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Lag0016923 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0016923
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr12:42405691..42412263
RNA-Seq ExpressionLag0016923
SyntenyLag0016923
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily
IPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037436.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]6.1e-2240.97Show/hide
Query:  IAELWNPSEGAWNLHLRRHLRDYEILEWALLSHQLSPFSFRDVADSWTWNLSDKGVFSTGSLTINLASLSSPIN---NDFYSNLWKGPMPKKVKFFIWEL
        I ELW+P+   WNLH RR L D EI  W  L   L   +     ++  W  +DKG ++  S    L S     N    +FY  LWK  +PKK KFF+W L
Subjt:  IAELWNPSEGAWNLHLRRHLRDYEILEWALLSHQLSPFSFRDVADSWTWNLSDKGVFSTGSLTINLASLSSPIN---NDFYSNLWKGPMPKKVKFFIWEL

Query:  SHSCINTTDTIQRRFPGSSLSPSRCSMCGKDGETQIHLFSICAL
         H  INTTD +Q+R P + L PSRC +   D E   H+F  C L
Subjt:  SHSCINTTDTIQRRFPGSSLSPSRCSMCGKDGETQIHLFSICAL

KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]8.8e-2132.89Show/hide
Query:  IAELWNPSEGAWNLHLRRHLRDYEILEWALLSHQL-SPFSFRDVADSWTWNLSDKGVFSTGSLTINLASLS-SPIN--NDFYSNLWKGPMPKKVKFFIWE
        + E WNPS   W+LH+ R LRD+E   W  +   L +P   R       WNL+   +F T S+   +A    SP N   + Y  LWK   PKK KFFIW 
Subjt:  IAELWNPSEGAWNLHLRRHLRDYEILEWALLSHQL-SPFSFRDVADSWTWNLSDKGVFSTGSLTINLASLS-SPIN--NDFYSNLWKGPMPKKVKFFIWE

Query:  LSHSCINTTDTIQRRFPGSSLSPSRCSMCGKDGETQIHLFSICALQGAAVISAELGEYARAASFLEDLIKEKSDDSDIFRLLGEV-KYKLKDYSGSIAAY
        L H CINT D +Q+R P  +LSP+ C MC K  E   HLF  C        S +L   A+A      L+   S  +D+  L+  +    +++  G I   
Subjt:  LSHSCINTTDTIQRRFPGSSLSPSRCSMCGKDGETQIHLFSICALQGAAVISAELGEYARAASFLEDLIKEKSDDSDIFRLLGEV-KYKLKDYSGSIAAY

Query:  KSSTMALETLTIKNSSLWNPSNWLP
         ++T+  +    +N+ ++      P
Subjt:  KSSTMALETLTIKNSSLWNPSNWLP

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.0e-2142.66Show/hide
Query:  IAELWNPSEGAWNLHLRRHLRDYEILEWALLSHQL-SPFSFRDVADSWTWNLSDKGVFSTGSLTINLASLS-SPIN--NDFYSNLWKGPMPKKVKFFIWE
        + +LWNPS   WN+H+ R LRD+E   W  +   L +P   R  +    W L+   +F T S+  +L+  S SP N     Y  LWK   PKK KFFIW 
Subjt:  IAELWNPSEGAWNLHLRRHLRDYEILEWALLSHQL-SPFSFRDVADSWTWNLSDKGVFSTGSLTINLASLS-SPIN--NDFYSNLWKGPMPKKVKFFIWE

Query:  LSHSCINTTDTIQRRFPGSSLSPSRCSMCGKDGETQIHLFSIC
        L H CINT D +Q+R P  +LSP+ C MC K  E   HLF  C
Subjt:  LSHSCINTTDTIQRRFPGSSLSPSRCSMCGKDGETQIHLFSIC

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.0e-2142.66Show/hide
Query:  IAELWNPSEGAWNLHLRRHLRDYEILEWALLSHQL-SPFSFRDVADSWTWNLSDKGVFSTGSLTINLASLS-SPIN--NDFYSNLWKGPMPKKVKFFIWE
        + +LWNPS   WN+H+ R LRD+E   W  +   L +P   R  +    W L+   +F T S+  +L+  S SP N     Y  LWK   PKK KFFIW 
Subjt:  IAELWNPSEGAWNLHLRRHLRDYEILEWALLSHQL-SPFSFRDVADSWTWNLSDKGVFSTGSLTINLASLS-SPIN--NDFYSNLWKGPMPKKVKFFIWE

Query:  LSHSCINTTDTIQRRFPGSSLSPSRCSMCGKDGETQIHLFSIC
        L H CINT D +Q+R P  +LSP+ C MC K  E   HLF  C
Subjt:  LSHSCINTTDTIQRRFPGSSLSPSRCSMCGKDGETQIHLFSIC

