; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0016906 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0016906
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionU6 snRNA-associated Sm-like protein LSm1
Genome locationchr12:42225334..42228029
RNA-Seq ExpressionLag0016906
SyntenyLag0016906
Gene Ontology termsGO:0000956 - nuclear-transcribed mRNA catabolic process (biological process)
GO:0009605 - response to external stimulus (biological process)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR034104 - Sm-like protein Lsm1
IPR044642 - U6 snRNA-associated Sm-like protein Lsm1/8


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581771.1 Sm-like protein LSM1B, partial [Cucurbita argyrosperma subsp. sororia]4.1e-4942.16Show/hide
Query:  MHNKFKFQNKASQSFPSTEQFEETSPSLPLGLLAIGTFGNNELRV-KTDDEDGVVD-KSPADETETEDCSLEDVPRLEEELREILQQSSQLGGEEIDGFD
        +H + KFQNK+S S PS EQ EETSPSLPLGLLAIGTFGNN LR  KTD E+ VVD +SP  E       +EDV     ELREI                
Subjt:  MHNKFKFQNKASQSFPSTEQFEETSPSLPLGLLAIGTFGNNELRV-KTDDEDGVVD-KSPADETETEDCSLEDVPRLEEELREILQQSSQLGGEEIDGFD

Query:  NETEEAVKKKIGLEIGEWKGCDDEKISNRKSIVKRSVSFLVKKIFVC-GSGFTPMPPSPSPNFMDPPQDATMKKVLRMMLHKKIYPKNSSQMVSLKSWQS
           ++ +K+KIGL IG     DDEK  N KSIVKRSVSFLVKK+FVC GSGFT  PP P  NFMD PQDATMKKV +             Q+VS+     
Subjt:  NETEEAVKKKIGLEIGEWKGCDDEKISNRKSIVKRSVSFLVKKIFVC-GSGFTPMPPSPSPNFMDPPQDATMKKVLRMMLHKKIYPKNSSQMVSLKSWQS

Query:  WSSILYLNAGKSTWVGVHWKEINLELGLKRNESFQFSSVTMSWGSWLRPEHIFLTTSLGAYLDRKILLMLFDGRHFIGIMRSFDHHGNIVLQDAFERIIV
                                           ++ +T                                               N V++ AFERI+ 
Subjt:  WSSILYLNAGKSTWVGVHWKEINLELGLKRNESFQFSSVTMSWGSWLRPEHIFLTTSLGAYLDRKILLMLFDGRHFIGIMRSFDHHGNIVLQDAFERIIV

Query:  GNLYCDDRKGLVLARAENAILVGEMDSRFPELPPDMTTVSLPEILTAQKAEMDSSRLKRSFKKWMEEFLD
         N YCD   GL++ R +NA+ +GEMD  FPELPP +T VSLP+IL A+KAE++SS LKR+ KKWMEE LD
Subjt:  GNLYCDDRKGLVLARAENAILVGEMDSRFPELPPDMTTVSLPEILTAQKAEMDSSRLKRSFKKWMEEFLD

KGN58611.2 hypothetical protein Csa_001406 [Cucumis sativus]4.4e-5162.75Show/hide
Query:  MHNKFKFQNKAS--QSFPST--EQFEETSPSLPLGLLAIGTFGN--NELR-VKTDDEDGVVD-KSPADETETE-DCSLEDVPRLEEELREILQQSSQLGG
        +  K KFQNK S   S PST  +  EE+S SLPLGLLAIGTFGN  NEL+ VKTDDE+ ++D KS  +ET+ + D SLE VP LEEEL ++ QQ+S L  
Subjt:  MHNKFKFQNKAS--QSFPST--EQFEETSPSLPLGLLAIGTFGN--NELR-VKTDDEDGVVD-KSPADETETE-DCSLEDVPRLEEELREILQQSSQLGG

Query:  EEIDGFDNE--TEEAVKKKIGLEIGEWKGCDDEKISNRKSIVKRSVSFLVKKIFVCGSGFTPMPPSPSPNFMDPPQDATMKKVLRMMLHKKIYPKNSSQM
        EE D FD++   E+ VKK +GL + EW+G  ++    R SIVKRSVSFL+KKIF+CGSGF P+PPSP PNFMD PQDATMKK+LRMML KKIYPKNSSQM
Subjt:  EEIDGFDNE--TEEAVKKKIGLEIGEWKGCDDEKISNRKSIVKRSVSFLVKKIFVCGSGFTPMPPSPSPNFMDPPQDATMKKVLRMMLHKKIYPKNSSQM

