; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0016924 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0016924
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr12:42412554..42413408
RNA-Seq ExpressionLag0016924
SyntenyLag0016924
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN70431.1 hypothetical protein VITISV_030910 [Vitis vinifera]5.5e-7848.76Show/hide
Query:  VDWDYLDTILEAKGFGHKWRIWIKGCISSANYSIIINGKPRGRIIASRGLRQGDPLSPFLFILVADSLSRMLIEADKNGSIEGFQMGHGQQATHISHLQF
        VDW +LD +L+ KGF  KWR+WI+GC+ S++++I++NG  +G + ASRGLRQGDPLSPFLF LVAD LSRML  A++ G  EGF +  G+  T +S LQF
Subjt:  VDWDYLDTILEAKGFGHKWRIWIKGCISSANYSIIINGKPRGRIIASRGLRQGDPLSPFLFILVADSLSRMLIEADKNGSIEGFQMGHGQQATHISHLQF

Query:  ADDTILFSSCNQSHLSSLFKVIQDFEMASGLRINRQKTELLGLGIDTHLASQLASTFGCKQSTWPTTYLGFPLNGNPRRTSFWTPVIEKVQKRLNNWGSS
        ADDTI FS  +  HL +L  ++  F   SGL+IN +K+ + G+     L S LAS F C+ S WP +YLG PL GNP+   FW PV+E++ +RL+ W  +
Subjt:  ADDTILFSSCNQSHLSSLFKVIQDFEMASGLRINRQKTELLGLGIDTHLASQLASTFGCKQSTWPTTYLGFPLNGNPRRTSFWTPVIEKVQKRLNNWGSS

Query:  NISKGGRHTLMQATLSNLPIYYLSLFQAPKKITKSMEKLYRMFLWRGGPEKKGCHLLKWSYIQLPIEEGGLGLYDIHKKNVSL
         +S GGR TL+Q+ LS++P Y+LSLF+ P  +   +EK+ R FLW G  E K  HL++W  +  P E GGLG   I  +N++L
Subjt:  NISKGGRHTLMQATLSNLPIYYLSLFQAPKKITKSMEKLYRMFLWRGGPEKKGCHLLKWSYIQLPIEEGGLGLYDIHKKNVSL

CAN75040.1 hypothetical protein VITISV_026478 [Vitis vinifera]1.1e-7849.47Show/hide
Query:  VDWDYLDTILEAKGFGHKWRIWIKGCISSANYSIIINGKPRGRIIASRGLRQGDPLSPFLFILVADSLSRMLIEADKNGSIEGFQMGHGQQATHISHLQF
        VDW +LD +L+ KGF  KWR+WI+GC+SS++++I++NG  +G + ASRGLRQGDPLSPFLF LVAD LSRML  A++ G  EGF +  G+  T +S LQF
Subjt:  VDWDYLDTILEAKGFGHKWRIWIKGCISSANYSIIINGKPRGRIIASRGLRQGDPLSPFLFILVADSLSRMLIEADKNGSIEGFQMGHGQQATHISHLQF

Query:  ADDTILFSSCNQSHLSSLFKVIQDFEMASGLRINRQKTELLGLGIDTHLASQLASTFGCKQSTWPTTYLGFPLNGNPRRTSFWTPVIEKVQKRLNNWGSS
        ADDTI FS  +  HL +L  ++  F   SGL+IN +K+ + G+     L S LAS F C+ S WP +YLG PL GNP+   FW PV+E++ +RL+ W  +
Subjt:  ADDTILFSSCNQSHLSSLFKVIQDFEMASGLRINRQKTELLGLGIDTHLASQLASTFGCKQSTWPTTYLGFPLNGNPRRTSFWTPVIEKVQKRLNNWGSS

Query:  NISKGGRHTLMQATLSNLPIYYLSLFQAPKKITKSMEKLYRMFLWRGGPEKKGCHLLKWSYIQLPIEEGGLGLYDIHKKNVSL
         +S GGR TL+Q+ LS++P Y+LSLF+ P  I   +EK+ R FLW G  E K  HL++W  +  P E GGLG   I  +N++L
Subjt:  NISKGGRHTLMQATLSNLPIYYLSLFQAPKKITKSMEKLYRMFLWRGGPEKKGCHLLKWSYIQLPIEEGGLGLYDIHKKNVSL