TYK00226.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]6.1e-2240.97Show/hide
Query:  IAELWNPSEGAWNLHLRRHLRDYEILEWALLSHQLSPFSFRDVADSWTWNLSDKGVFSTGSLTINLASLSSPIN---NDFYSNLWKGPMPKKVKFFIWEL
        I ELW+P+   WNLH RR L D EI  W  L   L   +     ++  W  +DKG ++  S    L S     N    +FY  LWK  +PKK KFF+W L
Subjt:  IAELWNPSEGAWNLHLRRHLRDYEILEWALLSHQLSPFSFRDVADSWTWNLSDKGVFSTGSLTINLASLSSPIN---NDFYSNLWKGPMPKKVKFFIWEL

Query:  SHSCINTTDTIQRRFPGSSLSPSRCSMCGKDGETQIHLFSICAL
         H  INTTD +Q+R P + L PSRC +   D E   H+F  C L
Subjt:  SHSCINTTDTIQRRFPGSSLSPSRCSMCGKDGETQIHLFSICAL

TrEMBL top hitse value%identityAlignment
A0A5A7T5L3 LINE-1 retrotransposable element ORF2 protein3.0e-2240.97Show/hide
Query:  IAELWNPSEGAWNLHLRRHLRDYEILEWALLSHQLSPFSFRDVADSWTWNLSDKGVFSTGSLTINLASLSSPIN---NDFYSNLWKGPMPKKVKFFIWEL
        I ELW+P+   WNLH RR L D EI  W  L   L   +     ++  W  +DKG ++  S    L S     N    +FY  LWK  +PKK KFF+W L
Subjt:  IAELWNPSEGAWNLHLRRHLRDYEILEWALLSHQLSPFSFRDVADSWTWNLSDKGVFSTGSLTINLASLSSPIN---NDFYSNLWKGPMPKKVKFFIWEL

Query:  SHSCINTTDTIQRRFPGSSLSPSRCSMCGKDGETQIHLFSICAL
         H  INTTD +Q+R P + L PSRC +   D E   H+F  C L
Subjt:  SHSCINTTDTIQRRFPGSSLSPSRCSMCGKDGETQIHLFSICAL

A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein4.3e-2132.89Show/hide
Query:  IAELWNPSEGAWNLHLRRHLRDYEILEWALLSHQL-SPFSFRDVADSWTWNLSDKGVFSTGSLTINLASLS-SPIN--NDFYSNLWKGPMPKKVKFFIWE
        + E WNPS   W+LH+ R LRD+E   W  +   L +P   R       WNL+   +F T S+   +A    SP N   + Y  LWK   PKK KFFIW 
Subjt:  IAELWNPSEGAWNLHLRRHLRDYEILEWALLSHQL-SPFSFRDVADSWTWNLSDKGVFSTGSLTINLASLS-SPIN--NDFYSNLWKGPMPKKVKFFIWE

Query:  LSHSCINTTDTIQRRFPGSSLSPSRCSMCGKDGETQIHLFSICALQGAAVISAELGEYARAASFLEDLIKEKSDDSDIFRLLGEV-KYKLKDYSGSIAAY
        L H CINT D +Q+R P  +LSP+ C MC K  E   HLF  C        S +L   A+A      L+   S  +D+  L+  +    +++  G I   
Subjt:  LSHSCINTTDTIQRRFPGSSLSPSRCSMCGKDGETQIHLFSICALQGAAVISAELGEYARAASFLEDLIKEKSDDSDIFRLLGEV-KYKLKDYSGSIAAY

Query:  KSSTMALETLTIKNSSLWNPSNWLP
         ++T+  +    +N+ ++      P
Subjt:  KSSTMALETLTIKNSSLWNPSNWLP

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein5.0e-2242.66Show/hide
Query:  IAELWNPSEGAWNLHLRRHLRDYEILEWALLSHQL-SPFSFRDVADSWTWNLSDKGVFSTGSLTINLASLS-SPIN--NDFYSNLWKGPMPKKVKFFIWE
        + +LWNPS   WN+H+ R LRD+E   W  +   L +P   R  +    W L+   +F T S+  +L+  S SP N     Y  LWK   PKK KFFIW 
Subjt:  IAELWNPSEGAWNLHLRRHLRDYEILEWALLSHQL-SPFSFRDVADSWTWNLSDKGVFSTGSLTINLASLS-SPIN--NDFYSNLWKGPMPKKVKFFIWE

Query:  LSHSCINTTDTIQRRFPGSSLSPSRCSMCGKDGETQIHLFSIC
        L H CINT D +Q+R P  +LSP+ C MC K  E   HLF  C
Subjt:  LSHSCINTTDTIQRRFPGSSLSPSRCSMCGKDGETQIHLFSIC