Query:  VSLK
         SLK
Subjt:  VSLK

XP_008460313.1 PREDICTED: uncharacterized protein LOC103499172 [Cucumis melo]6.3e-5061.76Show/hide
Query:  MHNKFKFQNKAS--QSFPST--EQFEETSPSLPLGLLAIGTFGN--NELRV-KTDDEDGVVD-KSPADETETE-DCSLEDVPRLEEELREILQQSSQLGG
        +  K KFQNK S   S PST  +  EE+S SLPLGLLAIGTFGN  N+++V KTD E+ V+D KS ++ET+ + D SL+DVP LEEEL ++ QQ+SQ   
Subjt:  MHNKFKFQNKAS--QSFPST--EQFEETSPSLPLGLLAIGTFGN--NELRV-KTDDEDGVVD-KSPADETETE-DCSLEDVPRLEEELREILQQSSQLGG

Query:  EEIDGFDNE--TEEAVKKKIGLEIGEWKGCDDEKISNRKSIVKRSVSFLVKKIFVCGSGFTPMPPSPSPNFMDPPQDATMKKVLRMMLHKKIYPKNSSQM
        EE D FD++   E+ VKK IGL + EW+G  ++      SIVKRSV+FLVKKIF+CGSGF P+PPSP PNFMD PQDATMKK+LRMML KKIYPKNSSQM
Subjt:  EEIDGFDNE--TEEAVKKKIGLEIGEWKGCDDEKISNRKSIVKRSVSFLVKKIFVCGSGFTPMPPSPSPNFMDPPQDATMKKVLRMMLHKKIYPKNSSQM

Query:  VSLK
         SLK
Subjt:  VSLK

XP_031739135.1 uncharacterized protein LOC105434935 [Cucumis sativus]4.4e-5162.75Show/hide
Query:  MHNKFKFQNKAS--QSFPST--EQFEETSPSLPLGLLAIGTFGN--NELR-VKTDDEDGVVD-KSPADETETE-DCSLEDVPRLEEELREILQQSSQLGG
        +  K KFQNK S   S PST  +  EE+S SLPLGLLAIGTFGN  NEL+ VKTDDE+ ++D KS  +ET+ + D SLE VP LEEEL ++ QQ+S L  
Subjt:  MHNKFKFQNKAS--QSFPST--EQFEETSPSLPLGLLAIGTFGN--NELR-VKTDDEDGVVD-KSPADETETE-DCSLEDVPRLEEELREILQQSSQLGG

Query:  EEIDGFDNE--TEEAVKKKIGLEIGEWKGCDDEKISNRKSIVKRSVSFLVKKIFVCGSGFTPMPPSPSPNFMDPPQDATMKKVLRMMLHKKIYPKNSSQM
        EE D FD++   E+ VKK +GL + EW+G  ++    R SIVKRSVSFL+KKIF+CGSGF P+PPSP PNFMD PQDATMKK+LRMML KKIYPKNSSQM
Subjt:  EEIDGFDNE--TEEAVKKKIGLEIGEWKGCDDEKISNRKSIVKRSVSFLVKKIFVCGSGFTPMPPSPSPNFMDPPQDATMKKVLRMMLHKKIYPKNSSQM

Query:  VSLK
         SLK
Subjt:  VSLK

XP_038889127.1 protein NEGATIVE GRAVITROPIC RESPONSE OF ROOTS-like [Benincasa hispida]1.2e-5668.5Show/hide
Query:  MHNKFKFQNKASQSFPSTEQFEETSPSLPLGLLAIGTFGNN---ELRVKTDDEDGVVD-KSPADETETEDCSLEDVPRLEEELREILQQSSQLGGEEIDG
        +  K KFQNK S S  S EQ EETSP LPLGLLAIGTFGNN    +   TD E+ VVD +SP+ ETE E  SLED+P+LEEELRE+ QQ++QLG EE D 
Subjt:  MHNKFKFQNKASQSFPSTEQFEETSPSLPLGLLAIGTFGNN---ELRVKTDDEDGVVD-KSPADETETEDCSLEDVPRLEEELREILQQSSQLGGEEIDG

Query:  FDNE--TEEAVKKKIG-LEIGEWKGCDDEKISNRKSIVKRSVSFLVKKIFVCGSGFTPMPPSPSPNFMDPPQDATMKKVLRMMLHKKIYPKNSSQMVSLK
        FDN+   E+ VKK IG L IGEWK  DDEK ++ KSIVKRSVSFLVKKIFVCGSGF P+PP P  +FMD PQDATMKK+LRMML KKIYPKNSSQM SLK
Subjt:  FDNE--TEEAVKKKIG-LEIGEWKGCDDEKISNRKSIVKRSVSFLVKKIFVCGSGFTPMPPSPSPNFMDPPQDATMKKVLRMMLHKKIYPKNSSQMVSLK