RVW39368.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]1.4e-7849.47Show/hide
Query:  VDWDYLDTILEAKGFGHKWRIWIKGCISSANYSIIINGKPRGRIIASRGLRQGDPLSPFLFILVADSLSRMLIEADKNGSIEGFQMGHGQQATHISHLQF
        VDW +LD +L+ KGF  KWR WI+GC+SS++++I++NG  +G + ASRGLRQGDPLSPFLF LVAD LSRML  A++ G  EGF +  G+  T +S LQF
Subjt:  VDWDYLDTILEAKGFGHKWRIWIKGCISSANYSIIINGKPRGRIIASRGLRQGDPLSPFLFILVADSLSRMLIEADKNGSIEGFQMGHGQQATHISHLQF

Query:  ADDTILFSSCNQSHLSSLFKVIQDFEMASGLRINRQKTELLGLGIDTHLASQLASTFGCKQSTWPTTYLGFPLNGNPRRTSFWTPVIEKVQKRLNNWGSS
        ADDTI FS  +  HL +L  ++  F   SGL+IN +K+ + G+     L S LAS F C+ S WP +YLG PL GNP+   FW PV+E++ +RL+ W  +
Subjt:  ADDTILFSSCNQSHLSSLFKVIQDFEMASGLRINRQKTELLGLGIDTHLASQLASTFGCKQSTWPTTYLGFPLNGNPRRTSFWTPVIEKVQKRLNNWGSS

Query:  NISKGGRHTLMQATLSNLPIYYLSLFQAPKKITKSMEKLYRMFLWRGGPEKKGCHLLKWSYIQLPIEEGGLGLYDIHKKNVSL
         +S GGR TL+Q+ LS++P Y+LSLF+ P  I   +EK+ R FLW G  E K  HL++W  +  P E GGLG   I  +N++L
Subjt:  NISKGGRHTLMQATLSNLPIYYLSLFQAPKKITKSMEKLYRMFLWRGGPEKKGCHLLKWSYIQLPIEEGGLGLYDIHKKNVSL

RVW64408.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]1.1e-7849.47Show/hide
Query:  VDWDYLDTILEAKGFGHKWRIWIKGCISSANYSIIINGKPRGRIIASRGLRQGDPLSPFLFILVADSLSRMLIEADKNGSIEGFQMGHGQQATHISHLQF
        VDW +LD +L+ KGF  KWR+WI+GC+SS++++I++NG  +G + ASRGLRQGDPLSPFLF LVAD LSRML  A++ G  EGF +  G+  T +S LQF
Subjt:  VDWDYLDTILEAKGFGHKWRIWIKGCISSANYSIIINGKPRGRIIASRGLRQGDPLSPFLFILVADSLSRMLIEADKNGSIEGFQMGHGQQATHISHLQF

Query:  ADDTILFSSCNQSHLSSLFKVIQDFEMASGLRINRQKTELLGLGIDTHLASQLASTFGCKQSTWPTTYLGFPLNGNPRRTSFWTPVIEKVQKRLNNWGSS
        ADDTI FS  +  HL +L  ++  F   SGL+IN +K+ + G+     L S LAS F C+ S WP +YLG PL GNP+   FW PV+E++ +RL+ W  +
Subjt:  ADDTILFSSCNQSHLSSLFKVIQDFEMASGLRINRQKTELLGLGIDTHLASQLASTFGCKQSTWPTTYLGFPLNGNPRRTSFWTPVIEKVQKRLNNWGSS

Query:  NISKGGRHTLMQATLSNLPIYYLSLFQAPKKITKSMEKLYRMFLWRGGPEKKGCHLLKWSYIQLPIEEGGLGLYDIHKKNVSL
         +S GGR TL+Q+ LS++P Y+LSLF+ P  I   +EK+ R FLW G  E K  HL++W  +  P E GGLG   I  +N++L
Subjt:  NISKGGRHTLMQATLSNLPIYYLSLFQAPKKITKSMEKLYRMFLWRGGPEKKGCHLLKWSYIQLPIEEGGLGLYDIHKKNVSL

