CuGenDBv2

Gene ID	Lag0016681
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	zf-RVT domain-containing protein
Genome location	chr12:40247748..40248825
RNA-Seq Expression	Lag0016681
Synteny	Lag0016681
Gene Ontology terms	NA
InterPro domains	IPR026960 - Reverse transcriptase zinc-binding domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAF4355666.1 hypothetical protein F8388_013083 [Cannabis sativa]

7.3e-17

29.25

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Query:  QGLPISGS-ALDTW--------VPNKVKHFVWKSFNNSIPTMVNLWDHHVSVNGTCPVCQEEMETIAHAIFWCERTREIWNILAPGEFEWSH-----LNI
        + LP S S    TW        +P K+ HF W+ F+  +PT + L    +  N +C +C    E+ AHAIFWC   REIW +L   EF + H     ++ 
Subjt:  QGLPISGS-ALDTW--------VPNKVKHFVWKSFNNSIPTMVNLWDHHVSVNGTCPVCQEEMETIAHAIFWCERTREIWNILAPGEFEWSH-----LNI

Query:  QDLWLNLVERKGID-FDLLCVGAWAIWNDRNNLIHNRQAPNLSVRCDWIKEYVSDFRKANPGG------ISSNQSLDDVRRLIMQGEE--MIMHSDATFR
        +++ L   E    D F+ + + AWAIW +RN + H +         +WI  Y      A  G       I  N++  +V     Q E+   I+  DA   
Subjt:  QDLWLNLVERKGID-FDLLCVGAWAIWNDRNNLIHNRQAPNLSVRCDWIKEYVSDFRKANPGG------ISSNQSLDDVRRLIMQGEE--MIMHSDATFR

Query:  NDMVSMGISIVL
        N+  S+G+  ++
Subjt:  NDMVSMGISIVL

KAF4365346.1 hypothetical protein G4B88_017342 [Cannabis sativa]

2.1e-16

28.77

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Query:  QGLPISGS-ALDTW--------VPNKVKHFVWKSFNNSIPTMVNLWDHHVSVNGTCPVCQEEMETIAHAIFWCERTREIWNILAPGEFEWSH-----LNI
        + LP S S    TW        +P K+ HF W+ F+  +PT + L    +  N +C +C    E+ AHAIFWC   +EIW +L   EF + H     ++ 
Subjt:  QGLPISGS-ALDTW--------VPNKVKHFVWKSFNNSIPTMVNLWDHHVSVNGTCPVCQEEMETIAHAIFWCERTREIWNILAPGEFEWSH-----LNI

Query:  QDLWLNLVERKGID-FDLLCVGAWAIWNDRNNLIHNRQAPNLSVRCDWIKEYVSDFRKANPGG------ISSNQSLDDVRRLIMQGEE--MIMHSDATFR
        +++ L   E    D F+ + + AWAIW +RN + H +         +WI  Y      A  G       I  N++  +V     Q E+   I+  DA   
Subjt:  QDLWLNLVERKGID-FDLLCVGAWAIWNDRNNLIHNRQAPNLSVRCDWIKEYVSDFRKANPGG------ISSNQSLDDVRRLIMQGEE--MIMHSDATFR

Query:  NDMVSMGISIVL
        N+  S+G+  ++
Subjt:  NDMVSMGISIVL

KAF4386305.1 hypothetical protein G4B88_003522 [Cannabis sativa]

9.5e-17

29.72

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Query:  QGLPISGS-ALDTW--------VPNKVKHFVWKSFNNSIPTMVNLWDHHVSVNGTCPVCQEEMETIAHAIFWCERTREIWNILAPGEFEWSH-----LNI
        + LP S S    TW        +P K+ HFVW+ F+  +PT + L    +  N +C +C    E+ AHAIFWC   +EIW +L   EF + H     ++ 
Subjt:  QGLPISGS-ALDTW--------VPNKVKHFVWKSFNNSIPTMVNLWDHHVSVNGTCPVCQEEMETIAHAIFWCERTREIWNILAPGEFEWSH-----LNI