TrEMBL top hitse value%identityAlignment
A0A1R3HJV0 Sm domain-containing protein1.7e-4536.19Show/hide
Query:  NKASQSFPSTEQFEETSPSLPLGLLAIGTFGNNELRVK--TDDEDGVVDKSPADETETEDCSLEDVPRLEEELREILQQ----SSQLGGEEIDGFDN---
        + +S S    ++  E     P GLLAIGTFGNN+L+ K   DDE  + ++ P+   +  + + E+V +L++EL ++L +      +L    +D F N   
Subjt:  NKASQSFPSTEQFEETSPSLPLGLLAIGTFGNNELRVK--TDDEDGVVDKSPADETETEDCSLEDVPRLEEELREILQQ----SSQLGGEEIDGFDN---

Query:  -----------------ETEEAVKKKIGLEIGEWKG-CDDEKISNRKSIVKRSVSFLVKKIFVCGSGFTPMPPSPSPNFMDPPQDATMKKVLRMMLHKKI
                         + +E + + I + +G  K  C  E  + +K+I K+S+SFL+KK+FVC SGF     SP+P+  D  Q++ M+K+LR+MLHKKI
Subjt:  -----------------ETEEAVKKKIGLEIGEWKG-CDDEKISNRKSIVKRSVSFLVKKIFVCGSGFTPMPPSPSPNFMDPPQDATMKKVLRMMLHKKI

Query:  YPKNSSQMVSLKSWQSWSSILYLNAGKSTWVGVHWKEINLELGLKRNESFQFSSVTMSWGSWLR--PEHIFLTTSLGAYLDRKILLMLFDGRHFIGIMRS
        Y +N S+  S+K         YL   +S+      ++ N        +  + S     W       PE I+L+TSL +YLD+K+L++L DGR  +G +RS
Subjt:  YPKNSSQMVSLKSWQSWSSILYLNAGKSTWVGVHWKEINLELGLKRNESFQFSSVTMSWGSWLR--PEHIFLTTSLGAYLDRKILLMLFDGRHFIGIMRS

Query:  FDHHGNIVLQDAFERIIVGNLYCDDRKGLVLARAENAILVGEMDSRFPELPPDMTTVSLPEI
        FD   N VL+ A ER+IVG+LYCD   GL + R EN +L+GE+D    ELPP MT VS  EI
Subjt:  FDHHGNIVLQDAFERIIVGNLYCDDRKGLVLARAENAILVGEMDSRFPELPPDMTTVSLPEI

A0A1S3CCN5 uncharacterized protein LOC1034991723.0e-5061.76Show/hide
Query:  MHNKFKFQNKAS--QSFPST--EQFEETSPSLPLGLLAIGTFGN--NELRV-KTDDEDGVVD-KSPADETETE-DCSLEDVPRLEEELREILQQSSQLGG
        +  K KFQNK S   S PST  +  EE+S SLPLGLLAIGTFGN  N+++V KTD E+ V+D KS ++ET+ + D SL+DVP LEEEL ++ QQ+SQ   
Subjt:  MHNKFKFQNKAS--QSFPST--EQFEETSPSLPLGLLAIGTFGN--NELRV-KTDDEDGVVD-KSPADETETE-DCSLEDVPRLEEELREILQQSSQLGG

Query:  EEIDGFDNE--TEEAVKKKIGLEIGEWKGCDDEKISNRKSIVKRSVSFLVKKIFVCGSGFTPMPPSPSPNFMDPPQDATMKKVLRMMLHKKIYPKNSSQM
        EE D FD++   E+ VKK IGL + EW+G  ++      SIVKRSV+FLVKKIF+CGSGF P+PPSP PNFMD PQDATMKK+LRMML KKIYPKNSSQM
Subjt:  EEIDGFDNE--TEEAVKKKIGLEIGEWKGCDDEKISNRKSIVKRSVSFLVKKIFVCGSGFTPMPPSPSPNFMDPPQDATMKKVLRMMLHKKIYPKNSSQM

Query:  VSLK
         SLK
Subjt:  VSLK

A0A4S8IMI0 Sm domain-containing protein6.8e-4236.87Show/hide
Query:  STEQFEETSPSLPLGLLAIGTFGNNELRVKTDDEDGVVDKSPADETETEDCSLEDVPRLEEELREIL--QQSSQLGGEEIDGFDNETEEA---VKKKIGL
        S E+FE+     P  LLAIGT GN +++ +    +   +   ++  +  D ++E++ R + EL ++L  + +S     EI   D    +    V     L
Subjt:  STEQFEETSPSLPLGLLAIGTFGNNELRVKTDDEDGVVDKSPADETETEDCSLEDVPRLEEELREIL--QQSSQLGGEEIDGFDNETEEA---VKKKIGL