RVW77187.1 putative ribonuclease H protein [Vitis vinifera]4.2e-7849.47Show/hide
Query:  VDWDYLDTILEAKGFGHKWRIWIKGCISSANYSIIINGKPRGRIIASRGLRQGDPLSPFLFILVADSLSRMLIEADKNGSIEGFQMGHGQQATHISHLQF
        V WD+LD +LE KGF  KWR W+ GC+SS +Y++++NG  +G + ASRGLRQGDPLSPFLF LVAD LSRML+ A++   +EGF++G  +  T +SHLQF
Subjt:  VDWDYLDTILEAKGFGHKWRIWIKGCISSANYSIIINGKPRGRIIASRGLRQGDPLSPFLFILVADSLSRMLIEADKNGSIEGFQMGHGQQATHISHLQF

Query:  ADDTILFSSCNQSHLSSLFKVIQDFEMASGLRINRQKTELLGLGIDTHLASQLASTFGCKQSTWPTTYLGFPLNGNPRRTSFWTPVIEKVQKRLNNWGSS
        ADDTI FS+  +  L +L  ++  F   SGL++N  K+ + G+ +D    S+LA T GCK S WP  YLG PL GNPR   FW PVIE++ +RL+ W  +
Subjt:  ADDTILFSSCNQSHLSSLFKVIQDFEMASGLRINRQKTELLGLGIDTHLASQLASTFGCKQSTWPTTYLGFPLNGNPRRTSFWTPVIEKVQKRLNNWGSS

Query:  NISKGGRHTLMQATLSNLPIYYLSLFQAPKKITKSMEKLYRMFLWRGGPEKKGCHLLKWSYIQLPIEEGGLGLYDIHKKNVSL
         +S GGR TL+Q+ L+++P YYLSLF+ P  +   +E+L R FLW G  E K  HL++W  +  P E GGLG  +I  +N++L
Subjt:  NISKGGRHTLMQATLSNLPIYYLSLFQAPKKITKSMEKLYRMFLWRGGPEKKGCHLLKWSYIQLPIEEGGLGLYDIHKKNVSL

TrEMBL top hitse value%identityAlignment
A0A438DVQ8 LINE-1 retrotransposable element ORF2 protein7.0e-7949.47Show/hide
Query:  VDWDYLDTILEAKGFGHKWRIWIKGCISSANYSIIINGKPRGRIIASRGLRQGDPLSPFLFILVADSLSRMLIEADKNGSIEGFQMGHGQQATHISHLQF
        VDW +LD +L+ KGF  KWR WI+GC+SS++++I++NG  +G + ASRGLRQGDPLSPFLF LVAD LSRML  A++ G  EGF +  G+  T +S LQF
Subjt:  VDWDYLDTILEAKGFGHKWRIWIKGCISSANYSIIINGKPRGRIIASRGLRQGDPLSPFLFILVADSLSRMLIEADKNGSIEGFQMGHGQQATHISHLQF

Query:  ADDTILFSSCNQSHLSSLFKVIQDFEMASGLRINRQKTELLGLGIDTHLASQLASTFGCKQSTWPTTYLGFPLNGNPRRTSFWTPVIEKVQKRLNNWGSS
        ADDTI FS  +  HL +L  ++  F   SGL+IN +K+ + G+     L S LAS F C+ S WP +YLG PL GNP+   FW PV+E++ +RL+ W  +
Subjt:  ADDTILFSSCNQSHLSSLFKVIQDFEMASGLRINRQKTELLGLGIDTHLASQLASTFGCKQSTWPTTYLGFPLNGNPRRTSFWTPVIEKVQKRLNNWGSS

Query:  NISKGGRHTLMQATLSNLPIYYLSLFQAPKKITKSMEKLYRMFLWRGGPEKKGCHLLKWSYIQLPIEEGGLGLYDIHKKNVSL
         +S GGR TL+Q+ LS++P Y+LSLF+ P  I   +EK+ R FLW G  E K  HL++W  +  P E GGLG   I  +N++L
Subjt:  NISKGGRHTLMQATLSNLPIYYLSLFQAPKKITKSMEKLYRMFLWRGGPEKKGCHLLKWSYIQLPIEEGGLGLYDIHKKNVSL

