVDLLEALAVREGLSWAKEAGFTNLVVESDSARVVALLRSETINISEVGALVKEIQLIS

Query:  KELHLCLFRWCRRAANAVAHKLARVAMEKKSEGVWLEEVPRGIEGVYFSEI
          L   LF   RR  N VAH LAR+A    +   W+E+VP G+  VY SE+
Subjt:  KELHLCLFRWCRRAANAVAHKLARVAMEKKSEGVWLEEVPRGIEGVYFSEI

XP_030936152.1 uncharacterized protein LOC115961289 [Quercus lobata]1.4e-1738.56Show/hide
Query:  MLKLNTDVAIDKINQQSSMGAIVRNWKGEVMLTAMKRIPFAPDVDLLEALAVREGLSWAKEAGFTNLVVESDSARVVALLRSETINISEVGALVKEIQLI
        + KLN D AI      S +G I+RN KGEVM     + P     +  E LA R  L +A +AGFTNL+VE D+A V++ L S   ++S +G ++++IQ +
Subjt:  MLKLNTDVAIDKINQQSSMGAIVRNWKGEVMLTAMKRIPFAPDVDLLEALAVREGLSWAKEAGFTNLVVESDSARVVALLRSETINISEVGALVKEIQLI

Query:  SKELHLCLFRWCRRAANAVAHKLARVAMEKKSEGVWLEEV-PRGIEGVYFSEI
        +  +    F   +R AN VAH LAR A +   + VWLE+  P  IE +Y+  +
Subjt:  SKELHLCLFRWCRRAANAVAHKLARVAMEKKSEGVWLEEV-PRGIEGVYFSEI

XP_030946034.1 uncharacterized protein LOC115970558 [Quercus lobata]3.7e-1842.48Show/hide
Query:  MLKLNTDVAIDKINQQSSMGAIVRNWKGEVMLTAMKRIPFAPDVDLLEALAVREGLSWAKEAGFTNLVVESDSARVVALLRSETINISEVGALVKEIQLI
        M K+N D A+      S +G +VRN KGEVM +   R P   D D  E LA R  L +A EAGF+ L++E D+  V+  L S   N S +G +V+EIQ I
Subjt:  MLKLNTDVAIDKINQQSSMGAIVRNWKGEVMLTAMKRIPFAPDVDLLEALAVREGLSWAKEAGFTNLVVESDSARVVALLRSETINISEVGALVKEIQLI

Query:  SKELHLCLFRWCRRAANAVAHKLARVAMEKKSEGVWLEEVPR-GIEGVYFSEI
        S  LH     + +R AN VAH LA+ A     E VWLEE P+  +E +YF  +
Subjt:  SKELHLCLFRWCRRAANAVAHKLARVAMEKKSEGVWLEEVPR-GIEGVYFSEI

TrEMBL top hitse value%identityAlignment
A0A1R3JXX0 RNase H domain-containing protein6.4e-1630.52Show/hide
Query:  KLNTDVAIDKINQQSSMGAIVRNWKGEVMLTAMKRIPFAPDVDLLEALAVREGLSWAKEAGFTNLVVESDSARVVALLRSETINISEVGALVKEIQLISK
        K+N D +    +++ S GAI R+++G V+     R+    D    E LA  + ++WAK+ GF N+V+E D+  ++  + +   + S +G  + EI+++S 
Subjt:  KLNTDVAIDKINQQSSMGAIVRNWKGEVMLTAMKRIPFAPDVDLLEALAVREGLSWAKEAGFTNLVVESDSARVVALLRSETINISEVGALVKEIQLISK

Query:  ELHLCLFRWCRRAANAVAHKLARVAMEKKSEGVWLEEVPRGIEGVYFSEISDKP
            CLF    R  N +AH LA +        +W+EEVP  I  V  +E +  P
Subjt:  ELHLCLFRWCRRAANAVAHKLARVAMEKKSEGVWLEEVPRGIEGVYFSEISDKP