Query:  EIGE---------------WKGCDDEKISNRKSIVKRSVSFLVKKIFVCGSGFTPMPPSPSPNFMDPPQDATMKKVLRMMLHKKIYPKNSSQMVSLKSWQ
        E+                      D  +SNR +I K S+SFL KK+FVCG GF     +P  N  DP  +  + KVLR +L KKIYP++S+   + K   
Subjt:  EIGE---------------WKGCDDEKISNRKSIVKRSVSFLVKKIFVCGSGFTPMPPSPSPNFMDPPQDATMKKVLRMMLHKKIYPKNSSQMVSLKSWQ

Query:  SWSSILYLNAGKSTWVGVHWKEINLELGLKRNESFQF----SSVTMSWG--SWLRPEHIFLTTSLGAYLDRKILLMLFDGRHFIGIMRSFDHHGNIVLQD
              YL A K T          ++   K+ + +++    S     WG  SW  PE I  +TSL +YLD+K+L++L DGR  +GI+ SFD   N+VLQ 
Subjt:  SWSSILYLNAGKSTWVGVHWKEINLELGLKRNESFQF----SSVTMSWG--SWLRPEHIFLTTSLGAYLDRKILLMLFDGRHFIGIMRSFDHHGNIVLQD

Query:  AFERIIVGNLYCDDRKGLVLARAENAILVGEMDSRFPELPPDMTTVSLPEILTAQKAEMDSSRLKRSFKKWMEEFLD
        A ER+IVG+LYCD   GL + R EN +L+GEMDS   ELP  M  VS  EI  AQKAE D++ LK S +K M EFLD
Subjt:  AFERIIVGNLYCDDRKGLVLARAENAILVGEMDSRFPELPPDMTTVSLPEILTAQKAEMDSSRLKRSFKKWMEEFLD

A0A5A7UIH7 Uncharacterized protein4.9e-4059.02Show/hide
Query:  MHNKFKFQNKAS--QSFPST--EQFEETSPSLPLGLLAIGTFGN--NELRV-KTDDEDGVVD-KSPADETETE-DCSLEDVPRLEEELREILQQSSQLGG
        +  K KFQNK S   S PST  +  EE+S SLPLGLLAIGTFGN  N+++V KTD E+ V+D KS ++ET+ + D SL+DVP LEEEL ++ QQ+SQ   
Subjt:  MHNKFKFQNKAS--QSFPST--EQFEETSPSLPLGLLAIGTFGN--NELRV-KTDDEDGVVD-KSPADETETE-DCSLEDVPRLEEELREILQQSSQLGG

Query:  EEIDGFDNE--TEEAVKKKIGLEIGEWKGCDDEKISNRKSIVKRSVSFLVKKIFVCGSGFTPMPPSPSPNFMDPPQDATMKKV
        EE D FD++   E+ VKK IGL + EW+G  ++      SIVKRSV+FLVKKIF+CGSGF P+PPSP PNFMD PQDATMKKV
Subjt:  EEIDGFDNE--TEEAVKKKIGLEIGEWKGCDDEKISNRKSIVKRSVSFLVKKIFVCGSGFTPMPPSPSPNFMDPPQDATMKKV

A0A803NYC1 Uncharacterized protein3.5e-4635.01Show/hide
Query:  MHNKF--KFQNKASQSFPST----EQFEETSPSLPLGLLAIGTFGNNELR-------VKTDDEDGVVDKSPADETETEDCSLEDVPRLEEELREILQQSS
        M NK   K   K + + P+T    ++  E     P GLL+IGTFGN++++          +D D +V ++     E  D + E+V +L++EL ++L +  
Subjt:  MHNKF--KFQNKASQSFPST----EQFEETSPSLPLGLLAIGTFGNNELR-------VKTDDEDGVVDKSPADETETEDCSLEDVPRLEEELREILQQSS

Query:  QLGGE----EIDGF----------------------------DNETEEAVKKKIGLEIGEWKGCDDEKISNRKSIVKRSVSFLVKKIFVCGSGFTPMPPS
         +  E     +D F                            D   +E + K I + +G+ +       + + +I K+S+SFL+KK+FVCGSGF      
Subjt:  QLGGE----EIDGF----------------------------DNETEEAVKKKIGLEIGEWKGCDDEKISNRKSIVKRSVSFLVKKIFVCGSGFTPMPPS

Query:  PSPNFMDPPQDATMKKVLRMMLHKKIYPKNSSQMVSLKSWQSWSSILYLNAGKSTWVGVHWKEINLELGLKRNESFQFSSVTMSWGSWLR-----PEHIF
        P+P+  D  Q++ M+K+LR MLHKK+ P+N ++  S K +     I      K T         N +   + NE  +    T   G W++     PE I 
Subjt:  PSPNFMDPPQDATMKKVLRMMLHKKIYPKNSSQMVSLKSWQSWSSILYLNAGKSTWVGVHWKEINLELGLKRNESFQFSSVTMSWGSWLR-----PEHIF