A0A438FWU5 LINE-1 retrotransposable element ORF2 protein5.4e-7949.47Show/hide
Query:  VDWDYLDTILEAKGFGHKWRIWIKGCISSANYSIIINGKPRGRIIASRGLRQGDPLSPFLFILVADSLSRMLIEADKNGSIEGFQMGHGQQATHISHLQF
        VDW +LD +L+ KGF  KWR+WI+GC+SS++++I++NG  +G + ASRGLRQGDPLSPFLF LVAD LSRML  A++ G  EGF +  G+  T +S LQF
Subjt:  VDWDYLDTILEAKGFGHKWRIWIKGCISSANYSIIINGKPRGRIIASRGLRQGDPLSPFLFILVADSLSRMLIEADKNGSIEGFQMGHGQQATHISHLQF

Query:  ADDTILFSSCNQSHLSSLFKVIQDFEMASGLRINRQKTELLGLGIDTHLASQLASTFGCKQSTWPTTYLGFPLNGNPRRTSFWTPVIEKVQKRLNNWGSS
        ADDTI FS  +  HL +L  ++  F   SGL+IN +K+ + G+     L S LAS F C+ S WP +YLG PL GNP+   FW PV+E++ +RL+ W  +
Subjt:  ADDTILFSSCNQSHLSSLFKVIQDFEMASGLRINRQKTELLGLGIDTHLASQLASTFGCKQSTWPTTYLGFPLNGNPRRTSFWTPVIEKVQKRLNNWGSS

Query:  NISKGGRHTLMQATLSNLPIYYLSLFQAPKKITKSMEKLYRMFLWRGGPEKKGCHLLKWSYIQLPIEEGGLGLYDIHKKNVSL
         +S GGR TL+Q+ LS++P Y+LSLF+ P  I   +EK+ R FLW G  E K  HL++W  +  P E GGLG   I  +N++L
Subjt:  NISKGGRHTLMQATLSNLPIYYLSLFQAPKKITKSMEKLYRMFLWRGGPEKKGCHLLKWSYIQLPIEEGGLGLYDIHKKNVSL

A0A438GYB4 Putative ribonuclease H protein2.0e-7849.47Show/hide
Query:  VDWDYLDTILEAKGFGHKWRIWIKGCISSANYSIIINGKPRGRIIASRGLRQGDPLSPFLFILVADSLSRMLIEADKNGSIEGFQMGHGQQATHISHLQF
        V WD+LD +LE KGF  KWR W+ GC+SS +Y++++NG  +G + ASRGLRQGDPLSPFLF LVAD LSRML+ A++   +EGF++G  +  T +SHLQF
Subjt:  VDWDYLDTILEAKGFGHKWRIWIKGCISSANYSIIINGKPRGRIIASRGLRQGDPLSPFLFILVADSLSRMLIEADKNGSIEGFQMGHGQQATHISHLQF

Query:  ADDTILFSSCNQSHLSSLFKVIQDFEMASGLRINRQKTELLGLGIDTHLASQLASTFGCKQSTWPTTYLGFPLNGNPRRTSFWTPVIEKVQKRLNNWGSS
        ADDTI FS+  +  L +L  ++  F   SGL++N  K+ + G+ +D    S+LA T GCK S WP  YLG PL GNPR   FW PVIE++ +RL+ W  +
Subjt:  ADDTILFSSCNQSHLSSLFKVIQDFEMASGLRINRQKTELLGLGIDTHLASQLASTFGCKQSTWPTTYLGFPLNGNPRRTSFWTPVIEKVQKRLNNWGSS

Query:  NISKGGRHTLMQATLSNLPIYYLSLFQAPKKITKSMEKLYRMFLWRGGPEKKGCHLLKWSYIQLPIEEGGLGLYDIHKKNVSL
         +S GGR TL+Q+ L+++P YYLSLF+ P  +   +E+L R FLW G  E K  HL++W  +  P E GGLG  +I  +N++L
Subjt:  NISKGGRHTLMQATLSNLPIYYLSLFQAPKKITKSMEKLYRMFLWRGGPEKKGCHLLKWSYIQLPIEEGGLGLYDIHKKNVSL