Query:  QDLWLNLVERKGID-FDLLCVGAWAIWNDRNNLIHNRQAPNLSVRCDWIKEYVSDFRKANPGG-ISS-----NQSLDDVRRLIMQGEE--MIMHSDATFR
        +++ L   E    D F+ + + AWAIW +RN + H +         +WI  Y      A  G  +SS     N++  +V     Q E+   I+  DA   
Subjt:  QDLWLNLVERKGID-FDLLCVGAWAIWNDRNNLIHNRQAPNLSVRCDWIKEYVSDFRKANPGG-ISS-----NQSLDDVRRLIMQGEE--MIMHSDATFR

Query:  NDMVSMGISIVL
        N+  S+G+  ++
Subjt:  NDMVSMGISIVL

XP_022145060.1 uncharacterized protein LOC111014578 [Momordica charantia]

4.7e-24

46.4

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Query:  FVWKSFNNSIPTMVNLWDHHVSVNGTCPVCQEEMETIAHAIFWCERTREIWNILAPGEFEWSHLN--IQDLWLNLVERKGI-DFDLLCVGAWAIWNDRNN
        F+W+ FN+ +P+M NL    +  N  C VC +++ET  HA+F C+R +E+WNIL P  F     N  +QD  L LVE     DFDL+ VG WAIWNDRN 
Subjt:  FVWKSFNNSIPTMVNLWDHHVSVNGTCPVCQEEMETIAHAIFWCERTREIWNILAPGEFEWSHLN--IQDLWLNLVERKGI-DFDLLCVGAWAIWNDRNN

Query:  LIHNRQAPNLSVRCDWIKEYVSDFR
        +   RQ P+  +R DWI  YV DF+
Subjt:  LIHNRQAPNLSVRCDWIKEYVSDFR

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]

7.8e-19

34.04

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Query:  VPNKVKHFVWKSFNNSIPTMVNLWDHHVSVNGTCPVCQEEMETIAHAIFWCERTREIWNILAPGEFEWS---HLNIQDLWLNLVER-KGIDFDLLCVGAW
        VP K+K F+W+S +  IPT  NL    +     C +C +  E+I HA F C+R R+IW  L P     S   +++  +LW +L E+ +  D +L  +  W
Subjt:  VPNKVKHFVWKSFNNSIPTMVNLWDHHVSVNGTCPVCQEEMETIAHAIFWCERTREIWNILAPGEFEWS---HLNIQDLWLNLVER-KGIDFDLLCVGAW

Query:  AIWNDRNNLIHNRQAPNLSVRCDWIKEYVSDFRKANPGGIS
         IWNDRN+LIH +Q   +  +C+W+  ++    +A     S
Subjt:  AIWNDRNNLIHNRQAPNLSVRCDWIKEYVSDFRKANPGGIS

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CTE3 uncharacterized protein LOC111014578

2.3e-24

46.4

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Query:  FVWKSFNNSIPTMVNLWDHHVSVNGTCPVCQEEMETIAHAIFWCERTREIWNILAPGEFEWSHLN--IQDLWLNLVERKGI-DFDLLCVGAWAIWNDRNN
        F+W+ FN+ +P+M NL    +  N  C VC +++ET  HA+F C+R +E+WNIL P  F     N  +QD  L LVE     DFDL+ VG WAIWNDRN 
Subjt:  FVWKSFNNSIPTMVNLWDHHVSVNGTCPVCQEEMETIAHAIFWCERTREIWNILAPGEFEWSHLN--IQDLWLNLVERKGI-DFDLLCVGAWAIWNDRNN

Query:  LIHNRQAPNLSVRCDWIKEYVSDFR
        +   RQ P+  +R DWI  YV DF+
Subjt:  LIHNRQAPNLSVRCDWIKEYVSDFR

A0A6J1DX30 uncharacterized protein LOC111024874

3.8e-19

34.04

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Query:  VPNKVKHFVWKSFNNSIPTMVNLWDHHVSVNGTCPVCQEEMETIAHAIFWCERTREIWNILAPGEFEWS---HLNIQDLWLNLVER-KGIDFDLLCVGAW
        VP K+K F+W+S +  IPT  NL    +     C +C +  E+I HA F C+R R+IW  L P     S   +++  +LW +L E+ +  D +L  +  W
Subjt:  VPNKVKHFVWKSFNNSIPTMVNLWDHHVSVNGTCPVCQEEMETIAHAIFWCERTREIWNILAPGEFEWS---HLNIQDLWLNLVER-KGIDFDLLCVGAW