Query:  LTTSLGAYLDRKILLMLFDGRHFIGIMRSFDHHGNIVLQDAFERIIVGNLYCDDRKGLVLARAENAILVGEMDSRFPELPPDMTTVSLPEILTAQKAEMD
        L+TSL +YLD+K+L++L DGR  +GI+RSFD   N VL+ A ER+IVG LYCD   GL + R EN +L+GE+D    ELPP MT VS  EI  AQKAE +
Subjt:  LTTSLGAYLDRKILLMLFDGRHFIGIMRSFDHHGNIVLQDAFERIIVGNLYCDDRKGLVLARAENAILVGEMDSRFPELPPDMTTVSLPEILTAQKAEMD

Query:  SSRLKRSFKKWMEEFLD
        +S LK + +K M EFLD
Subjt:  SSRLKRSFKKWMEEFLD

SwissProt top hitse value%identityAlignment
A0A072TLV8 Protein NEGATIVE GRAVITROPIC RESPONSE OF ROOTS4.3e-1734.08Show/hide
Query:  MHNKF--KFQNKASQSFPST-----EQFEETSPSLPLGLLAIGTFGNNELRVKTDDEDGVVDKSPADETETEDCSLEDVPRLEEELREILQQSSQLGGE-
        M NK   K +N+ S +  ST     E  EE S   P  LLAIGTFGNN    +  +      + P+   E  D + E++ +L++EL  +L++   +  E 
Subjt:  MHNKF--KFQNKASQSFPST-----EQFEETSPSLPLGLLAIGTFGNNELRVKTDDEDGVVDKSPADETETEDCSLEDVPRLEEELREILQQSSQLGGE-

Query:  ---EIDGFDN-----ETEEAVKKKIGLEIGEWKGCDDEKI--------------SNRKSIVKRSVSFLVKKIFVCGSGFTPMPPSPSPNFMDPPQDATMK
            +D F N     E +  +   +  E G  K  D EK                ++KSI K+S+SFL+KK+FVC SGF     +P+P+  D  Q++ M+
Subjt:  ---EIDGFDN-----ETEEAVKKKIGLEIGEWKGCDDEKI--------------SNRKSIVKRSVSFLVKKIFVCGSGFTPMPPSPSPNFMDPPQDATMK

Query:  KVLRMMLHKKIYPKNSSQMVSLK
        K+LR MLHKK+Y +N+S+   LK
Subjt:  KVLRMMLHKKIYPKNSSQMVSLK

A0A251PW43 Protein DEEPER ROOTING 12.5e-1731.88Show/hide
Query:  PSTEQFEETSPSLPLGLLAIGTFGNNELRVKTDDEDGVVDKSPADETETEDCSLEDVPRLEEELREILQQSSQLGGE----------------EI-----
        P+ ++  E     P GLLAIGTFGNN+L+    +   + +   + E   ++ + E+V +L +EL ++L +   +  E                E+     
Subjt:  PSTEQFEETSPSLPLGLLAIGTFGNNELRVKTDDEDGVVDKSPADETETEDCSLEDVPRLEEELREILQQSSQLGGE----------------EI-----

Query:  -----DGFDNETEEAVKKKIGLEIGEWKGCDDEKISNRKSIVKRSVSFLVKKIFVCGSGFTPMPPSPSPNFMDPPQDATMKKVLRMMLHKKIY-PKNSSQ
             D  D+  +E ++K I + +G  K    +K  N+K+I K+S+SFL+KK+FVC SGF     +P P+  D  Q++ M+K+LR+ML+KKI  P+ SS+
Subjt:  -----DGFDNETEEAVKKKIGLEIGEWKGCDDEKISNRKSIVKRSVSFLVKKIFVCGSGFTPMPPSPSPNFMDPPQDATMKKVLRMMLHKKIY-PKNSSQ

Query:  MVSLKSW
          S+K +
Subjt:  MVSLKSW

Q5XVG3 Protein LAZY 44.0e-1530.33Show/hide
Query:  MHNKFKFQNKASQSFPSTEQFEETSPSLPLGLLAIGTFGNNELRVKTDDEDGVVDK-------------------SPADETETEDCSLEDVPRLEEELRE
        +H K +  ++ S S  S+    E     P GLLAIGTFGN +   +T D++ + ++                   S +D+ E ED + E+V +L++EL +
Subjt:  MHNKFKFQNKASQSFPSTEQFEETSPSLPLGLLAIGTFGNNELRVKTDDEDGVVDK-------------------SPADETETEDCSLEDVPRLEEELRE

Query:  ILQQSS---------QLGGEEIDGFDN-----------------ETEEAVKKKIGLEIGEWKGCDDEKIS----NRKSIVKRSVSFLVKKIFVCGSGFTP
        +L + S         +L    +D F N                 E EE +++ I + +G  K    E  +    N++ + K SVS L+KK+FVC  GF+P
Subjt:  ILQQSS---------QLGGEEIDGFDN-----------------ETEEAVKKKIGLEIGEWKGCDDEKIS----NRKSIVKRSVSFLVKKIFVCGSGFTP