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein5.0e-2242.66Show/hide
Query:  IAELWNPSEGAWNLHLRRHLRDYEILEWALLSHQL-SPFSFRDVADSWTWNLSDKGVFSTGSLTINLASLS-SPIN--NDFYSNLWKGPMPKKVKFFIWE
        + +LWNPS   WN+H+ R LRD+E   W  +   L +P   R  +    W L+   +F T S+  +L+  S SP N     Y  LWK   PKK KFFIW 
Subjt:  IAELWNPSEGAWNLHLRRHLRDYEILEWALLSHQL-SPFSFRDVADSWTWNLSDKGVFSTGSLTINLASLS-SPIN--NDFYSNLWKGPMPKKVKFFIWE

Query:  LSHSCINTTDTIQRRFPGSSLSPSRCSMCGKDGETQIHLFSIC
        L H CINT D +Q+R P  +LSP+ C MC K  E   HLF  C
Subjt:  LSHSCINTTDTIQRRFPGSSLSPSRCSMCGKDGETQIHLFSIC

A0A5D3BPP1 LINE-1 retrotransposable element ORF2 protein3.0e-2240.97Show/hide
Query:  IAELWNPSEGAWNLHLRRHLRDYEILEWALLSHQLSPFSFRDVADSWTWNLSDKGVFSTGSLTINLASLSSPIN---NDFYSNLWKGPMPKKVKFFIWEL
        I ELW+P+   WNLH RR L D EI  W  L   L   +     ++  W  +DKG ++  S    L S     N    +FY  LWK  +PKK KFF+W L
Subjt:  IAELWNPSEGAWNLHLRRHLRDYEILEWALLSHQLSPFSFRDVADSWTWNLSDKGVFSTGSLTINLASLSSPIN---NDFYSNLWKGPMPKKVKFFIWEL

Query:  SHSCINTTDTIQRRFPGSSLSPSRCSMCGKDGETQIHLFSICAL
         H  INTTD +Q+R P + L PSRC +   D E   H+F  C L
Subjt:  SHSCINTTDTIQRRFPGSSLSPSRCSMCGKDGETQIHLFSICAL

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657502.1e-0427Show/hide
Query:  DSWTWNLSDKGVFSTGSL--TINLASLSSPINNDFYSNLWKGPMPKKVKFFIWELSHSCINTTDTIQRRFPGSSLSPSRCSMCGKDGETQIHLFSICALQ
        D  +W  S  G FS  S    + +  +  P    F++ LWK  +P++VK F+W + +  + T +   RR   +S   + C +C    E+ +H+   C  Q
Subjt:  DSWTWNLSDKGVFSTGSL--TINLASLSSPINNDFYSNLWKGPMPKKVKFFIWELSHSCINTTDTIQRRFPGSSLSPSRCSMCGKDGETQIHLFSICALQ

Arabidopsis top hitse value%identityAlignment
AT1G78915.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.2e-1466.1Show/hide
Query:  ALQGAAVISAELGEYARAASFLEDLIKEKSDDSDIFRLLGEVKYKLKDYSGSIAAYKSS
        AL+GAAV   ELG+Y+RAA+FLE L KE+  D D+FRLLGEV Y+L +Y GSIAAYK S
Subjt:  ALQGAAVISAELGEYARAASFLEDLIKEKSDDSDIFRLLGEVKYKLKDYSGSIAAYKSS

AT1G78915.2 Tetratricopeptide repeat (TPR)-like superfamily protein2.2e-1466.1Show/hide
Query:  ALQGAAVISAELGEYARAASFLEDLIKEKSDDSDIFRLLGEVKYKLKDYSGSIAAYKSS
        AL+GAAV   ELG+Y+RAA+FLE L KE+  D D+FRLLGEV Y+L +Y GSIAAYK S
Subjt:  ALQGAAVISAELGEYARAASFLEDLIKEKSDDSDIFRLLGEVKYKLKDYSGSIAAYKSS