Query:  AIWNDRNNLIHNRQAPNLSVRCDWIKEYVSDFRKANPGGIS
         IWNDRN+LIH +Q   +  +C+W+  ++    +A     S
Subjt:  AIWNDRNNLIHNRQAPNLSVRCDWIKEYVSDFRKANPGGIS

A0A7J6EBD7 zf-RVT domain-containing protein

3.5e-17

29.25

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Query:  QGLPISGS-ALDTW--------VPNKVKHFVWKSFNNSIPTMVNLWDHHVSVNGTCPVCQEEMETIAHAIFWCERTREIWNILAPGEFEWSH-----LNI
        + LP S S    TW        +P K+ HF W+ F+  +PT + L    +  N +C +C    E+ AHAIFWC   REIW +L   EF + H     ++ 
Subjt:  QGLPISGS-ALDTW--------VPNKVKHFVWKSFNNSIPTMVNLWDHHVSVNGTCPVCQEEMETIAHAIFWCERTREIWNILAPGEFEWSH-----LNI

Query:  QDLWLNLVERKGID-FDLLCVGAWAIWNDRNNLIHNRQAPNLSVRCDWIKEYVSDFRKANPGG------ISSNQSLDDVRRLIMQGEE--MIMHSDATFR
        +++ L   E    D F+ + + AWAIW +RN + H +         +WI  Y      A  G       I  N++  +V     Q E+   I+  DA   
Subjt:  QDLWLNLVERKGID-FDLLCVGAWAIWNDRNNLIHNRQAPNLSVRCDWIKEYVSDFRKANPGG------ISSNQSLDDVRRLIMQGEE--MIMHSDATFR

Query:  NDMVSMGISIVL
        N+  S+G+  ++
Subjt:  NDMVSMGISIVL

A0A7J6GTT1 zf-RVT domain-containing protein

4.6e-17

29.72

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Query:  QGLPISGS-ALDTW--------VPNKVKHFVWKSFNNSIPTMVNLWDHHVSVNGTCPVCQEEMETIAHAIFWCERTREIWNILAPGEFEWSH-----LNI
        + LP S S    TW        +P K+ HFVW+ F+  +PT + L    +  N +C +C    E+ AHAIFWC   +EIW +L   EF + H     ++ 
Subjt:  QGLPISGS-ALDTW--------VPNKVKHFVWKSFNNSIPTMVNLWDHHVSVNGTCPVCQEEMETIAHAIFWCERTREIWNILAPGEFEWSH-----LNI

Query:  QDLWLNLVERKGID-FDLLCVGAWAIWNDRNNLIHNRQAPNLSVRCDWIKEYVSDFRKANPGG-ISS-----NQSLDDVRRLIMQGEE--MIMHSDATFR
        +++ L   E    D F+ + + AWAIW +RN + H +         +WI  Y      A  G  +SS     N++  +V     Q E+   I+  DA   
Subjt:  QDLWLNLVERKGID-FDLLCVGAWAIWNDRNNLIHNRQAPNLSVRCDWIKEYVSDFRKANPGG-ISS-----NQSLDDVRRLIMQGEE--MIMHSDATFR

Query:  NDMVSMGISIVL
        N+  S+G+  ++
Subjt:  NDMVSMGISIVL

A0A803PQ54 Uncharacterized protein

3.5e-17

29.17

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Query:  VPNKVKHFVWKSFNNSIPTMVNLWDHHVSVNGTCPVCQEEMETIAHAIFWCERTREIWNILAPGEFEWSHLN--IQDLWLN-LVERKGIDFDLLCVGAWA
        +P KVK+F W++F++ +PT  NL+   V  + +C  C   +ET+ HA+  C R R++W + +   F   H+N  I+D  L+   E K  DF LL    W+
Subjt:  VPNKVKHFVWKSFNNSIPTMVNLWDHHVSVNGTCPVCQEEMETIAHAIFWCERTREIWNILAPGEFEWSHLN--IQDLWLN-LVERKGIDFDLLCVGAWA

Query:  IWNDRNNLIHNRQAPNLSVRCDWIKEYVSDFRKANPGGISSNQSLDDVRRLIMQGE----EMIMHSDATFRNDMVSMGISIVLWDLLGNLHA
        IW  RN  +     P+      W   Y+S +R+A    I  + S   VR  ++  +       +++DA  ++    +G+  V+ D  G + A
Subjt:  IWNDRNNLIHNRQAPNLSVRCDWIKEYVSDFRKANPGGISSNQSLDDVRRLIMQGE----EMIMHSDATFRNDMVSMGISIVLWDLLGNLHA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G09510.1 Ribonuclease H-like superfamily protein