A0A803P465 Uncharacterized protein2.4e-7950.88Show/hide
Query:  VDWDYLDTILEAKGFGHKWRIWIKGCISSANYSIIINGKPRGRIIASRGLRQGDPLSPFLFILVADSLSRMLIEADKNGSIEGFQMGHGQQATHISHLQF
        V+W+++D +L  KGFG  WR WIKGCISS ++S+ IN  PRG+   SRGLRQGDPLSPFLF LVAD L RM  +A   G+I GF +  G++   +SHLQF
Subjt:  VDWDYLDTILEAKGFGHKWRIWIKGCISSANYSIIINGKPRGRIIASRGLRQGDPLSPFLFILVADSLSRMLIEADKNGSIEGFQMGHGQQATHISHLQF

Query:  ADDTILFSSCNQSHLSSLFKVIQDFEMASGLRINRQKTELLGLGIDTHLASQLASTFGCKQSTWPTTYLGFPLNGNPRRTSFWTPVIEKVQKRLNNWGSS
        ADDTI F   N+  L  L +V++ F   SGL+IN  K++LLG+ +D  + S+LA   GC+  +WP  YLG PL G+PR+ SFW PV++K  KRL+ W  +
Subjt:  ADDTILFSSCNQSHLSSLFKVIQDFEMASGLRINRQKTELLGLGIDTHLASQLASTFGCKQSTWPTTYLGFPLNGNPRRTSFWTPVIEKVQKRLNNWGSS

Query:  NISKGGRHTLMQATLSNLPIYYLSLFQAPKKITKSMEKLYRMFLWRGGPEKKGCHLLKWSYIQLPIEEGGLGLYDIHKKNVSL
         +SKGGR TL+Q+ LS+LP+Y+LSLF+AP+ +TK++EK+ R FLW G     G HL+ W  +  P  EGGLG+  +  +N SL
Subjt:  NISKGGRHTLMQATLSNLPIYYLSLFQAPKKITKSMEKLYRMFLWRGGPEKKGCHLLKWSYIQLPIEEGGLGLYDIHKKNVSL

A5BV95 Reverse transcriptase domain-containing protein5.4e-7949.47Show/hide
Query:  VDWDYLDTILEAKGFGHKWRIWIKGCISSANYSIIINGKPRGRIIASRGLRQGDPLSPFLFILVADSLSRMLIEADKNGSIEGFQMGHGQQATHISHLQF
        VDW +LD +L+ KGF  KWR+WI+GC+SS++++I++NG  +G + ASRGLRQGDPLSPFLF LVAD LSRML  A++ G  EGF +  G+  T +S LQF
Subjt:  VDWDYLDTILEAKGFGHKWRIWIKGCISSANYSIIINGKPRGRIIASRGLRQGDPLSPFLFILVADSLSRMLIEADKNGSIEGFQMGHGQQATHISHLQF

Query:  ADDTILFSSCNQSHLSSLFKVIQDFEMASGLRINRQKTELLGLGIDTHLASQLASTFGCKQSTWPTTYLGFPLNGNPRRTSFWTPVIEKVQKRLNNWGSS
        ADDTI FS  +  HL +L  ++  F   SGL+IN +K+ + G+     L S LAS F C+ S WP +YLG PL GNP+   FW PV+E++ +RL+ W  +
Subjt:  ADDTILFSSCNQSHLSSLFKVIQDFEMASGLRINRQKTELLGLGIDTHLASQLASTFGCKQSTWPTTYLGFPLNGNPRRTSFWTPVIEKVQKRLNNWGSS

Query:  NISKGGRHTLMQATLSNLPIYYLSLFQAPKKITKSMEKLYRMFLWRGGPEKKGCHLLKWSYIQLPIEEGGLGLYDIHKKNVSL
         +S GGR TL+Q+ LS++P Y+LSLF+ P  I   +EK+ R FLW G  E K  HL++W  +  P E GGLG   I  +N++L
Subjt:  NISKGGRHTLMQATLSNLPIYYLSLFQAPKKITKSMEKLYRMFLWRGGPEKKGCHLLKWSYIQLPIEEGGLGLYDIHKKNVSL