Query:  MPPSPSPNFMDPPQDATMKKVLRMMLHKKIYPKNSSQMVSLKSW
        +   P P   D  Q+  M+K+LRMMLHKK+  + SS+  S K +
Subjt:  MPPSPSPNFMDPPQDATMKKVLRMMLHKKIYPKNSSQMVSLKSW

Q8LFL8 Sm-like protein LSM1B1.1e-2852.38Show/hide
Query:  SWLRPEHIFLTTSLGAYLDRKILLMLFDGRHFIGIMRSFDHHGNIVLQDAFERIIVGNLYCDDRKGLVLARAENAILVGEMDSRFPELPPDMTTVSLPEI
        SW  PE I+L+TSL +YLDRK+L++L DGR  +G +RSFD   N VL+ A ER+IVG  YCD   GL + R EN +L+GE+D+   ELPP M  VS  EI
Subjt:  SWLRPEHIFLTTSLGAYLDRKILLMLFDGRHFIGIMRSFDHHGNIVLQDAFERIIVGNLYCDDRKGLVLARAENAILVGEMDSRFPELPPDMTTVSLPEI

Query:  LTAQKAEMDSSRLKRSFKKWMEEFLD
          AQK E ++S L+ + +K M EFLD
Subjt:  LTAQKAEMDSSRLKRSFKKWMEEFLD

Q945P8 Sm-like protein LSM1A1.4e-2851.59Show/hide
Query:  SWLRPEHIFLTTSLGAYLDRKILLMLFDGRHFIGIMRSFDHHGNIVLQDAFERIIVGNLYCDDRKGLVLARAENAILVGEMDSRFPELPPDMTTVSLPEI
        SW  P+ IF +TSL AYLD+K+L++L DGR  +G++RSFD   N VL++A+ER+IVG+LYCD   GL + R EN +L+GE+D    ELP  M  V   EI
Subjt:  SWLRPEHIFLTTSLGAYLDRKILLMLFDGRHFIGIMRSFDHHGNIVLQDAFERIIVGNLYCDDRKGLVLARAENAILVGEMDSRFPELPPDMTTVSLPEI

Query:  LTAQKAEMDSSRLKRSFKKWMEEFLD
          AQKAE +   LK + +K M EFLD
Subjt:  LTAQKAEMDSSRLKRSFKKWMEEFLD

Arabidopsis top hitse value%identityAlignment
AT1G17400.1 unknown protein8.6e-1328.63Show/hide
Query:  HNKFKFQNKASQSFPSTEQFEETSPSLPLGLLAIGTFGNNELRVKTDDEDGV---------------VDKSPADETETEDCSLEDVPRLEEELREILQQS
        HN+    + AS      E  EE S   P  LLAIGTFG     V  ++   V                ++ P+     ED + E+V +L++EL ++L ++
Subjt:  HNKFKFQNKASQSFPSTEQFEETSPSLPLGLLAIGTFGNNELRVKTDDEDGV---------------VDKSPADETETEDCSLEDVPRLEEELREILQQS

Query:  SQLGGE---------------------------------EIDGFDNETEEAVKKKIGLEIGEWKGCDDEKISNRK--SIVKRSVSFLVKKIFVCGSGFTP
         +   +                                  +D  +   EE +++ I + +G  K    E  +N+K   I K SVS+L KKIFVC  G + 
Subjt:  SQLGGE---------------------------------EIDGFDNETEEAVKKKIGLEIGEWKGCDDEKISNRK--SIVKRSVSFLVKKIFVCGSGFTP

Query:  MPPSPSPNFMDPPQDATMKKVLRMMLHKKIYPKNSSQMVSL
           +PSP+  D  Q++ M+K+L+MMLHKKI  + SS+  SL
Subjt:  MPPSPSPNFMDPPQDATMKKVLRMMLHKKIYPKNSSQMVSL

AT1G19120.1 Small nuclear ribonucleoprotein family protein1.0e-2951.59Show/hide
Query:  SWLRPEHIFLTTSLGAYLDRKILLMLFDGRHFIGIMRSFDHHGNIVLQDAFERIIVGNLYCDDRKGLVLARAENAILVGEMDSRFPELPPDMTTVSLPEI
        SW  P+ IF +TSL AYLD+K+L++L DGR  +G++RSFD   N VL++A+ER+IVG+LYCD   GL + R EN +L+GE+D    ELP  M  V   EI
Subjt:  SWLRPEHIFLTTSLGAYLDRKILLMLFDGRHFIGIMRSFDHHGNIVLQDAFERIIVGNLYCDDRKGLVLARAENAILVGEMDSRFPELPPDMTTVSLPEI

