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Lag0017100 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017100
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionSplicing factor YJU2
Genome locationchr5:190365..202280
RNA-Seq ExpressionLag0017100
SyntenyLag0017100
Gene Ontology termsGO:0000349 - generation of catalytic spliceosome for first transesterification step (biological process)
GO:0071006 - U2-type catalytic step 1 spliceosome (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577830.1 Splicing factor YJU2, partial [Cucurbita argyrosperma subsp. sororia]3.4e-2976.09Show/hide
Query:  KRKVIEESPHDPINTSTKAVTLRSLTSEGNDRNVGTSSDAKFISKSLPVRVSVIKKPEFIARVENKQRLEVQSKDTNTGLESLCQYYDSDED
        K+K+ EE PHDP NTSTKA  L +LT EG+D NVGTSS +KF+SKSLPVRVS+IKKPE  ARVENKQ LEVQ+ DTNTGLESLCQYY SDED
Subjt:  KRKVIEESPHDPINTSTKAVTLRSLTSEGNDRNVGTSSDAKFISKSLPVRVSVIKKPEFIARVENKQRLEVQSKDTNTGLESLCQYYDSDED

KAG7015867.1 Coiled-coil domain-containing protein 94-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]3.4e-2976.09Show/hide
Query:  KRKVIEESPHDPINTSTKAVTLRSLTSEGNDRNVGTSSDAKFISKSLPVRVSVIKKPEFIARVENKQRLEVQSKDTNTGLESLCQYYDSDED
        K+K+ EE PHDP NTSTKA  L +LT EG+D NVGTSS +KF+SKSLPVRVS+IKKPE  ARVENKQ LEVQ+ DTNTGLESLCQYY SDED
Subjt:  KRKVIEESPHDPINTSTKAVTLRSLTSEGNDRNVGTSSDAKFISKSLPVRVSVIKKPEFIARVENKQRLEVQSKDTNTGLESLCQYYDSDED

XP_022923549.1 coiled-coil domain-containing protein 94 homolog [Cucurbita moschata]3.4e-2976.09Show/hide
Query:  KRKVIEESPHDPINTSTKAVTLRSLTSEGNDRNVGTSSDAKFISKSLPVRVSVIKKPEFIARVENKQRLEVQSKDTNTGLESLCQYYDSDED
        K+K+ EE PHDP NTSTKA  L +LT EG+D NVGTSS +KF+SKSLPVRVS+IKKPE  ARVENKQ LEVQ+ DTNTGLESLCQYY SDED
Subjt:  KRKVIEESPHDPINTSTKAVTLRSLTSEGNDRNVGTSSDAKFISKSLPVRVSVIKKPEFIARVENKQRLEVQSKDTNTGLESLCQYYDSDED

XP_022965295.1 coiled-coil domain-containing protein 94 homolog [Cucurbita maxima]3.8e-2875Show/hide
Query:  KRKVIEESPHDPINTSTKAVTLRSLTSEGNDRNVGTSSDAKFISKSLPVRVSVIKKPEFIARVENKQRLEVQSKDTNTGLESLCQYYDSDED
        K+K+ EE PHDP NTSTKA  L +L  EG+D NVGTSS +KF+SKSLPVRVS+IKKPE  ARVENKQ LEVQ  DTNTGLESLCQYY SDED
Subjt:  KRKVIEESPHDPINTSTKAVTLRSLTSEGNDRNVGTSSDAKFISKSLPVRVSVIKKPEFIARVENKQRLEVQSKDTNTGLESLCQYYDSDED

XP_023552633.1 coiled-coil domain-containing protein 94 homolog [Cucurbita pepo subsp. pepo]5.8e-2976.09Show/hide
Query:  KRKVIEESPHDPINTSTKAVTLRSLTSEGNDRNVGTSSDAKFISKSLPVRVSVIKKPEFIARVENKQRLEVQSKDTNTGLESLCQYYDSDED
        K+K+ EE PHDP NTSTKA  L +LT EG+D NVGTSS +KF+SKSLPVRVS+IKKPE  ARVENKQ LEVQ  DTNTGLESLCQYY SDED
Subjt:  KRKVIEESPHDPINTSTKAVTLRSLTSEGNDRNVGTSSDAKFISKSLPVRVSVIKKPEFIARVENKQRLEVQSKDTNTGLESLCQYYDSDED

TrEMBL top hitse value%identityAlignment
A0A6J1E3A4 Splicing factor YJU22.2e-2164.13Show/hide
Query:  KRKVIEESPHDPINTSTKAVTLRSLTSEGNDRNVGTSSDAKFISKSLPVRVSVIKKPEFIARVENKQRLEVQSKDTNTGLESLCQYYDSDED
        K+KV+EESPHDP +TSTKAV L SLT EGND +VGTS DA+F+SKSL ++VS+IKKPE    V+N+     Q++D NTGL SLCQ Y SDED
Subjt:  KRKVIEESPHDPINTSTKAVTLRSLTSEGNDRNVGTSSDAKFISKSLPVRVSVIKKPEFIARVENKQRLEVQSKDTNTGLESLCQYYDSDED