SwissProt top hitse value%identityAlignment
O00370 LINE-1 retrotransposable element ORF2 protein1.4e-1224.51Show/hide
Query:  IKGCISSANYSIIINGKPRGRIIASRGLRQGDPLSPFLFILVADSLSRMLIEADKNGSIEGFQMGHGQQATHISHLQFADDTILFSSCNQSHLSSLFKVI
        I+        +II+NG+         G RQG PLSP LF +V + L+R + +  +   I+G Q+G  +    +    FADD I++         +L K+I
Subjt:  IKGCISSANYSIIINGKPRGRIIASRGLRQGDPLSPFLFILVADSLSRMLIEADKNGSIEGFQMGHGQQATHISHLQFADDTILFSSCNQSHLSSLFKVI

Query:  QDFEMASGLRINRQKTELLGLGIDTHLASQLASTFGCKQSTWPTTYLGFPLNGNPRR--TSFWTPVIEKVQKRLNNWGSSNISKGGRHTLMQATLSNLPI
         +F   SG +IN QK++      +    SQ+        ++    YLG  L  + +      + P+++++++  N W +   S  GR  +++  +    I
Subjt:  QDFEMASGLRINRQKTELLGLGIDTHLASQLASTFGCKQSTWPTTYLGFPLNGNPRR--TSFWTPVIEKVQKRLNNWGSSNISKGGRHTLMQATLSNLPI

Query:  YYLSL--FQAPKKITKSMEKLYRMFLWRGGPEKKGCHLLKWSYIQLPIEEGGLGLYD
        Y  +    + P      +EK    F+W     +K   + K S +    + GG+ L D
Subjt:  YYLSL--FQAPKKITKSMEKLYRMFLWRGGPEKKGCHLLKWSYIQLPIEEGGLGLYD

P08548 LINE-1 reverse transcriptase homolog9.6e-0923.79Show/hide
Query:  IKGCISSANYSIIINGKPRGRIIASRGLRQGDPLSPFLFILVADSLSRMLIEADKNGSIEGFQMGHGQQATHISHLQFADDTILFSSCNQSHLSSLFKVI
        I+   S    +II+NG          G RQG PLSP LF +V + L+   I   +  +I+G  +G    +  I    FADD I++    +   + L +VI
Subjt:  IKGCISSANYSIIINGKPRGRIIASRGLRQGDPLSPFLFILVADSLSRMLIEADKNGSIEGFQMGHGQQATHISHLQFADDTILFSSCNQSHLSSLFKVI

Query:  QDFEMASGLRINRQKTELLGLGIDTHLASQLASTFGCKQSTWPTTYLGFPLNGNPR--RTSFWTPVIEKVQKRLNNWGSSNISKGGRHTLMQATLSNLPI
        +++   SG +IN  K+       +      +  +           YLG  L  + +      +  + +++ + +N W +   S  GR  +++ ++    I
Subjt:  QDFEMASGLRINRQKTELLGLGIDTHLASQLASTFGCKQSTWPTTYLGFPLNGNPR--RTSFWTPVIEKVQKRLNNWGSSNISKGGRHTLMQATLSNLPI

Query:  YYLSL--FQAPKKITKSMEKLYRMFLW
        Y  +    +AP    K +EK+   F+W
Subjt:  YYLSL--FQAPKKITKSMEKLYRMFLW

P0C2F6 Putative ribonuclease H protein At1g657503.4e-1437.76Show/hide
Query:  VIEKVQKRLNNWGSSNISKGGRHTLMQATLSNLPIYYLSLFQAPKKITKSMEKLYRMFLWRGGPEKKGCHLLKWSYIQLPIEEGGLGLYDIHKKNVSL
        ++E+V  R++ W    +S  GR TL +A LS++P++ +S    P+ I   +++L R FLW    EKK  HL+KWS +  P +EGGLG+      N +L
Subjt:  VIEKVQKRLNNWGSSNISKGGRHTLMQATLSNLPIYYLSLFQAPKKITKSMEKLYRMFLWRGGPEKKGCHLLKWSYIQLPIEEGGLGLYDIHKKNVSL