Query:  LTAQKAEMDSSRLKRSFKKWMEEFLD
          AQKAE +   LK + +K M EFLD
Subjt:  LTAQKAEMDSSRLKRSFKKWMEEFLD

AT1G72490.1 unknown protein2.8e-1630.33Show/hide
Query:  MHNKFKFQNKASQSFPSTEQFEETSPSLPLGLLAIGTFGNNELRVKTDDEDGVVDK-------------------SPADETETEDCSLEDVPRLEEELRE
        +H K +  ++ S S  S+    E     P GLLAIGTFGN +   +T D++ + ++                   S +D+ E ED + E+V +L++EL +
Subjt:  MHNKFKFQNKASQSFPSTEQFEETSPSLPLGLLAIGTFGNNELRVKTDDEDGVVDK-------------------SPADETETEDCSLEDVPRLEEELRE

Query:  ILQQSS---------QLGGEEIDGFDN-----------------ETEEAVKKKIGLEIGEWKGCDDEKIS----NRKSIVKRSVSFLVKKIFVCGSGFTP
        +L + S         +L    +D F N                 E EE +++ I + +G  K    E  +    N++ + K SVS L+KK+FVC  GF+P
Subjt:  ILQQSS---------QLGGEEIDGFDN-----------------ETEEAVKKKIGLEIGEWKGCDDEKIS----NRKSIVKRSVSFLVKKIFVCGSGFTP

Query:  MPPSPSPNFMDPPQDATMKKVLRMMLHKKIYPKNSSQMVSLKSW
        +   P P   D  Q+  M+K+LRMMLHKK+  + SS+  S K +
Subjt:  MPPSPSPNFMDPPQDATMKKVLRMMLHKKIYPKNSSQMVSLKSW

AT3G14080.1 Small nuclear ribonucleoprotein family protein7.7e-3052.38Show/hide
Query:  SWLRPEHIFLTTSLGAYLDRKILLMLFDGRHFIGIMRSFDHHGNIVLQDAFERIIVGNLYCDDRKGLVLARAENAILVGEMDSRFPELPPDMTTVSLPEI
        SW  PE I+L+TSL +YLDRK+L++L DGR  +G +RSFD   N VL+ A ER+IVG  YCD   GL + R EN +L+GE+D+   ELPP M  VS  EI
Subjt:  SWLRPEHIFLTTSLGAYLDRKILLMLFDGRHFIGIMRSFDHHGNIVLQDAFERIIVGNLYCDDRKGLVLARAENAILVGEMDSRFPELPPDMTTVSLPEI

Query:  LTAQKAEMDSSRLKRSFKKWMEEFLD
          AQK E ++S L+ + +K M EFLD
Subjt:  LTAQKAEMDSSRLKRSFKKWMEEFLD

AT3G14080.2 Small nuclear ribonucleoprotein family protein7.7e-3052.38Show/hide
Query:  SWLRPEHIFLTTSLGAYLDRKILLMLFDGRHFIGIMRSFDHHGNIVLQDAFERIIVGNLYCDDRKGLVLARAENAILVGEMDSRFPELPPDMTTVSLPEI
        SW  PE I+L+TSL +YLDRK+L++L DGR  +G +RSFD   N VL+ A ER+IVG  YCD   GL + R EN +L+GE+D+   ELPP M  VS  EI
Subjt:  SWLRPEHIFLTTSLGAYLDRKILLMLFDGRHFIGIMRSFDHHGNIVLQDAFERIIVGNLYCDDRKGLVLARAENAILVGEMDSRFPELPPDMTTVSLPEI