3.7e-11

30.67

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Query:  KVKHFVWKSFNNSIPTMVNLWDHHVSVNGTCPVCQEEMETIAHAIFWCERTREIW---------NILAPGEFEWSHLNIQDLWLNLVERKGI-DF-DLLC
        K+KHF+W++ + ++ T   L    + ++ +CP C  E E+I HA+F C      W         N L   +FE +  NI    LN V+   + DF  LL 
Subjt:  KVKHFVWKSFNNSIPTMVNLWDHHVSVNGTCPVCQEEMETIAHAIFWCERTREIW---------NILAPGEFEWSHLNIQDLWLNLVERKGI-DF-DLLC

Query:  VG-AWAIWNDRNNLIHN--RQAPNLSVRC------DWIKEYVSDFRKANP
        V   W IW  RNN++ N  R++P+ +V        DW+    S  +  +P
Subjt:  VG-AWAIWNDRNNLIHN--RQAPNLSVRC------DWIKEYVSDFRKANP

AT4G29090.1 Ribonuclease H-like superfamily protein

1.9e-07

27.93

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Query:  KVKHFVWKSFNNSIPTMVNLWDHHVSVNGTCPVCQEEMETIAHAIFWCERTREIW---NILAPGEFEWS-HLNIQDLWLNLVERKGIDFD----LLCVGA
        K++HF+WK  +NS+P    L   H+S    C  C    ET+ H +F C   R  W   +I  P   EW+  + +   W+  +      ++    L+    
Subjt:  KVKHFVWKSFNNSIPTMVNLWDHHVSVNGTCPVCQEEMETIAHAIFWCERTREIW---NILAPGEFEWS-HLNIQDLWLNLVERKGIDFD----LLCVGA

Query:  WAIWNDRNNLI
        W +W +RN L+
Subjt:  WAIWNDRNNLI

Sequences

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CDS sequence

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ATGTCCAAGGATGTAGATAAACTCGATCATTTTCTGATGAGGGACGATGTAGAAATAATCCAAGGTCTGCCGATCAGTGGCTCTGCTTTGGATACTTGGGTTCCTAATAA
GGTTAAGCACTTTGTATGGAAATCCTTCAATAACTCAATTCCTACTATGGTTAATTTGTGGGACCATCATGTCTCGGTTAATGGGACTTGTCCGGTTTGTCAAGAGGAGA
TGGAGACTATCGCGCATGCCATATTCTGGTGTGAAAGGACAAGAGAGATCTGGAATATTCTAGCTCCTGGTGAGTTTGAGTGGAGCCATTTGAATATACAAGATTTGTGG
TTAAATTTGGTAGAGAGGAAAGGGATCGATTTTGATCTGTTATGTGTAGGTGCATGGGCGATATGGAATGATAGGAACAACTTGATTCATAATCGTCAAGCTCCCAACCT
GAGTGTGCGGTGTGATTGGATTAAGGAATATGTGTCTGATTTTCGAAAGGCCAATCCGGGGGGCATTTCTTCAAATCAATCTTTGGATGACGTTCGCAGACTTATCATGC
AAGGTGAAGAGATGATTATGCACTCCGATGCTACTTTTAGGAATGACATGGTATCTATGGGAATCAGCATTGTTTTGTGGGATTTGCTTGGCAATCTTCATGCGGTGAAG
CAAACTTCGGCTGCTTAG

mRNA sequence

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Protein sequence

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MSKDVDKLDHFLMRDDVEIIQGLPISGSALDTWVPNKVKHFVWKSFNNSIPTMVNLWDHHVSVNGTCPVCQEEMETIAHAIFWCERTREIWNILAPGEFEWSHLNIQDLW
LNLVERKGIDFDLLCVGAWAIWNDRNNLIHNRQAPNLSVRCDWIKEYVSDFRKANPGGISSNQSLDDVRRLIMQGEEMIMHSDATFRNDMVSMGISIVLWDLLGNLHAVK
QTSAA

Lag0016681 (gene) of Sponge gourd (AG-4) v1 genome