P11369 LINE-1 retrotransposable element ORF2 protein1.5e-0924.03Show/hide
Query:  YLDTILEAKGFGHKWRIWIKGCISSANYSIIINGKPRGRIIASRGLRQGDPLSPFLFILVADSLSRMLIEADKNGSIEGFQMGHGQQATHISHLQFADDT
        ++  +LE  G    +   IK   S    +I +NG+    I    G RQG PLSP+LF +V + L+R + +  +   I+G Q+  G++   IS L  ADD 
Subjt:  YLDTILEAKGFGHKWRIWIKGCISSANYSIIINGKPRGRIIASRGLRQGDPLSPFLFILVADSLSRMLIEADKNGSIEGFQMGHGQQATHISHLQFADDT

Query:  ILFSSCNQSHLSSLFKVIQDFEMASGLRINRQKTELLGLGIDTHLASQLASTFGCKQSTWPTTYLGFPLNGNPR--RTSFWTPVIEKVQKRLNNWGSSNI
        I++ S  ++    L  +I  F    G +IN  K+       +     ++  T      T    YLG  L    +      +  + +++++ L  W     
Subjt:  ILFSSCNQSHLSSLFKVIQDFEMASGLRINRQKTELLGLGIDTHLASQLASTFGCKQSTWPTTYLGFPLNGNPR--RTSFWTPVIEKVQKRLNNWGSSNI

Query:  SKGGRHTLMQATLSNLPIYYLSL--FQAPKKITKSMEKLYRMFLWRGGPEKKGCHLLK
        S  GR  +++  +    IY  +    + P +    +E     F+W     +    LLK
Subjt:  SKGGRHTLMQATLSNLPIYYLSL--FQAPKKITKSMEKLYRMFLWRGGPEKKGCHLLK

P92555 Uncharacterized mitochondrial protein AtMg012502.1e-1150Show/hide
Query:  IINGKPRGRIIASRGLRQGDPLSPFLFILVADSLSRMLIEADKNGSIEGFQMGHGQQATHISHLQFADDT
        IING P+G +  SRGLRQGDPLSP+LFIL  + LS +   A + G + G ++ +   +  I+HL FADDT
Subjt:  IINGKPRGRIIASRGLRQGDPLSPFLFILVADSLSRMLIEADKNGSIEGFQMGHGQQATHISHLQFADDT

Arabidopsis top hitse value%identityAlignment
AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein3.5e-1427.01Show/hide
Query:  GIDTHLASQLASTFGCKQSTWPTTYLGFPLNGNPRRTSFWTPVIEKVQKRLNNWGSSNISKGGRHTLMQATLSNLPIYYLSLFQAPKKITKSMEKLYRMF
        G+  +  + +  +F       P  YLG PL      TS + P++EK++ R+  W + ++S  GR  L+ + + +L  +++S F+ P    K ++ +   F
Subjt:  GIDTHLASQLASTFGCKQSTWPTTYLGFPLNGNPRRTSFWTPVIEKVQKRLNNWGSSNISKGGRHTLMQATLSNLPIYYLSLFQAPKKITKSMEKLYRMF

Query:  LWRGGPEKKGCHLLKWSYIQLPIEEGGLGLYDIHKKN
        LW G         + WS +  P +EGGLG+  + + N
Subjt:  LWRGGPEKKGCHLLKWSYIQLPIEEGGLGLYDIHKKN

ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase)1.5e-1250Show/hide
Query:  IINGKPRGRIIASRGLRQGDPLSPFLFILVADSLSRMLIEADKNGSIEGFQMGHGQQATHISHLQFADDT
        IING P+G +  SRGLRQGDPLSP+LFIL  + LS +   A + G + G ++ +   +  I+HL FADDT
Subjt:  IINGKPRGRIIASRGLRQGDPLSPFLFILVADSLSRMLIEADKNGSIEGFQMGHGQQATHISHLQFADDT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGATTGGGACTACCTTGATACCATCTTAGAAGCTAAAGGATTTGGCCATAAATGGAGAATATGGATTAAAGGTTGCATATCATCGGCAAACTACTCGATTATTAT
CAATGGAAAACCGCGAGGTAGGATTATTGCTTCTAGAGGCCTTAGGCAAGGGGATCCCCTCTCCCCTTTCCTATTTATATTGGTGGCGGATAGTCTGAGCAGAATGCTTA
TAGAGGCTGATAAGAATGGCTCCATTGAAGGCTTCCAGATGGGACATGGACAGCAGGCCACACATATCTCCCACCTACAGTTCGCGGATGACACCATTCTCTTTTCCTCT
TGTAATCAGTCGCATCTATCAAGCCTTTTCAAGGTTATCCAAGACTTTGAAATGGCATCGGGCTTAAGGATTAATCGCCAAAAGACAGAACTATTGGGGCTTGGTATTGA
CACTCATTTGGCATCTCAATTGGCCTCCACCTTCGGTTGTAAACAGAGTACTTGGCCGACCACTTATCTGGGTTTTCCTCTAAACGGCAATCCTAGAAGAACTAGTTTCT
GGACACCTGTGATTGAAAAGGTCCAAAAGAGACTTAATAACTGGGGATCTTCCAACATTTCAAAAGGAGGCCGCCACACTCTCATGCAAGCAACCCTTTCTAATCTCCCC
ATTTATTATCTATCTTTGTTTCAAGCTCCCAAGAAGATCACCAAATCCATGGAGAAGTTGTATAGAATGTTCCTTTGGCGCGGTGGCCCCGAGAAGAAGGGTTGTCATCT
TCTGAAATGGTCCTATATCCAATTGCCCATCGAGGAGGGAGGATTGGGCCTCTACGATATTCATAAGAAAAACGTTTCTCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGATTGGGACTACCTTGATACCATCTTAGAAGCTAAAGGATTTGGCCATAAATGGAGAATATGGATTAAAGGTTGCATATCATCGGCAAACTACTCGATTATTAT
CAATGGAAAACCGCGAGGTAGGATTATTGCTTCTAGAGGCCTTAGGCAAGGGGATCCCCTCTCCCCTTTCCTATTTATATTGGTGGCGGATAGTCTGAGCAGAATGCTTA
TAGAGGCTGATAAGAATGGCTCCATTGAAGGCTTCCAGATGGGACATGGACAGCAGGCCACACATATCTCCCACCTACAGTTCGCGGATGACACCATTCTCTTTTCCTCT
TGTAATCAGTCGCATCTATCAAGCCTTTTCAAGGTTATCCAAGACTTTGAAATGGCATCGGGCTTAAGGATTAATCGCCAAAAGACAGAACTATTGGGGCTTGGTATTGA
CACTCATTTGGCATCTCAATTGGCCTCCACCTTCGGTTGTAAACAGAGTACTTGGCCGACCACTTATCTGGGTTTTCCTCTAAACGGCAATCCTAGAAGAACTAGTTTCT
GGACACCTGTGATTGAAAAGGTCCAAAAGAGACTTAATAACTGGGGATCTTCCAACATTTCAAAAGGAGGCCGCCACACTCTCATGCAAGCAACCCTTTCTAATCTCCCC
ATTTATTATCTATCTTTGTTTCAAGCTCCCAAGAAGATCACCAAATCCATGGAGAAGTTGTATAGAATGTTCCTTTGGCGCGGTGGCCCCGAGAAGAAGGGTTGTCATCT
TCTGAAATGGTCCTATATCCAATTGCCCATCGAGGAGGGAGGATTGGGCCTCTACGATATTCATAAGAAAAACGTTTCTCTTTAA
Protein sequenceShow/hide protein sequence
MVDWDYLDTILEAKGFGHKWRIWIKGCISSANYSIIINGKPRGRIIASRGLRQGDPLSPFLFILVADSLSRMLIEADKNGSIEGFQMGHGQQATHISHLQFADDTILFSS
CNQSHLSSLFKVIQDFEMASGLRINRQKTELLGLGIDTHLASQLASTFGCKQSTWPTTYLGFPLNGNPRRTSFWTPVIEKVQKRLNNWGSSNISKGGRHTLMQATLSNLP
IYYLSLFQAPKKITKSMEKLYRMFLWRGGPEKKGCHLLKWSYIQLPIEEGGLGLYDIHKKNVSL