A0A2N9G5T2 Uncharacterized protein1.1e-1534.9Show/hide
Query:  KLNTDVAIDKINQQSSMGAIVRNWKGEVMLTAMKRIPFAPDVDLLEALAVREGLSWAKEAGFTNLVVESDSARVVALLRSETINISEVGALVKEIQLISK
        K N D AI K   ++ +G IVRN  G+VM + ++++ +   V+ +EA A R  +S+ KE G      E DS  VVA L S   + +  G L+K+ ++++ 
Subjt:  KLNTDVAIDKINQQSSMGAIVRNWKGEVMLTAMKRIPFAPDVDLLEALAVREGLSWAKEAGFTNLVVESDSARVVALLRSETINISEVGALVKEIQLISK

Query:  ELHLCLFRWCRRAANAVAHKLARVAMEKKSEGVWLEEVPRGIEGVYFSE
         L    F   +R  NA+AH LAR+A+  ++  VW+E+VP   + +Y S+
Subjt:  ELHLCLFRWCRRAANAVAHKLARVAMEKKSEGVWLEEVPRGIEGVYFSE

A0A2N9HRK6 Uncharacterized protein9.8e-1735.57Show/hide
Query:  KLNTDVAIDKINQQSSMGAIVRNWKGEVMLTAMKRIPFAPDVDLLEALAVREGLSWAKEAGFTNLVVESDSARVVALLRSETINISEVGALVKEIQLISK
        K N D AI K   ++ +G IVRN +G+VM + ++++ +   V+ +EA A R  +S+  E G +    E DS  VVA L S   N++  G L+++++L++ 
Subjt:  KLNTDVAIDKINQQSSMGAIVRNWKGEVMLTAMKRIPFAPDVDLLEALAVREGLSWAKEAGFTNLVVESDSARVVALLRSETINISEVGALVKEIQLISK

Query:  ELHLCLFRWCRRAANAVAHKLARVAMEKKSEGVWLEEVPRGIEGVYFSE
         L    F   +R  NA+AH LAR+A+   +  VW+E+VP   + +Y SE
Subjt:  ELHLCLFRWCRRAANAVAHKLARVAMEKKSEGVWLEEVPRGIEGVYFSE

A0A5C7GQX3 RNase H domain-containing protein4.9e-1636.18Show/hide
Query:  MLKLNTDVAIDKINQQSSMGAIVRNWKGEVMLTAMKRIPFAPDVDLLEALAVREGLSWAKEAGFTNLVVESDSARVVA-LLRSETINISEVGALVKEIQL
        M K+NTD A++     + +G ++RN++G+VML++ K    A    + EALAV EGL  AK  GF   V+ESD+  VV  + R+E+++ S+VG ++ +I  
Subjt:  MLKLNTDVAIDKINQQSSMGAIVRNWKGEVMLTAMKRIPFAPDVDLLEALAVREGLSWAKEAGFTNLVVESDSARVVA-LLRSETINISEVGALVKEIQL

Query:  ISKELHLCLFRWCRRAANAVAHKLARVAMEKKSEGVWLEEVPRGIEGVYFSE
          ++ +   FR   R AN VAH LA++A+    E VW  + P  +E +   +
Subjt:  ISKELHLCLFRWCRRAANAVAHKLARVAMEKKSEGVWLEEVPRGIEGVYFSE

A0A6J1DBJ7 uncharacterized protein LOC1110189738.3e-1638.51Show/hide
Query:  MLKLNTDVAIDKINQQSSMGAIVRNWKGEVMLTAMKRIPFAPDVDLLEALAVREGLSWAKEAGFTNLVVESDSARVVALLRSETINISEVGALVKEIQL-
        +LK+N D A  K +  + +G I+R+  G V LTA++ +  A DVD +E  AV EG+  A EAGF    +E+DS R+  LL ++ ++ SEVG L   I+L 
Subjt:  MLKLNTDVAIDKINQQSSMGAIVRNWKGEVMLTAMKRIPFAPDVDLLEALAVREGLSWAKEAGFTNLVVESDSARVVALLRSETINISEVGALVKEIQL-