AT1G78915.3 Tetratricopeptide repeat (TPR)-like superfamily protein2.2e-1466.1Show/hide
Query:  ALQGAAVISAELGEYARAASFLEDLIKEKSDDSDIFRLLGEVKYKLKDYSGSIAAYKSS
        AL+GAAV   ELG+Y+RAA+FLE L KE+  D D+FRLLGEV Y+L +Y GSIAAYK S
Subjt:  ALQGAAVISAELGEYARAASFLEDLIKEKSDDSDIFRLLGEVKYKLKDYSGSIAAYKSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGCTGAATTATGGAACCCATCTGAGGGGGCATGGAACTTACATCTTAGAAGGCATCTTCGGGACTATGAAATTCTGGAATGGGCTTTATTATCACACCAGCTATC
ACCATTTTCCTTTAGAGATGTGGCTGACTCATGGACATGGAATCTTAGTGATAAAGGTGTCTTCTCCACAGGATCCCTTACCATAAATTTGGCTTCTCTTTCTTCACCCA
TAAACAATGACTTCTACAGCAATCTATGGAAGGGACCTATGCCAAAAAAAGTCAAGTTCTTTATATGGGAACTCAGCCACTCTTGTATAAATACAACAGACACTATTCAG
AGGAGATTTCCAGGATCATCGCTCTCCCCCAGCCGCTGCAGCATGTGTGGTAAGGATGGTGAAACACAAATCCATCTTTTCAGCATCTGTGCATTGCAGGGTGCGGCTGT
TATCTCAGCTGAATTAGGTGAATATGCTCGAGCAGCCTCTTTTCTTGAAGACTTGATAAAGGAGAAGTCAGATGATTCTGACATTTTCCGCTTGCTTGGGGAGGTCAAGT
ATAAACTTAAAGATTATAGTGGGAGTATTGCGGCATACAAGAGTTCCACAATGGCATTGGAAACCCTCACTATCAAAAACTCTAGCCTTTGGAATCCTAGCAACTGGTTA
CCATCATCATCGCCACAGTCTCCTTCTGATGCGTCTCGTGGGTTTCAAGTCATTCACAGTCCTGGGTTTCAAGTTGTGGGTAGCAGTCGTTTGTCTTCCAATGTTGCAAA
TCTTCACAGTGGTCTTGTTCGTTGTTTGTTGTCACGTGGTTGTTGTTCGTGCTTCCTTCGACATTTTCCAACGGCGTTCGATCGTGGTTTGTTTATCACTCAAGTCGTCG
CACTGCCTACTGCCAACGTCGGCCACACTGGTGGAGCTGAGAACCACTTTGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGATTGCTGAATTATGGAACCCATCTGAGGGGGCATGGAACTTACATCTTAGAAGGCATCTTCGGGACTATGAAATTCTGGAATGGGCTTTATTATCACACCAGCTATC
ACCATTTTCCTTTAGAGATGTGGCTGACTCATGGACATGGAATCTTAGTGATAAAGGTGTCTTCTCCACAGGATCCCTTACCATAAATTTGGCTTCTCTTTCTTCACCCA
TAAACAATGACTTCTACAGCAATCTATGGAAGGGACCTATGCCAAAAAAAGTCAAGTTCTTTATATGGGAACTCAGCCACTCTTGTATAAATACAACAGACACTATTCAG
AGGAGATTTCCAGGATCATCGCTCTCCCCCAGCCGCTGCAGCATGTGTGGTAAGGATGGTGAAACACAAATCCATCTTTTCAGCATCTGTGCATTGCAGGGTGCGGCTGT
TATCTCAGCTGAATTAGGTGAATATGCTCGAGCAGCCTCTTTTCTTGAAGACTTGATAAAGGAGAAGTCAGATGATTCTGACATTTTCCGCTTGCTTGGGGAGGTCAAGT
ATAAACTTAAAGATTATAGTGGGAGTATTGCGGCATACAAGAGTTCCACAATGGCATTGGAAACCCTCACTATCAAAAACTCTAGCCTTTGGAATCCTAGCAACTGGTTA
CCATCATCATCGCCACAGTCTCCTTCTGATGCGTCTCGTGGGTTTCAAGTCATTCACAGTCCTGGGTTTCAAGTTGTGGGTAGCAGTCGTTTGTCTTCCAATGTTGCAAA
TCTTCACAGTGGTCTTGTTCGTTGTTTGTTGTCACGTGGTTGTTGTTCGTGCTTCCTTCGACATTTTCCAACGGCGTTCGATCGTGGTTTGTTTATCACTCAAGTCGTCG
CACTGCCTACTGCCAACGTCGGCCACACTGGTGGAGCTGAGAACCACTTTGAATAA
Protein sequenceShow/hide protein sequence
MIAELWNPSEGAWNLHLRRHLRDYEILEWALLSHQLSPFSFRDVADSWTWNLSDKGVFSTGSLTINLASLSSPINNDFYSNLWKGPMPKKVKFFIWELSHSCINTTDTIQ
RRFPGSSLSPSRCSMCGKDGETQIHLFSICALQGAAVISAELGEYARAASFLEDLIKEKSDDSDIFRLLGEVKYKLKDYSGSIAAYKSSTMALETLTIKNSSLWNPSNWL
PSSSPQSPSDASRGFQVIHSPGFQVVGSSRLSSNVANLHSGLVRCLLSRGCCSCFLRHFPTAFDRGLFITQVVALPTANVGHTGGAENHFE