Query:  LTAQKAEMDSSRLKRSFKKWMEEFLD
          AQK E ++S L+ + +K M EFLD
Subjt:  LTAQKAEMDSSRLKRSFKKWMEEFLD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATAATAAATTCAAATTTCAGAACAAAGCATCACAATCATTTCCTTCAACTGAGCAATTTGAAGAAACCAGCCCCTCCTTGCCTCTTGGCCTGCTAGCAATTGGAAC
TTTTGGCAACAATGAGTTAAGAGTGAAAACCGACGACGAAGACGGCGTCGTCGATAAATCTCCGGCGGACGAAACCGAAACCGAAGACTGTTCTCTTGAAGATGTACCTA
GATTAGAAGAGGAGTTGAGGGAGATTTTGCAGCAAAGCTCTCAACTTGGTGGAGAGGAAATTGATGGTTTTGATAATGAAACAGAAGAAGCTGTGAAAAAGAAGATTGGT
TTAGAGATTGGGGAATGGAAGGGTTGTGATGATGAGAAAATTAGTAATCGCAAATCCATTGTGAAGAGATCCGTATCGTTTCTGGTCAAGAAGATCTTTGTCTGTGGGAG
TGGTTTTACACCGATGCCGCCGTCGCCGTCGCCGAACTTCATGGACCCGCCACAAGATGCAACGATGAAGAAGGTTTTGAGGATGATGCTTCACAAGAAGATCTACCCTA
AGAATTCTTCTCAAATGGTTTCATTGAAGAGTTGGCAATCTTGGTCATCAATACTTTATTTAAACGCAGGGAAATCCACATGGGTTGGCGTCCATTGGAAAGAGATCAAC
TTGGAATTAGGCCTCAAACGAAACGAAAGCTTCCAATTTTCTTCAGTTACAATGTCTTGGGGCTCTTGGTTACGACCCGAACACATCTTCCTCACTACTTCTCTCGGCGC
TTATCTCGACCGCAAAATACTGCTTATGCTTTTTGATGGACGTCATTTCATCGGCATCATGCGTTCCTTCGACCATCACGGTAACATTGTTCTTCAGGATGCATTTGAAA
GAATTATTGTTGGCAATCTCTATTGCGATGACCGCAAGGGACTCGTCTTGGCTCGAGCCGAGAATGCGATTCTAGTCGGAGAGATGGACTCCAGATTCCCAGAACTTCCT
CCTGATATGACTACCGTCTCACTGCCTGAGATTTTAACTGCTCAGAAAGCAGAAATGGACTCATCAAGGCTTAAAAGAAGCTTCAAGAAATGGATGGAGGAATTCCTTGA
CGATTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCATAATAAATTCAAATTTCAGAACAAAGCATCACAATCATTTCCTTCAACTGAGCAATTTGAAGAAACCAGCCCCTCCTTGCCTCTTGGCCTGCTAGCAATTGGAAC
TTTTGGCAACAATGAGTTAAGAGTGAAAACCGACGACGAAGACGGCGTCGTCGATAAATCTCCGGCGGACGAAACCGAAACCGAAGACTGTTCTCTTGAAGATGTACCTA
GATTAGAAGAGGAGTTGAGGGAGATTTTGCAGCAAAGCTCTCAACTTGGTGGAGAGGAAATTGATGGTTTTGATAATGAAACAGAAGAAGCTGTGAAAAAGAAGATTGGT
TTAGAGATTGGGGAATGGAAGGGTTGTGATGATGAGAAAATTAGTAATCGCAAATCCATTGTGAAGAGATCCGTATCGTTTCTGGTCAAGAAGATCTTTGTCTGTGGGAG
TGGTTTTACACCGATGCCGCCGTCGCCGTCGCCGAACTTCATGGACCCGCCACAAGATGCAACGATGAAGAAGGTTTTGAGGATGATGCTTCACAAGAAGATCTACCCTA
AGAATTCTTCTCAAATGGTTTCATTGAAGAGTTGGCAATCTTGGTCATCAATACTTTATTTAAACGCAGGGAAATCCACATGGGTTGGCGTCCATTGGAAAGAGATCAAC
TTGGAATTAGGCCTCAAACGAAACGAAAGCTTCCAATTTTCTTCAGTTACAATGTCTTGGGGCTCTTGGTTACGACCCGAACACATCTTCCTCACTACTTCTCTCGGCGC
TTATCTCGACCGCAAAATACTGCTTATGCTTTTTGATGGACGTCATTTCATCGGCATCATGCGTTCCTTCGACCATCACGGTAACATTGTTCTTCAGGATGCATTTGAAA
GAATTATTGTTGGCAATCTCTATTGCGATGACCGCAAGGGACTCGTCTTGGCTCGAGCCGAGAATGCGATTCTAGTCGGAGAGATGGACTCCAGATTCCCAGAACTTCCT
CCTGATATGACTACCGTCTCACTGCCTGAGATTTTAACTGCTCAGAAAGCAGAAATGGACTCATCAAGGCTTAAAAGAAGCTTCAAGAAATGGATGGAGGAATTCCTTGA
CGATTTTTGA
Protein sequenceShow/hide protein sequence
MHNKFKFQNKASQSFPSTEQFEETSPSLPLGLLAIGTFGNNELRVKTDDEDGVVDKSPADETETEDCSLEDVPRLEEELREILQQSSQLGGEEIDGFDNETEEAVKKKIG
LEIGEWKGCDDEKISNRKSIVKRSVSFLVKKIFVCGSGFTPMPPSPSPNFMDPPQDATMKKVLRMMLHKKIYPKNSSQMVSLKSWQSWSSILYLNAGKSTWVGVHWKEIN
LELGLKRNESFQFSSVTMSWGSWLRPEHIFLTTSLGAYLDRKILLMLFDGRHFIGIMRSFDHHGNIVLQDAFERIIVGNLYCDDRKGLVLARAENAILVGEMDSRFPELP
PDMTTVSLPEILTAQKAEMDSSRLKRSFKKWMEEFLDDF