Query:  ISKELHLCLFRWCRRAANAVAHKLARVAMEKKSEGVWLEEVPRGIEGV
        +S       F +  R  NA AH LA++A+      +W+EE P  I  V
Subjt:  ISKELHLCLFRWCRRAANAVAHKLARVAMEKKSEGVWLEEVPRGIEGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein8.5e-0524.41Show/hide
Query:  LKLNTDVAIDKINQQSSMGAIVRNWKGEVMLTAMKRIPFAPDVDLLEALAVREGLSWAKEAGFTNLVVESDSARVVALLRSETINISEVGALVKEIQLIS
        +K NTD   ++ N++  +G ++RN KGEV     + +P    V   E  A+R  +       +  ++ ESDS  ++ +L ++ I  S +   ++++Q + 
Subjt:  LKLNTDVAIDKINQQSSMGAIVRNWKGEVMLTAMKRIPFAPDVDLLEALAVREGLSWAKEAGFTNLVVESDSARVVALLRSETINISEVGALVKEIQLIS

Query:  KELHLCLFRWCRRAANAVAHKLARVAM
         +     F +  R  N +A ++AR ++
Subjt:  KELHLCLFRWCRRAANAVAHKLARVAM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAAAGCTTAACACAGATGTTGCAATTGATAAAATAAATCAGCAGAGCAGCATGGGAGCTATTGTCCGAAATTGGAAAGGAGAAGTGATGCTTACCGCAATGAAGAG
GATCCCGTTTGCACCCGATGTAGATTTGCTAGAGGCCTTGGCGGTTCGGGAAGGATTGAGTTGGGCAAAAGAGGCGGGGTTCACAAATCTGGTGGTTGAATCGGATTCCG
CCCGAGTGGTTGCTTTGTTGAGATCTGAGACGATTAATATCTCAGAAGTCGGGGCGTTGGTGAAGGAAATTCAGCTCATAAGCAAGGAGCTGCACCTCTGTTTGTTCCGG
TGGTGTAGAAGGGCAGCGAATGCAGTGGCCCATAAGCTGGCGAGAGTGGCGATGGAGAAGAAGAGTGAAGGTGTCTGGTTAGAAGAAGTTCCAAGGGGTATCGAAGGAGT
TTATTTTTCTGAAATCTCAGACAAGCCCTCTAGCTTGTTGGAGGGTTTTGTGTCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTAAAGCTTAACACAGATGTTGCAATTGATAAAATAAATCAGCAGAGCAGCATGGGAGCTATTGTCCGAAATTGGAAAGGAGAAGTGATGCTTACCGCAATGAAGAG
GATCCCGTTTGCACCCGATGTAGATTTGCTAGAGGCCTTGGCGGTTCGGGAAGGATTGAGTTGGGCAAAAGAGGCGGGGTTCACAAATCTGGTGGTTGAATCGGATTCCG
CCCGAGTGGTTGCTTTGTTGAGATCTGAGACGATTAATATCTCAGAAGTCGGGGCGTTGGTGAAGGAAATTCAGCTCATAAGCAAGGAGCTGCACCTCTGTTTGTTCCGG
TGGTGTAGAAGGGCAGCGAATGCAGTGGCCCATAAGCTGGCGAGAGTGGCGATGGAGAAGAAGAGTGAAGGTGTCTGGTTAGAAGAAGTTCCAAGGGGTATCGAAGGAGT
TTATTTTTCTGAAATCTCAGACAAGCCCTCTAGCTTGTTGGAGGGTTTTGTGTCCTGA
Protein sequenceShow/hide protein sequence
MLKLNTDVAIDKINQQSSMGAIVRNWKGEVMLTAMKRIPFAPDVDLLEALAVREGLSWAKEAGFTNLVVESDSARVVALLRSETINISEVGALVKEIQLISKELHLCLFR
WCRRAANAVAHKLARVAMEKKSEGVWLEEVPRGIEGVYFSEISDKPSSLLEGFVS