A0A6J1E6Q8 Splicing factor YJU21.6e-2976.09Show/hide
Query:  KRKVIEESPHDPINTSTKAVTLRSLTSEGNDRNVGTSSDAKFISKSLPVRVSVIKKPEFIARVENKQRLEVQSKDTNTGLESLCQYYDSDED
        K+K+ EE PHDP NTSTKA  L +LT EG+D NVGTSS +KF+SKSLPVRVS+IKKPE  ARVENKQ LEVQ+ DTNTGLESLCQYY SDED
Subjt:  KRKVIEESPHDPINTSTKAVTLRSLTSEGNDRNVGTSSDAKFISKSLPVRVSVIKKPEFIARVENKQRLEVQSKDTNTGLESLCQYYDSDED

A0A6J1EW00 Splicing factor YJU21.3e-2165.22Show/hide
Query:  KRKVIEESPHDPINTSTKAVTLRSLTSEGNDRNVGTSSDAKFISKSLPVRVSVIKKPEFIARVENKQRLEVQSKDTNTGLESLCQYYDSDED
        K+K+ EESPHD   T+TK   L SLT EG D N  TS DAK ISKSL ++VS+IKKPE   RVE KQ+LEVQ  DTN GLESLCQ Y SDED
Subjt:  KRKVIEESPHDPINTSTKAVTLRSLTSEGNDRNVGTSSDAKFISKSLPVRVSVIKKPEFIARVENKQRLEVQSKDTNTGLESLCQYYDSDED

A0A6J1HNB0 Splicing factor YJU21.8e-2875Show/hide
Query:  KRKVIEESPHDPINTSTKAVTLRSLTSEGNDRNVGTSSDAKFISKSLPVRVSVIKKPEFIARVENKQRLEVQSKDTNTGLESLCQYYDSDED
        K+K+ EE PHDP NTSTKA  L +L  EG+D NVGTSS +KF+SKSLPVRVS+IKKPE  ARVENKQ LEVQ  DTNTGLESLCQYY SDED
Subjt:  KRKVIEESPHDPINTSTKAVTLRSLTSEGNDRNVGTSSDAKFISKSLPVRVSVIKKPEFIARVENKQRLEVQSKDTNTGLESLCQYYDSDED

A0A6J1HYT1 Splicing factor YJU24.3e-2266.3Show/hide
Query:  KRKVIEESPHDPINTSTKAVTLRSLTSEGNDRNVGTSSDAKFISKSLPVRVSVIKKPEFIARVENKQRLEVQSKDTNTGLESLCQYYDSDED
        K+K+ EESPHD   T+ K V L SLT EG D N  TSSDAKFISKSL ++VS+IKKPE   RVE KQ+LEVQ  DTN GLESLCQ Y S+ED
Subjt:  KRKVIEESPHDPINTSTKAVTLRSLTSEGNDRNVGTSSDAKFISKSLPVRVSVIKKPEFIARVENKQRLEVQSKDTNTGLESLCQYYDSDED

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGCGAAAGGTTATAGAAGAATCTCCTCATGATCCTATCAATACTTCAACAAAAGCTGTTACTCTCCGTAGCCTCACGAGTGAAGGAAACGATCGCAACGTTGGCACGTC
CAGTGATGCTAAGTTTATTTCTAAATCTTTGCCAGTTAGGGTTTCTGTTATTAAGAAACCAGAATTTATTGCTCGGGTGGAGAATAAACAAAGGTTGGAAGTTCAAAGCA
AAGATACGAACACTGGACTTGAGTCATTGTGCCAATACTACGATAGTGATGAGGATTGA
mRNA sequenceShow/hide mRNA sequence
AAGCGAAAGGTTATAGAAGAATCTCCTCATGATCCTATCAATACTTCAACAAAAGCTGTTACTCTCCGTAGCCTCACGAGTGAAGGAAACGATCGCAACGTTGGCACGTC
CAGTGATGCTAAGTTTATTTCTAAATCTTTGCCAGTTAGGGTTTCTGTTATTAAGAAACCAGAATTTATTGCTCGGGTGGAGAATAAACAAAGGTTGGAAGTTCAAAGCA
AAGATACGAACACTGGACTTGAGTCATTGTGCCAATACTACGATAGTGATGAGGATTGA
Protein sequenceShow/hide protein sequence
KRKVIEESPHDPINTSTKAVTLRSLTSEGNDRNVGTSSDAKFISKSLPVRVSVIKKPEFIARVENKQRLEVQSKDTNTGLESLCQYYDSDED